Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02755 and MMP_RS02760 are separated by 12 nucleotides MMP_RS02760 and MMP_RS02765 are separated by 4 nucleotides MMP_RS02765 and MMP_RS02770 are separated by 194 nucleotides
MMP_RS02755: MMP_RS02755 - ABC transporter permease, at 526,565 to 527,812
_RS02755
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850
_RS02765
MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620
_RS02770
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -1
0
1 at 526.857 kb on + strand, within MMP_RS02755 at 526.892 kb on + strand, within MMP_RS02755 at 526.915 kb on - strand, within MMP_RS02755 at 527.462 kb on + strand, within MMP_RS02755 at 527.525 kb on - strand, within MMP_RS02755 at 527.535 kb on + strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.642 kb on - strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.643 kb on + strand, within MMP_RS02755 at 527.665 kb on - strand, within MMP_RS02755 at 527.697 kb on + strand at 527.762 kb on + strand at 527.771 kb on - strand at 527.789 kb on + strand at 527.817 kb on + strand at 527.882 kb on - strand at 527.883 kb on + strand at 528.041 kb on + strand, within MMP_RS02760 at 528.084 kb on + strand, within MMP_RS02760 at 528.113 kb on - strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.114 kb on + strand, within MMP_RS02760 at 528.146 kb on + strand, within MMP_RS02760 at 528.153 kb on + strand, within MMP_RS02760 at 528.173 kb on + strand, within MMP_RS02760 at 528.208 kb on - strand, within MMP_RS02760 at 528.295 kb on - strand, within MMP_RS02760 at 528.301 kb on - strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.359 kb on - strand, within MMP_RS02760 at 528.401 kb on - strand, within MMP_RS02760 at 528.419 kb on - strand, within MMP_RS02760 at 528.420 kb on + strand, within MMP_RS02760 at 528.478 kb on + strand, within MMP_RS02760 at 528.481 kb on - strand, within MMP_RS02760 at 528.493 kb on - strand, within MMP_RS02760 at 528.625 kb on - strand, within MMP_RS02760 at 528.718 kb on - strand, within MMP_RS02760 at 528.759 kb on + strand, within MMP_RS02760 at 528.852 kb on + strand, within MMP_RS02760 at 528.921 kb on + strand, within MMP_RS02760 at 528.964 kb on - strand, within MMP_RS02760 at 529.143 kb on + strand at 529.225 kb on - strand, within MMP_RS02765 at 529.442 kb on - strand, within MMP_RS02765 at 529.560 kb on - strand, within MMP_RS02765 at 529.566 kb on + strand, within MMP_RS02765 at 529.578 kb on - strand, within MMP_RS02765 at 529.694 kb on - strand, within MMP_RS02765 at 529.850 kb on - strand at 529.946 kb on + strand at 529.972 kb on + strand at 530.014 kb on - strand at 530.014 kb on - strand at 530.042 kb on - strand at 530.102 kb on + strand at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 526,857 + MMP_RS02755 0.23 -0.6 526,892 + MMP_RS02755 0.26 +0.7 526,915 - MMP_RS02755 0.28 -0.4 527,462 + MMP_RS02755 0.72 -0.1 527,525 - MMP_RS02755 0.77 -0.1 527,535 + MMP_RS02755 0.78 +0.0 527,642 - MMP_RS02755 0.86 -0.0 527,642 - MMP_RS02755 0.86 -0.3 527,643 + MMP_RS02755 0.86 +0.1 527,643 + MMP_RS02755 0.86 +0.3 527,665 - MMP_RS02755 0.88 -0.1 527,697 + +0.0 527,762 + +0.2 527,771 - -0.2 527,789 + +0.1 527,817 + -0.2 527,882 - -0.1 527,883 + -0.3 528,041 + MMP_RS02760 0.16 +0.3 528,084 + MMP_RS02760 0.20 +0.4 528,113 - MMP_RS02760 0.22 +0.1 528,114 + MMP_RS02760 0.22 -0.1 528,114 + MMP_RS02760 0.22 -0.3 528,146 + MMP_RS02760 0.24 +0.0 528,153 + MMP_RS02760 0.25 -0.1 528,173 + MMP_RS02760 0.26 -0.2 528,208 - MMP_RS02760 0.29 +0.4 528,295 - MMP_RS02760 0.36 -0.3 528,301 - MMP_RS02760 0.36 -0.3 528,302 + MMP_RS02760 0.36 -0.2 528,302 + MMP_RS02760 0.36 +0.7 528,359 - MMP_RS02760 0.41 +0.3 528,401 - MMP_RS02760 0.44 +0.1 528,419 - MMP_RS02760 0.45 +1.7 528,420 + MMP_RS02760 0.45 +0.4 528,478 + MMP_RS02760 0.50 +0.1 528,481 - MMP_RS02760 0.50 +0.0 528,493 - MMP_RS02760 0.51 +0.0 528,625 - MMP_RS02760 0.61 -0.3 528,718 - MMP_RS02760 0.68 +0.4 528,759 + MMP_RS02760 0.71 +0.3 528,852 + MMP_RS02760 0.78 +0.0 528,921 + MMP_RS02760 0.83 -0.2 528,964 - MMP_RS02760 0.86 -0.2 529,143 + +0.1 529,225 - MMP_RS02765 0.11 +0.3 529,442 - MMP_RS02765 0.42 +0.0 529,560 - MMP_RS02765 0.59 -0.3 529,566 + MMP_RS02765 0.60 -0.0 529,578 - MMP_RS02765 0.61 +0.2 529,694 - MMP_RS02765 0.78 +0.3 529,850 - -0.5 529,946 + +0.1 529,972 + -0.1 530,014 - -0.1 530,014 - +0.3 530,042 - -0.0 530,102 + +0.4 530,104 - MMP_RS02770 0.10 -0.2 530,104 - MMP_RS02770 0.10 +0.1 530,104 - MMP_RS02770 0.10 +0.7 530,104 - MMP_RS02770 0.10 +0.2
Or see this region's nucleotide sequence