Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2001

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2000 and Pf6N2E2_2001 are separated by 576 nucleotides Pf6N2E2_2000 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 2,367,834 to 2,369,675 _2000 Pf6N2E2_2001 - Nuclease precursor (EC 3.1.30.2), at 2,370,252 to 2,371,277 _2001 Position (kb) 2370 2371 2372Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2369.303 kb on + strand, within Pf6N2E2_2000at 2369.304 kb on - strand, within Pf6N2E2_2000at 2369.304 kb on - strand, within Pf6N2E2_2000at 2369.333 kb on + strand, within Pf6N2E2_2000at 2369.333 kb on + strand, within Pf6N2E2_2000at 2369.333 kb on + strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.334 kb on - strand, within Pf6N2E2_2000at 2369.352 kb on + strand, within Pf6N2E2_2000at 2369.352 kb on + strand, within Pf6N2E2_2000at 2369.353 kb on - strand, within Pf6N2E2_2000at 2369.377 kb on + strand, within Pf6N2E2_2000at 2369.378 kb on - strand, within Pf6N2E2_2000at 2369.378 kb on - strand, within Pf6N2E2_2000at 2369.382 kb on + strand, within Pf6N2E2_2000at 2369.382 kb on + strand, within Pf6N2E2_2000at 2369.504 kb on + strandat 2369.611 kb on - strandat 2369.716 kb on + strandat 2369.716 kb on + strandat 2369.717 kb on - strandat 2369.746 kb on - strandat 2369.746 kb on - strandat 2369.746 kb on - strandat 2369.848 kb on + strandat 2369.871 kb on + strandat 2369.935 kb on - strandat 2369.949 kb on + strandat 2369.950 kb on - strandat 2369.950 kb on - strandat 2369.950 kb on - strandat 2370.035 kb on - strandat 2370.157 kb on + strandat 2370.202 kb on + strandat 2370.202 kb on + strandat 2370.202 kb on + strandat 2370.202 kb on + strandat 2370.203 kb on - strandat 2370.203 kb on - strandat 2370.203 kb on - strandat 2370.209 kb on - strandat 2370.254 kb on - strandat 2370.345 kb on + strandat 2370.346 kb on - strandat 2370.346 kb on - strandat 2370.388 kb on + strand, within Pf6N2E2_2001at 2370.388 kb on + strand, within Pf6N2E2_2001at 2370.389 kb on - strand, within Pf6N2E2_2001at 2370.457 kb on + strand, within Pf6N2E2_2001at 2370.477 kb on - strand, within Pf6N2E2_2001at 2370.562 kb on + strand, within Pf6N2E2_2001at 2370.583 kb on + strand, within Pf6N2E2_2001at 2370.583 kb on + strand, within Pf6N2E2_2001at 2370.584 kb on - strand, within Pf6N2E2_2001at 2370.611 kb on + strand, within Pf6N2E2_2001at 2370.691 kb on + strand, within Pf6N2E2_2001at 2370.691 kb on + strand, within Pf6N2E2_2001at 2370.691 kb on + strand, within Pf6N2E2_2001at 2370.784 kb on + strand, within Pf6N2E2_2001at 2370.784 kb on + strand, within Pf6N2E2_2001at 2370.784 kb on + strand, within Pf6N2E2_2001at 2370.785 kb on - strand, within Pf6N2E2_2001at 2370.929 kb on - strand, within Pf6N2E2_2001at 2371.055 kb on + strand, within Pf6N2E2_2001at 2371.055 kb on + strand, within Pf6N2E2_2001at 2371.056 kb on - strand, within Pf6N2E2_2001at 2371.056 kb on - strand, within Pf6N2E2_2001at 2371.056 kb on - strand, within Pf6N2E2_2001at 2371.056 kb on - strand, within Pf6N2E2_2001at 2371.098 kb on + strand, within Pf6N2E2_2001at 2371.098 kb on + strand, within Pf6N2E2_2001at 2371.099 kb on - strand, within Pf6N2E2_2001at 2371.153 kb on - strand, within Pf6N2E2_2001at 2371.183 kb on + strandat 2371.203 kb on + strandat 2371.204 kb on - strandat 2371.217 kb on - strandat 2371.265 kb on + strandat 2371.265 kb on + strandat 2371.433 kb on + strandat 2371.434 kb on - strandat 2371.453 kb on - strandat 2371.453 kb on - strandat 2371.538 kb on - strandat 