Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1421

Experiment: Fluorophosphate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1420 and Pf6N2E2_1421 overlap by 8 nucleotidesPf6N2E2_1421 and Pf6N2E2_1422 overlap by 2 nucleotidesPf6N2E2_1422 and Pf6N2E2_1423 are separated by 164 nucleotides Pf6N2E2_1420 - ABC exporter for hemopore HasA, membrane fusion protein (MFP) family component HasE, at 1,667,106 to 1,668,476 _1420 Pf6N2E2_1421 - ABC-type protease exporter, ATP-binding component PrtD/AprD, at 1,668,469 to 1,670,190 _1421 Pf6N2E2_1422 - hypothetical protein, at 1,670,189 to 1,670,335 _1422 Pf6N2E2_1423 - Gamma-aminobutyrate permease, at 1,670,500 to 1,671,900 _1423 Position (kb) 1668 1669 1670 1671Strain fitness (log2 ratio) -1 0 1 2at 1667.517 kb on - strand, within Pf6N2E2_1420at 1667.608 kb on + strand, within Pf6N2E2_1420at 1667.609 kb on - strand, within Pf6N2E2_1420at 1667.872 kb on + strand, within Pf6N2E2_1420at 1667.872 kb on + strand, within Pf6N2E2_1420at 1667.872 kb on + strand, within Pf6N2E2_1420at 1667.894 kb on - strand, within Pf6N2E2_1420at 1668.445 kb on + strandat 1668.446 kb on - strandat 1668.446 kb on - strandat 1668.446 kb on - strandat 1668.604 kb on + strandat 1668.604 kb on + strandat 1668.604 kb on + strandat 1668.604 kb on + strandat 1668.605 kb on - strandat 1668.839 kb on - strand, within Pf6N2E2_1421at 1668.972 kb on - strand, within Pf6N2E2_1421at 1669.181 kb on + strand, within Pf6N2E2_1421at 1669.181 kb on + strand, within Pf6N2E2_1421at 1669.181 kb on + strand, within Pf6N2E2_1421at 1669.181 kb on + strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.182 kb on - strand, within Pf6N2E2_1421at 1669.278 kb on - strand, within Pf6N2E2_1421at 1669.467 kb on + strand, within Pf6N2E2_1421at 1669.468 kb on - strand, within Pf6N2E2_1421at 1669.470 kb on + strand, within Pf6N2E2_1421at 1669.471 kb on - strand, within Pf6N2E2_1421at 1669.471 kb on - strand, within Pf6N2E2_1421at 1669.471 kb on - strand, within Pf6N2E2_1421at 1669.471 kb on - strand, within Pf6N2E2_1421at 1669.604 kb on + strand, within Pf6N2E2_1421at 1670.052 kb on - strandat 1670.066 kb on + strandat 1670.138 kb on + strandat 1670.295 kb on + strand, within Pf6N2E2_1422at 1670.330 kb on + strandat 1670.765 kb on + strand, within Pf6N2E2_1423at 1670.766 kb on - strand, within Pf6N2E2_1423at 1670.766 kb on - strand, within Pf6N2E2_1423at 1670.832 kb on - strand, within Pf6N2E2_1423at 1670.951 kb on + strand, within Pf6N2E2_1423at 1670.952 kb on - strand, within Pf6N2E2_1423at 1670.952 kb on - strand, within Pf6N2E2_1423at 1670.952 kb on - strand, within Pf6N2E2_1423at 1670.952 kb on - strand, within Pf6N2E2_1423at 1670.972 kb on + strand, within Pf6N2E2_1423at 1671.143 kb on + strand, within Pf6N2E2_1423

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluorophosphate 0.125 M
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1,667,517 - Pf6N2E2_1420 0.30 -0.1
1,667,608 + Pf6N2E2_1420 0.37 +0.0
1,667,609 - Pf6N2E2_1420 0.37 +0.7
1,667,872 + Pf6N2E2_1420 0.56 -0.6
1,667,872 + Pf6N2E2_1420 0.56 +0.8
1,667,872 + Pf6N2E2_1420 0.56 +0.0
1,667,894 - Pf6N2E2_1420 0.57 +0.4
1,668,445 + +0.5
1,668,446 - +0.3
1,668,446 - +2.4
1,668,446 - -0.2
1,668,604 + +0.1
1,668,604 + +0.2
1,668,604 + -1.6
1,668,604 + +0.0
1,668,605 - -0.8
1,668,839 - Pf6N2E2_1421 0.21 +0.3
1,668,972 - Pf6N2E2_1421 0.29 +0.9
1,669,181 + Pf6N2E2_1421 0.41 +0.0
1,669,181 + Pf6N2E2_1421 0.41 +0.0
1,669,181 + Pf6N2E2_1421 0.41 +0.7
1,669,181 + Pf6N2E2_1421 0.41 +0.3
1,669,182 - Pf6N2E2_1421 0.41 +0.2
1,669,182 - Pf6N2E2_1421 0.41 -0.5
1,669,182 - Pf6N2E2_1421 0.41 +0.5
1,669,182 - Pf6N2E2_1421 0.41 +1.4
1,669,182 - Pf6N2E2_1421 0.41 +0.2
1,669,182 - Pf6N2E2_1421 0.41 +1.3
1,669,182 - Pf6N2E2_1421 0.41 +0.2
1,669,278 - Pf6N2E2_1421 0.47 +1.5
1,669,467 + Pf6N2E2_1421 0.58 -0.2
1,669,468 - Pf6N2E2_1421 0.58 +0.2
1,669,470 + Pf6N2E2_1421 0.58 +1.5
1,669,471 - Pf6N2E2_1421 0.58 -0.5
1,669,471 - Pf6N2E2_1421 0.58 +0.2
1,669,471 - Pf6N2E2_1421 0.58 -1.5
1,669,471 - Pf6N2E2_1421 0.58 -0.1
1,669,604 + Pf6N2E2_1421 0.66 +1.2
1,670,052 - +1.5
1,670,066 + -1.3
1,670,138 + -0.1
1,670,295 + Pf6N2E2_1422 0.72 -0.5
1,670,330 + +0.4
1,670,765 + Pf6N2E2_1423 0.19 +1.4
1,670,766 - Pf6N2E2_1423 0.19 -0.4
1,670,766 - Pf6N2E2_1423 0.19 +0.7
1,670,832 - Pf6N2E2_1423 0.24 +0.0
1,670,951 + Pf6N2E2_1423 0.32 -0.8
1,670,952 - Pf6N2E2_1423 0.32 -1.5
1,670,952 - Pf6N2E2_1423 0.32 -1.5
1,670,952 - Pf6N2E2_1423 0.32 -0.2
1,670,952 - Pf6N2E2_1423 0.32 +0.5
1,670,972 + Pf6N2E2_1423 0.34 -0.4
1,671,143 + Pf6N2E2_1423 0.46 -1.2

Or see this region's nucleotide sequence