Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3495

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3493 and Pf6N2E2_3494 are separated by 2 nucleotidesPf6N2E2_3494 and Pf6N2E2_3495 are separated by 92 nucleotidesPf6N2E2_3495 and Pf6N2E2_3496 are separated by 20 nucleotidesPf6N2E2_3496 and Pf6N2E2_3497 are separated by 12 nucleotides Pf6N2E2_3493 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,074,805 to 4,076,157 _3493 Pf6N2E2_3494 - Acyl dehydratase, at 4,076,160 to 4,077,014 _3494 Pf6N2E2_3495 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,077,107 to 4,077,661 _3495 Pf6N2E2_3496 - lipoprotein, putative, at 4,077,682 to 4,078,299 _3496 Pf6N2E2_3497 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 4,078,312 to 4,079,061 _3497 Position (kb) 4077 4078Strain fitness (log2 ratio) -2 -1 0 1at 4076.129 kb on + strandat 4076.130 kb on - strandat 4076.130 kb on - strandat 4076.212 kb on - strandat 4076.461 kb on + strand, within Pf6N2E2_3494at 4076.461 kb on + strand, within Pf6N2E2_3494at 4076.462 kb on - strand, within Pf6N2E2_3494at 4076.718 kb on + strand, within Pf6N2E2_3494at 4076.739 kb on + strand, within Pf6N2E2_3494at 4076.739 kb on + strand, within Pf6N2E2_3494at 4076.739 kb on + strand, within Pf6N2E2_3494at 4076.740 kb on - strand, within Pf6N2E2_3494at 4076.740 kb on - strand, within Pf6N2E2_3494at 4076.984 kb on + strandat 4076.984 kb on + strandat 4076.984 kb on + strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.985 kb on - strandat 4076.989 kb on + strandat 4076.989 kb on + strandat 4076.989 kb on + strandat 4076.989 kb on + strandat 4077.120 kb on + strandat 4077.121 kb on - strandat 4077.235 kb on + strand, within Pf6N2E2_3495at 4077.236 kb on - strand, within Pf6N2E2_3495at 4077.273 kb on + strand, within Pf6N2E2_3495at 4077.274 kb on - strand, within Pf6N2E2_3495at 4077.274 kb on - strand, within Pf6N2E2_3495at 4077.274 kb on - strand, within Pf6N2E2_3495at 4077.274 kb on - strand, within Pf6N2E2_3495at 4077.274 kb on - strand, within Pf6N2E2_3495at 4077.297 kb on + strand, within Pf6N2E2_3495at 4077.297 kb on + strand, within Pf6N2E2_3495at 4077.349 kb on - strand, within Pf6N2E2_3495at 4077.349 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.522 kb on + strand, within Pf6N2E2_3495at 4077.604 kb on + strand, within Pf6N2E2_3495at 4077.680 kb on - strandat 4077.680 kb on - strandat 4077.848 kb on + strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.923 kb on + strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.926 kb on + strand, within