Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02570

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02560 and MMP_RS02565 overlap by 8 nucleotidesMMP_RS02565 and MMP_RS02570 are separated by 275 nucleotidesMMP_RS02570 and MMP_RS02575 are separated by 524 nucleotides MMP_RS02560: MMP_RS02560 - DUF2283 domain-containing protein, at 478,571 to 478,954 _RS02560 MMP_RS02565: MMP_RS02565 - hypothetical protein, at 478,947 to 479,240 _RS02565 MMP_RS02570: MMP_RS02570 - cation:proton antiporter, at 479,516 to 481,144 _RS02570 MMP_RS02575: MMP_RS02575 - CAAX prenyl protease Rce1, at 481,669 to 482,484 _RS02575 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -1 0 1at 478.602 kb on + strandat 478.623 kb on - strand, within MMP_RS02560at 478.631 kb on - strand, within MMP_RS02560at 478.637 kb on + strand, within MMP_RS02560at 478.638 kb on - strand, within MMP_RS02560at 478.639 kb on + strand, within MMP_RS02560at 478.647 kb on - strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.730 kb on - strand, within MMP_RS02560at 478.730 kb on - strand, within MMP_RS02560at 478.731 kb on + strand, within MMP_RS02560at 478.731 kb on + strand, within MMP_RS02560at 478.778 kb on - strand, within MMP_RS02560at 478.856 kb on - strand, within MMP_RS02560at 478.870 kb on + strand, within MMP_RS02560at 478.896 kb on - strand, within MMP_RS02560at 478.897 kb on + strand, within MMP_RS02560at 478.899 kb on + strand, within MMP_RS02560at 478.899 kb on + strand, within MMP_RS02560at 478.970 kb on - strandat 479.027 kb on - strand, within MMP_RS02565at 479.028 kb on + strand, within MMP_RS02565at 479.036 kb on - strand, within MMP_RS02565at 479.036 kb on - strand, within MMP_RS02565at 479.037 kb on + strand, within MMP_RS02565at 479.042 kb on - strand, within MMP_RS02565at 479.045 kb on - strand, within MMP_RS02565at 479.046 kb on + strand, within MMP_RS02565at 479.046 kb on + strand, within MMP_RS02565at 479.060 kb on + strand, within MMP_RS02565at 479.062 kb on - strand, within MMP_RS02565at 479.062 kb on - strand, within MMP_RS02565at 479.063 kb on + strand, within MMP_RS02565at 479.064 kb on - strand, within MMP_RS02565at 479.064 kb on - strand, within MMP_RS02565at 479.065 kb on + strand, within MMP_RS02565at 479.076 kb on + strand, within MMP_RS02565at 479.135 kb on - strand, within MMP_RS02565at 479.136 kb on + strand, within MMP_RS02565at 479.137 kb on - strand, within MMP_RS02565at 479.138 kb on + strand, within MMP_RS02565at 479.157 kb on - strand, within MMP_RS02565at 479.254 kb on + strandat 479.261 kb on - strandat 479.262 kb on + strandat 479.263 kb on - strandat 479.264 kb on + strandat 479.265 kb on - strandat 479.281 kb on + strandat 479.296 kb on + strandat 479.303 kb on + strandat 479.328 kb on - strandat 479.328 kb on - strandat 479.335 kb on - strandat 479.346 kb on - strandat 479.351 kb on + strandat 479.440 kb on + strandat 479.442 kb on + strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.446 kb on + strandat 479.446 kb on + strandat 479.446 kb on + strandat 479.448 kb on + strandat 479.448 kb on + strandat 479.561 kb on - strandat 479.717 kb on - strand, within MMP_RS02570at 479.726 kb on + strand, within MMP_RS02570at 479.748 kb on + strand, within MMP_RS02570at 479.809 kb on - strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.863 kb on + strand, within MMP_RS02570at 479.913 kb on - strand, within MMP_RS02570at 479.920 kb on - strand, within MMP_RS02570at 