Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01625 and MMP_RS01630 are separated by 65 nucleotides MMP_RS01630 and MMP_RS01635 are separated by 46 nucleotides MMP_RS01635 and MMP_RS01640 are separated by 5 nucleotides
MMP_RS01625: MMP_RS01625 - rubredoxin, at 301,467 to 301,604
_RS01625
MMP_RS01630: MMP_RS01630 - N-glycosylase/DNA lyase, at 301,670 to 302,428
_RS01630
MMP_RS01635: MMP_RS01635 - thiamine pyrophosphate-dependent enzyme, at 302,475 to 303,335
_RS01635
MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053
_RS01640
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 301.530 kb on - strand, within MMP_RS01625 at 301.568 kb on + strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.582 kb on + strand, within MMP_RS01625 at 301.604 kb on - strand at 301.604 kb on - strand at 301.642 kb on - strand at 301.651 kb on + strand at 301.671 kb on - strand at 301.672 kb on + strand at 301.692 kb on + strand at 301.777 kb on - strand, within MMP_RS01630 at 302.105 kb on - strand, within MMP_RS01630 at 302.233 kb on - strand, within MMP_RS01630 at 302.237 kb on + strand, within MMP_RS01630 at 302.252 kb on - strand, within MMP_RS01630 at 302.338 kb on - strand, within MMP_RS01630 at 302.408 kb on - strand at 302.447 kb on - strand at 302.455 kb on + strand at 302.459 kb on + strand at 302.558 kb on + strand at 302.702 kb on + strand, within MMP_RS01635 at 302.748 kb on - strand, within MMP_RS01635 at 302.755 kb on + strand, within MMP_RS01635 at 302.958 kb on + strand, within MMP_RS01635 at 302.966 kb on + strand, within MMP_RS01635 at 302.966 kb on + strand, within MMP_RS01635 at 302.985 kb on - strand, within MMP_RS01635 at 303.047 kb on + strand, within MMP_RS01635 at 303.301 kb on + strand at 303.449 kb on - strand at 303.612 kb on - strand, within MMP_RS01640 at 304.001 kb on + strand, within MMP_RS01640 at 304.051 kb on + strand, within MMP_RS01640 at 304.052 kb on - strand, within MMP_RS01640 at 304.092 kb on + strand, within MMP_RS01640 at 304.160 kb on - strand, within MMP_RS01640 at 304.163 kb on - strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.284 kb on + strand, within MMP_RS01640 at 304.313 kb on - strand, within MMP_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 301,530 - MMP_RS01625 0.46 +0.0 301,568 + MMP_RS01625 0.73 +0.0 301,569 - MMP_RS01625 0.74 +0.0 301,569 - MMP_RS01625 0.74 -0.3 301,569 - MMP_RS01625 0.74 +0.6 301,569 - MMP_RS01625 0.74 +0.5 301,569 - MMP_RS01625 0.74 +0.0 301,569 - MMP_RS01625 0.74 +0.7 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 +0.4 301,569 - MMP_RS01625 0.74 -0.0 301,569 - MMP_RS01625 0.74 +0.4 301,569 - MMP_RS01625 0.74 -0.1 301,569 - MMP_RS01625 0.74 -0.5 301,569 - MMP_RS01625 0.74 +0.3 301,569 - MMP_RS01625 0.74 -0.6 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 -0.0 301,569 - MMP_RS01625 0.74 -0.3 301,570 + MMP_RS01625 0.75 +0.6 301,570 + MMP_RS01625 0.75 +0.3 301,570 + MMP_RS01625 0.75 -0.1 301,570 + MMP_RS01625 0.75 +0.2 301,570 + MMP_RS01625 0.75 -2.0 301,570 + MMP_RS01625 0.75 +0.1 301,570 + MMP_RS01625 0.75 -0.3 301,570 + MMP_RS01625 0.75 -0.3 301,570 + MMP_RS01625 0.75 -0.6 301,570 + MMP_RS01625 0.75 +0.2 301,570 + MMP_RS01625 0.75 +0.2 301,582 + MMP_RS01625 0.83 -0.2 301,604 - -0.0 301,604 - +0.2 301,642 - -0.3 301,651 + -0.0 301,671 - -0.4 301,672 + +0.2 301,692 + -0.5 301,777 - MMP_RS01630 0.14 -0.5 302,105 - MMP_RS01630 0.57 +0.4 302,233 - MMP_RS01630 0.74 +0.2 302,237 + MMP_RS01630 0.75 +0.1 302,252 - MMP_RS01630 0.77 +0.4 302,338 - MMP_RS01630 0.88 -0.2 302,408 - -0.1 302,447 - +0.4 302,455 + -0.4 302,459 + +0.3 302,558 + -0.0 302,702 + MMP_RS01635 0.26 +0.1 302,748 - MMP_RS01635 0.32 -0.1 302,755 + MMP_RS01635 0.33 +0.2 302,958 + MMP_RS01635 0.56 +0.1 302,966 + MMP_RS01635 0.57 +0.1 302,966 + MMP_RS01635 0.57 -0.3 302,985 - MMP_RS01635 0.59 -0.1 303,047 + MMP_RS01635 0.66 -0.0 303,301 + -0.5 303,449 - +0.3 303,612 - MMP_RS01640 0.16 -0.3 304,001 + MMP_RS01640 0.39 +0.7 304,051 + MMP_RS01640 0.41 +0.3 304,052 - MMP_RS01640 0.42 -0.0 304,092 + MMP_RS01640 0.44 +0.2 304,160 - MMP_RS01640 0.48 -0.1 304,163 - MMP_RS01640 0.48 +0.1 304,284 + MMP_RS01640 0.55 +0.0 304,284 + MMP_RS01640 0.55 +0.7 304,313 - MMP_RS01640 0.57 +0.3
Or see this region's nucleotide sequence