Strain Fitness in Pantoea sp. MT58 around IAI47_20520

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20515 and IAI47_20520 are separated by 43 nucleotidesIAI47_20520 and IAI47_20525 are separated by 362 nucleotides IAI47_20515: IAI47_20515 - maltoporin, at 351,904 to 353,205 _20515 IAI47_20520: IAI47_20520 - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 353,249 to 354,358 _20520 IAI47_20525: IAI47_20525 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 354,721 to 355,911 _20525 Position (kb) 353 354 355Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 352.293 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.358 kb on + strand, within IAI47_20515at 352.374 kb on + strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.476 kb on + strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.529 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.657 kb on - strand, within IAI47_20515at 352.722 kb on + strand, within IAI47_20515at 352.770 kb on + strand, within IAI47_20515at 352.771 kb on - strand, within IAI47_20515at 352.778 kb on + strand, within IAI47_20515at 352.779 kb on - strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.881 kb on + strand, within IAI47_20515at 352.938 kb on - strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.997 kb on - strand, within IAI47_20515at 353.012 kb on + strand, within IAI47_20515at 353.013 kb on - strand, within IAI47_20515at 353.039 kb on + strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.125 kb on - strandat 353.200 kb on + strandat 353.201 kb on - strandat 353.232 kb on + strandat 353.251 kb on - strandat 353.269 kb on - strandat 353.380 kb on - strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.592 kb on - strand, within IAI47_20520at 353.660 kb on - strand, within IAI47_20520at 353.688 kb on + strand, within IAI47_20520at 353.694 kb on + strand, within IAI47_20520at 353.793 kb on + strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.819 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.100 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.260 kb on + strandat 354.260 kb on + strandat 354.260 kb on + strandat 354.261 kb on - strandat 354.283 kb on + strandat 354.295 kb on + strandat 354.295 kb on + strandat 354.296 kb on - strandat 354.341 kb on + strandat 354.341 kb on + strandat 354.342 kb on - strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.373 kb on + strandat 354.374 kb on - strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.381 kb on + strandat 354.382 kb on - strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.422 kb on + strandat 354.423 kb on - strandat 354.577 kb on + strandat 354.578 kb on - strandat 354.578 kb on - strandat 354.589 kb on + strandat 354.635 kb on + strandat 354.636 kb on - strandat 354.636 kb on - strandat 354.667 kb on + strandat 354.668 kb on - strandat 354.721 kb on - strandat 354.721 kb on - strandat 354.847 kb on + strand, within IAI47_20525at 354.848 kb on - strand, within IAI47_20525at 354.897 kb on + strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.898 kb on - strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.937 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.975 kb on + strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 354.976 kb on - strand, within IAI47_20525at 355.102 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.148 kb on - strand, within IAI47_20525at 355.206 kb on + strand, within IAI47_20525at 355.207 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.240 kb on - strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.261 kb on + strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.262 kb on - strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.297 kb on + strand, within IAI47_20525at 355.298 kb on - strand, within IAI47_20525at 355.324 kb on + strand, within IAI47_20525