479.957 kb on - strand, within MMP_RS02570at 479.960 kb on - strand, within MMP_RS02570at 479.977 kb on - strand, within MMP_RS02570at 480.107 kb on + strand, within MMP_RS02570at 480.142 kb on - strand, within MMP_RS02570at 480.188 kb on + strand, within MMP_RS02570at 480.239 kb on + strand, within MMP_RS02570at 480.269 kb on + strand, within MMP_RS02570at 480.269 kb on + strand, within MMP_RS02570at 480.286 kb on - strand, within MMP_RS02570at 480.287 kb on + strand, within MMP_RS02570at 480.287 kb on + strand, within MMP_RS02570at 480.287 kb on + strand, within MMP_RS02570at 480.291 kb on + strand, within MMP_RS02570at 480.291 kb on + strand, within MMP_RS02570at 480.545 kb on + strand, within MMP_RS02570at 480.597 kb on - strand, within MMP_RS02570at 480.597 kb on - strand, within MMP_RS02570at 480.597 kb on - strand, within MMP_RS02570at 480.598 kb on + strand, within MMP_RS02570at 480.604 kb on - strand, within MMP_RS02570at 480.621 kb on - strand, within MMP_RS02570at 480.621 kb on - strand, within MMP_RS02570at 480.622 kb on + strand, within MMP_RS02570at 480.830 kb on + strand, within MMP_RS02570at 480.834 kb on + strand, within MMP_RS02570at 480.834 kb on + strand, within MMP_RS02570at 480.838 kb on - strand, within MMP_RS02570at 480.839 kb on + strand, within MMP_RS02570at 480.868 kb on + strand, within MMP_RS02570at 480.879 kb on + strand, within MMP_RS02570at 480.879 kb on + strand, within MMP_RS02570at 480.881 kb on + strand, within MMP_RS02570at 480.932 kb on - strand, within MMP_RS02570at 480.933 kb on + strand, within MMP_RS02570at 481.109 kb on - strandat 481.114 kb on - strandat 481.114 kb on - strandat 481.114 kb on - strandat 481.115 kb on + strandat 481.178 kb on - strandat 481.178 kb on - strandat 481.198 kb on - strandat 481.198 kb on - strandat 481.199 kb on + strandat 481.199 kb on + strandat 481.260 kb on + strandat 481.262 kb on + strandat 481.295 kb on + strandat 481.308 kb on - strandat 481.309 kb on + strandat 481.309 kb on + strandat 481.311 kb on + strandat 481.459 kb on - strandat 481.482 kb on - strandat 481.482 kb on - strandat 481.482 kb on - strandat 481.483 kb on + strandat 481.529 kb on - strandat 481.529 kb on - strandat 481.530 kb on + strandat 481.530 kb on + strandat 481.604 kb on - strandat 481.613 kb on - strandat 481.690 kb on + strandat 481.737 kb on + strandat 481.784 kb on - strand, within MMP_RS02575at 481.787 kb on + strand, within MMP_RS02575at 481.838 kb on - strand, within MMP_RS02575at 481.882 kb on + strand, within MMP_RS02575at 481.958 kb on - strand, within MMP_RS02575at 481.958 kb on - strand, within MMP_RS02575at 481.962 kb on + strand, within MMP_RS02575at 481.974 kb on + strand, within MMP_RS02575at 482.070 kb on + strand, within MMP_RS02575

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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478,602 + -0.2
478,623 - MMP_RS02560 0.14 -0.2
478,631 - MMP_RS02560 0.16 +0.1
478,637 + MMP_RS02560 0.17 +0.3
478,638 - MMP_RS02560 0.17 +0.0
478,639 + MMP_RS02560 0.18 +0.1
478,647 - MMP_RS02560 0.20 +0.1
478,722 + MMP_RS02560 0.39 +0.4
478,722 + MMP_RS02560 0.39 -0.3
478,722 + MMP_RS02560 0.39 +0.2
478,730 - MMP_RS02560 0.41 +0.5
478,730 - MMP_RS02560 0.41 -0.4
478,731 + MMP_RS02560 0.42 -0.3
478,731 + MMP_RS02560 0.42 +0.4
478,778 - MMP_RS02560 0.54 -0.0
478,856 - MMP_RS02560 0.74 +0.8
478,870 + MMP_RS02560 0.78 -0.6
478,896 - MMP_RS02560 0.85 -0.3
478,897 + MMP_RS02560 0.85 -0.1