Pf6N2E2_3496at 4077.926 kb on + strand, within Pf6N2E2_3496at 4077.927 kb on - strand, within Pf6N2E2_3496at 4077.927 kb on - strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4078.142 kb on + strand, within Pf6N2E2_3496at 4078.143 kb on - strand, within Pf6N2E2_3496at 4078.232 kb on + strand, within Pf6N2E2_3496at 4078.232 kb on + strand, within Pf6N2E2_3496at 4078.233 kb on - strand, within Pf6N2E2_3496at 4078.233 kb on - strand, within Pf6N2E2_3496at 4078.340 kb on + strandat 4078.341 kb on - strandat 4078.341 kb on - strandat 4078.341 kb on - strandat 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.608 kb on - strand, within Pf6N2E2_3497at 4078.628 kb on + strand, within Pf6N2E2_3497at 4078.629 kb on - strand, within Pf6N2E2_3497

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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4,076,129 + -0.2
4,076,130 - +0.6
4,076,130 - +0.2
4,076,212 - +0.5
4,076,461 + Pf6N2E2_3494 0.35 +0.7
4,076,461 + Pf6N2E2_3494 0.35 -1.5
4,076,462 - Pf6N2E2_3494 0.35 -2.2
4,076,718 + Pf6N2E2_3494 0.65 -2.7
4,076,739 + Pf6N2E2_3494 0.68 +0.2
4,076,739 + Pf6N2E2_3494 0.68 -0.5
4,076,739 + Pf6N2E2_3494 0.68 +1.7
4,076,740 - Pf6N2E2_3494 0.68 +1.3
4,076,740 - Pf6N2E2_3494 0.68 +0.6
4,076,984 + -0.9
4,076,984 + +1.0
4,076,984 + -0.5
4,076,985 - -0.6
4,076,985 - +0.2
4,076,985 - -0.1
4,076,985 - +0.6
4,076,985 - +0.9
4,076,985 - -0.2
4,076,985 - +0.6
4,076,985 - -0.4
4,076,989 + -0.6
4,076,989 + +0.7
4,076,989 + +0.4
4,076,989 + -1.6
4,077,120 + +0.6
4,077,121 - +0.6
4,077,235 + Pf6N2E2_3495 0.23 +0.9
4,077,236 - Pf6N2E2_3495 0.23 -0.5
4,077,273 + Pf6N2E2_3495 0.30 -0.2
4,077,274 - Pf6N2E2_3495 0.30 +0.8
4,077,274 - Pf6N2E2_3495 0.30 -0.3
4,077,274 - Pf6N2E2_3495 0.30 +1.1
4,077,274 - Pf6N2E2_3495 0.30 +1.3
4,077,274 - Pf6N2E2_3495 0.30 +1.5
4,077,297 + Pf6N2E2_3495 0.34 -1.6
4,077,297 + Pf6N2E2_3495 0.34 +0.6
4,077,349 - Pf6N2E2_3495 0.44 +0.9
4,077,349 - Pf6N2E2_3495 0.44 +1.7
4,077,391 - Pf6N2E2_3495 0.51 -0.7
4,077,391 - Pf6N2E2_3495 0.51 +0.9
4,077,391 - Pf6N2E2_3495 0.51 +0.9
4,077,522 + Pf6N2E2_3495 0.75 +1.0
4,077,604 + Pf6N2E2_3495 0.90 -0.1
4,077,680 - -0.3
4,077,680 - +0.2
4,077,848 + Pf6N2E2_3496 0.27 +1.7
4,077,849 - Pf6N2E2_3496 0.27 -1.7
4,077,849 - Pf6N2E2_3496 0.27 -0.6
4,077,849 - Pf6N2E2_3496 0.27 +1.6
4,077,875 + Pf6N2E2_3496 0.31 -0.6
4,077,875 + Pf6N2E2_3496 0.31 +0.9
4,077,875 + Pf6N2E2_3496 0.31 +0.7
4,077,875 + Pf6N2E2_3496 0.31 +0.7
4,077,875 + Pf6N2E2_3496 0.31 -0.0
4,077,876 - Pf6N2E2_3496 0.31 -1.5
4,077,876 - Pf6N2E2_3496 0.31 -0.5