2371.539 kb on + strandat 2371.539 kb on + strandat 2371.539 kb on + strandat 2371.539 kb on + strandat 2371.539 kb on + strandat 2371.539 kb on + strandat 2371.540 kb on - strandat 2371.540 kb on - strandat 2371.540 kb on - strandat 2371.543 kb on + strandat 2371.543 kb on + strandat 2371.583 kb on - strandat 2371.583 kb on - strandat 2371.646 kb on - strandat 2371.646 kb on - strandat 2371.646 kb on - strandat 2371.725 kb on - strandat 2371.765 kb on - strandat 2371.819 kb on + strandat 2371.881 kb on + strandat 2371.923 kb on + strandat 2371.923 kb on + strandat 2372.059 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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2,369,303 + Pf6N2E2_2000 0.80 +0.3
2,369,304 - Pf6N2E2_2000 0.80 +1.2
2,369,304 - Pf6N2E2_2000 0.80 -0.7
2,369,333 + Pf6N2E2_2000 0.81 +0.3
2,369,333 + Pf6N2E2_2000 0.81 +0.4
2,369,333 + Pf6N2E2_2000 0.81 -1.2
2,369,334 - Pf6N2E2_2000 0.81 -0.7
2,369,334 - Pf6N2E2_2000 0.81 -0.2
2,369,334 - Pf6N2E2_2000 0.81 +2.6
2,369,334 - Pf6N2E2_2000 0.81 +0.3
2,369,334 - Pf6N2E2_2000 0.81 +0.8
2,369,334 - Pf6N2E2_2000 0.81 +0.8
2,369,334 - Pf6N2E2_2000 0.81 -1.1
2,369,352 + Pf6N2E2_2000 0.82 -0.9
2,369,352 + Pf6N2E2_2000 0.82 +0.2
2,369,353 - Pf6N2E2_2000 0.82 +0.1
2,369,377 + Pf6N2E2_2000 0.84 -2.0
2,369,378 - Pf6N2E2_2000 0.84 +1.6
2,369,378 - Pf6N2E2_2000 0.84 -0.4
2,369,382 + Pf6N2E2_2000 0.84 -0.0
2,369,382 + Pf6N2E2_2000 0.84 -2.5
2,369,504 + +0.3
2,369,611 - +0.4
2,369,716 + -0.1
2,369,716 + -0.0
2,369,717 - -1.7
2,369,746 - +1.1
2,369,746 - +1.0
2,369,746 - -1.2
2,369,848 + -1.0
2,369,871 + -1.3
2,369,935 - +1.6
2,369,949 + +0.5
2,369,950 - +0.7
2,369,950 - +1.3
2,369,950 - +0.3
2,370,035 - +0.5
2,370,157 + +0.5
2,370,202 + -1.2
2,370,202 + -0.7
2,370,202 + +0.6
2,370,202 + -0.0
2,370,203 - +0.6
2,370,203 - -0.9
2,370,203 - -0.3
2,370,209 - -0.4
2,370,254 - +0.3
2,370,345 + -1.7
2,370,346 - -1.3
2,370,346 - -1.1
2,370,388 + Pf6N2E2_2001 0.13 -0.4
2,370,388 + Pf6N2E2_2001 0.13 -2.1
2,370,389 - Pf6N2E2_2001 0.13 -0.7
2,370,457 + Pf6N2E2_2001 0.20 -1.7
2,370,477 - Pf6N2E2_2001 0.22 -1.7
2,370,562 + Pf6N2E2_2001 0.30 -0.2
2,370,583 + Pf6N2E2_2001 0.32 -3.4
2,370,583 + Pf6N2E2_2001 0.32 -0.3
2,370,584 - Pf6N2E2_2001 0.32 -1.7
2,370,611 + Pf6N2E2_2001 0.35 -0.0
2,370,691 + Pf6N2E2_2001 0.43 -1.1
2,370,691 + Pf6N2E2_2001 0.43 -2.1
2,370,691 + Pf6N2E2_2001 0.43 -2.7
2,370,784 + Pf6N2E2_2001 0.52 -0.7
2,370,784 + Pf6N2E2_2001 0.52 -2.1
2,370,784 + Pf6N2E2_2001 0.52 +0.2
2,370,785 - Pf6N2E2_2001 0.52 -2.7
2,370,929 - Pf6N2E2_2001 0.66 -0.4
2,371,055 + Pf6N2E2_2001 0.78 +0.1
2,371,055 + Pf6N2E2_2001 0.78 -0.9
2,371,056 - Pf6N2E2_2001 0.78 -2.2
2,371,056 - Pf6N2E2_2001 0.78 -0.1
2,371,056 - Pf6N2E2_2001 0.78 -0.3
2,371,056 - Pf6N2E2_2001 0.78 -1.9
2,371,098 + Pf6N2E2_2001 0.82 -1.2
2,371,098 + Pf6N2E2_2001 0.82 +1.6
2,371,099 - Pf6N2E2_2001 0.83 -0.7
2,371,153 - Pf6N2E2_2001 0.88 +2.7
2,371,183 + -1.3
2,371,203 + +0.1
2,371,204 - +3.0
2,371,217 - +1.0
2,371,265 + -0.4
2,371,265 + -0.4
2,371,433 + +0.3
2,371,434 - +1.6
2,371,453 - +0.4
2,371,453 - +0.7
2,371,538 - -0.1
2,371,539 + -0.4
2,371,539 + -0.3
2,371,539 + +0.3
2,371,539 + -0.7
2,371,539 + +1.6
2,371,539 + +0.3
2,371,540 - +0.4
2,371,540 - +2.4
2,371,540 - +0.6
2,371,543 + -0.7
2,371,543 + -0.6
2,371,583 - +1.5
2,371,583 - +0.8
2,371,646 - +1.2
2,371,646 - -0.1
2,371,646 - +1.0
2,371,725 - +1.2
2,371,765 - +0.8
2,371,819 + -0.0
2,371,881 + -0.1
2,371,923 + -0.3
2,371,923 + +0.8
2,372,059 + +1.0

Or see this region's nucleotide sequence