478,899 + MMP_RS02560 0.85 -0.3
478,899 + MMP_RS02560 0.85 -0.1
478,970 - -0.0
479,027 - MMP_RS02565 0.27 -0.1
479,028 + MMP_RS02565 0.28 -0.2
479,036 - MMP_RS02565 0.30 +0.2
479,036 - MMP_RS02565 0.30 +0.0
479,037 + MMP_RS02565 0.31 +0.2
479,042 - MMP_RS02565 0.32 -0.3
479,045 - MMP_RS02565 0.33 +0.2
479,046 + MMP_RS02565 0.34 +0.3
479,046 + MMP_RS02565 0.34 +0.3
479,060 + MMP_RS02565 0.38 +0.8
479,062 - MMP_RS02565 0.39 +0.1
479,062 - MMP_RS02565 0.39 +0.3
479,063 + MMP_RS02565 0.39 -0.2
479,064 - MMP_RS02565 0.40 -0.2
479,064 - MMP_RS02565 0.40 +0.1
479,065 + MMP_RS02565 0.40 -0.3
479,076 + MMP_RS02565 0.44 +0.5
479,135 - MMP_RS02565 0.64 +0.3
479,136 + MMP_RS02565 0.64 +1.3
479,137 - MMP_RS02565 0.65 +0.1
479,138 + MMP_RS02565 0.65 +0.9
479,157 - MMP_RS02565 0.71 +0.0
479,254 + +0.8
479,261 - +0.0
479,262 + +0.2
479,263 - +0.2
479,264 + +0.3
479,265 - -0.4
479,281 + +0.2
479,296 + +0.1
479,303 + -0.0
479,328 - -0.2
479,328 - -0.4
479,335 - +0.5
479,346 - -0.0
479,351 + +0.2
479,440 + -0.2
479,442 + -0.5
479,445 - -0.5
479,445 - +0.2
479,445 - -0.1
479,445 - +0.3
479,445 - +1.3
479,445 - -0.9
479,446 + +0.4
479,446 + +0.0
479,446 + -0.4
479,448 + -0.1
479,448 + +0.1
479,561 - -0.0
479,717 - MMP_RS02570 0.12 -0.5
479,726 + MMP_RS02570 0.13 +0.1
479,748 + MMP_RS02570 0.14 +0.2
479,809 - MMP_RS02570 0.18 +0.2
479,810 + MMP_RS02570 0.18 +0.2
479,810 + MMP_RS02570 0.18 -0.0
479,810 + MMP_RS02570 0.18 -0.1
479,863 + MMP_RS02570 0.21 -0.1
479,913 - MMP_RS02570 0.24 -0.5
479,920 - MMP_RS02570 0.25 -0.1
479,957 - MMP_RS02570 0.27 +0.2
479,960 - MMP_RS02570 0.27 -0.4
479,977 - MMP_RS02570 0.28 -0.4
480,107 + MMP_RS02570 0.36 -0.0
480,142 - MMP_RS02570 0.38 -0.2
480,188 + MMP_RS02570 0.41 +0.1
480,239 + MMP_RS02570 0.44 +0.1
480,269 + MMP_RS02570 0.46 +0.1
480,269 + MMP_RS02570 0.46 -0.0
480,286 - MMP_RS02570 0.47 +0.2
480,287 + MMP_RS02570 0.47 +0.2
480,287 + MMP_RS02570 0.47 +0.1
480,287 + MMP_RS02570 0.47 -0.0
480,291 + MMP_RS02570 0.48 -0.0
480,291 + MMP_RS02570 0.48 -0.1
480,545 + MMP_RS02570 0.63 +0.1
480,597 - MMP_RS02570 0.66 +0.0
480,597 - MMP_RS02570 0.66 +0.0
480,597 - MMP_RS02570 0.66 +0.3
480,598 + MMP_RS02570 0.66 -0.0
480,604 - MMP_RS02570 0.67 +0.1
480,621 - MMP_RS02570 0.68 -0.0
480,621 - MMP_RS02570 0.68 +0.1
480,622 + MMP_RS02570 0.68 +0.1
480,830 + MMP_RS02570 0.81 +0.1
480,834 + MMP_RS02570 0.81 +0.1
480,834 + MMP_RS02570 0.81 -0.1
480,838 - MMP_RS02570 0.81 -0.3
480,839 + MMP_RS02570 0.81 -0.2
480,868 + MMP_RS02570 0.83 -0.2
480,879 + MMP_RS02570 0.84 +0.2
480,879 + MMP_RS02570 0.84 +0.1
480,881 + MMP_RS02570 0.84 +0.0
480,932 - MMP_RS02570 0.87 +0.9
480,933 + MMP_RS02570 0.87 +0.1
481,109 - +0.2
481,114 - +0.1
481,114 - +0.0
481,114 - +0.1
481,115 + -0.0
481,178 - +0.0
481,178 - +0.6
481,198 - +0.3
481,198 - +0.3
481,199 + +0.7
481,199 + -0.5
481,260 + +0.1
481,262 + +0.3
481,295 + -0.4
481,308 - +0.3
481,309 + +0.0
481,309 + +0.7
481,311 + +0.2
481,459 - -0.1
481,482 - -0.0
481,482 - +0.0
481,482 - +0.5
481,483 + +0.3
481,529 - -0.1
481,529 - +0.4
481,530 + -0.1
481,530 + +0.2
481,604 - +0.1
481,613 - -0.0
481,690 + +0.3
481,737 + -0.0
481,784 - MMP_RS02575 0.14 -0.2
481,787 + MMP_RS02575 0.14 +0.3
481,838 - MMP_RS02575 0.21 +1.2
481,882 + MMP_RS02575 0.26 +0.3
481,958 - MMP_RS02575 0.35 -0.1
481,958 - MMP_RS02575 0.35 -0.1
481,962 + MMP_RS02575 0.36 +0.1
481,974 + MMP_RS02575 0.37 +0.1
482,070 + MMP_RS02575 0.49 +0.1

Or see this region's nucleotide sequence