4,077,876 - Pf6N2E2_3496 0.31 +0.0
4,077,876 - Pf6N2E2_3496 0.31 -0.7
4,077,923 + Pf6N2E2_3496 0.39 +0.5
4,077,924 - Pf6N2E2_3496 0.39 -1.4
4,077,924 - Pf6N2E2_3496 0.39 -1.4
4,077,924 - Pf6N2E2_3496 0.39 -0.6
4,077,926 + Pf6N2E2_3496 0.39 -1.2
4,077,926 + Pf6N2E2_3496 0.39 +0.4
4,077,927 - Pf6N2E2_3496 0.40 -1.2
4,077,927 - Pf6N2E2_3496 0.40 -1.2
4,077,938 + Pf6N2E2_3496 0.41 +0.6
4,077,938 + Pf6N2E2_3496 0.41 +0.2
4,077,938 + Pf6N2E2_3496 0.41 -0.4
4,077,938 + Pf6N2E2_3496 0.41 -0.6
4,077,938 + Pf6N2E2_3496 0.41 +0.5
4,077,938 + Pf6N2E2_3496 0.41 +0.4
4,077,938 + Pf6N2E2_3496 0.41 -0.4
4,077,938 + Pf6N2E2_3496 0.41 -0.4
4,077,939 - Pf6N2E2_3496 0.42 -1.3
4,077,939 - Pf6N2E2_3496 0.42 -1.4
4,077,939 - Pf6N2E2_3496 0.42 +0.2
4,077,939 - Pf6N2E2_3496 0.42 -2.0
4,078,142 + Pf6N2E2_3496 0.74 +0.3
4,078,143 - Pf6N2E2_3496 0.75 -1.5
4,078,232 + Pf6N2E2_3496 0.89 +0.2
4,078,232 + Pf6N2E2_3496 0.89 +1.4
4,078,233 - Pf6N2E2_3496 0.89 -0.9
4,078,233 - Pf6N2E2_3496 0.89 +0.2
4,078,340 + +0.7
4,078,341 - -0.9
4,078,341 - -0.2
4,078,341 - +0.1
4,078,437 + Pf6N2E2_3497 0.17 -1.2
4,078,437 + Pf6N2E2_3497 0.17 -0.3
4,078,437 + Pf6N2E2_3497 0.17 -0.4
4,078,437 + Pf6N2E2_3497 0.17 +0.0
4,078,438 - Pf6N2E2_3497 0.17 -0.9
4,078,438 - Pf6N2E2_3497 0.17 -0.5
4,078,438 - Pf6N2E2_3497 0.17 -1.0
4,078,438 - Pf6N2E2_3497 0.17 -0.3
4,078,438 - Pf6N2E2_3497 0.17 -1.6
4,078,438 - Pf6N2E2_3497 0.17 +1.4
4,078,439 + Pf6N2E2_3497 0.17 +0.9
4,078,439 + Pf6N2E2_3497 0.17 +1.1
4,078,439 + Pf6N2E2_3497 0.17 +0.8
4,078,439 + Pf6N2E2_3497 0.17 -0.9
4,078,439 + Pf6N2E2_3497 0.17 -1.2
4,078,439 + Pf6N2E2_3497 0.17 -0.4
4,078,439 + Pf6N2E2_3497 0.17 +0.6
4,078,439 + Pf6N2E2_3497 0.17 +0.8
4,078,439 + Pf6N2E2_3497 0.17 +0.7
4,078,439 + Pf6N2E2_3497 0.17 -1.1
4,078,439 + Pf6N2E2_3497 0.17 -1.2
4,078,440 - Pf6N2E2_3497 0.17 -1.7
4,078,440 - Pf6N2E2_3497 0.17 +0.3
4,078,440 - Pf6N2E2_3497 0.17 +0.0
4,078,440 - Pf6N2E2_3497 0.17 -0.4
4,078,440 - Pf6N2E2_3497 0.17 -0.4
4,078,440 - Pf6N2E2_3497 0.17 -1.8
4,078,440 - Pf6N2E2_3497 0.17 -2.1
4,078,440 - Pf6N2E2_3497 0.17 +0.4
4,078,440 - Pf6N2E2_3497 0.17 -0.6
4,078,440 - Pf6N2E2_3497 0.17 -0.5
4,078,440 - Pf6N2E2_3497 0.17 +0.8
4,078,440 - Pf6N2E2_3497 0.17 +1.2
4,078,440 - Pf6N2E2_3497 0.17 -0.3
4,078,440 - Pf6N2E2_3497 0.17 +0.2
4,078,440 - Pf6N2E2_3497 0.17 +0.0
4,078,440 - Pf6N2E2_3497 0.17 -1.6
4,078,440 - Pf6N2E2_3497 0.17 -0.8
4,078,440 - Pf6N2E2_3497 0.17 -0.1
4,078,608 - Pf6N2E2_3497 0.39 -0.5
4,078,628 + Pf6N2E2_3497 0.42 -0.2
4,078,629 - Pf6N2E2_3497 0.42 -1.2

Or see this region's nucleotide sequence