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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352,293 - IAI47_20515 0.30 -0.7
352,293 - IAI47_20515 0.30 -0.6
352,304 + IAI47_20515 0.31 -0.3
352,304 + IAI47_20515 0.31 -0.0
352,304 + IAI47_20515 0.31 -2.5
352,304 + IAI47_20515 0.31 -0.2
352,304 + IAI47_20515 0.31 -2.9
352,304 + IAI47_20515 0.31 +0.5
352,304 + IAI47_20515 0.31 +1.7
352,304 + IAI47_20515 0.31 +0.4
352,304 + IAI47_20515 0.31 +1.6
352,305 - IAI47_20515 0.31 +0.9
352,305 - IAI47_20515 0.31 -0.1
352,305 - IAI47_20515 0.31 -1.1
352,305 - IAI47_20515 0.31 -2.2
352,305 - IAI47_20515 0.31 +1.8
352,305 - IAI47_20515 0.31 +0.6
352,358 + IAI47_20515 0.35 -0.8
352,374 + IAI47_20515 0.36 -1.2
352,375 - IAI47_20515 0.36 +0.5
352,375 - IAI47_20515 0.36 -1.5
352,434 - IAI47_20515 0.41 -0.0
352,434 - IAI47_20515 0.41 +0.6
352,434 - IAI47_20515 0.41 -1.6
352,454 + IAI47_20515 0.42 -0.9
352,454 + IAI47_20515 0.42 -1.0
352,455 - IAI47_20515 0.42 +0.7
352,455 - IAI47_20515 0.42 -2.2
352,476 + IAI47_20515 0.44 +1.7
352,477 - IAI47_20515 0.44 +1.1
352,477 - IAI47_20515 0.44 +0.0
352,477 - IAI47_20515 0.44 +0.4
352,529 + IAI47_20515 0.48 +0.8
352,556 + IAI47_20515 0.50 -1.2
352,556 + IAI47_20515 0.50 +0.4
352,557 - IAI47_20515 0.50 +0.6
352,557 - IAI47_20515 0.50 +0.0
352,657 - IAI47_20515 0.58 +0.3
352,722 + IAI47_20515 0.63 +0.6
352,770 + IAI47_20515 0.67 -1.0
352,771 - IAI47_20515 0.67 -0.7
352,778 + IAI47_20515 0.67 -1.0
352,779 - IAI47_20515 0.67 -1.6
352,781 + IAI47_20515 0.67 -0.6
352,781 + IAI47_20515 0.67 -1.0
352,781 + IAI47_20515 0.67 -0.6
352,782 - IAI47_20515 0.67 -0.5
352,782 - IAI47_20515 0.67 +0.1
352,782 - IAI47_20515 0.67 -1.4
352,814 + IAI47_20515 0.70 +1.1
352,814 + IAI47_20515 0.70 -0.6
352,881 + IAI47_20515 0.75 -1.4
352,938 - IAI47_20515 0.79 -1.1
352,958 + IAI47_20515 0.81 -0.8
352,958 + IAI47_20515 0.81 +1.3
352,959 - IAI47_20515 0.81 -1.6
352,959 - IAI47_20515 0.81 -1.6
352,959 - IAI47_20515 0.81 -0.3
352,959 - IAI47_20515 0.81 +0.2
352,997 - IAI47_20515 0.84 -0.4
353,012 + IAI47_20515 0.85 +1.3
353,013 - IAI47_20515 0.85 +0.4
353,039 + IAI47_20515 0.87 +2.0
353,040 - IAI47_20515 0.87 -1.2
353,040 - IAI47_20515 0.87 +0.4
353,043 + IAI47_20515 0.87 -2.1
353,043 + IAI47_20515 0.87 +1.4
353,043 + IAI47_20515 0.87 +0.5
353,043 + IAI47_20515 0.87 -0.2
353,043 + IAI47_20515 0.87 -0.5
353,043 + IAI47_20515 0.87 -2.3
353,043 + IAI47_20515 0.87 -0.1
353,043 + IAI47_20515 0.87 +1.5
353,044 - IAI47_20515 0.88 -2.2
353,044 - IAI47_20515 0.88 -0.5
353,044 - IAI47_20515 0.88 -2.0
353,125 - +2.0
353,200 + -0.3
353,201 - -3.2
353,232 + -1.0
353,251 - -1.6
353,269 - +2.0
353,380 - IAI47_20520 0.12 -1.1
353,524 + IAI47_20520 0.25 -0.4
353,524 + IAI47_20520 0.25 -1.4
353,524 + IAI47_20520 0.25 +0.0
353,524 + IAI47_20520 0.25 -2.6
353,524 + IAI47_20520 0.25 -2.3
353,524 + IAI47_20520 0.25 +0.7
353,525 - IAI47_20520 0.25 -1.0
353,525 - IAI47_20520 0.25 +0.4
353,525 - IAI47_20520 0.25 -2.7
353,525 - IAI47_20520 0.25 +0.0
353,525 - IAI47_20520 0.25 -1.8
353,525 - IAI47_20520 0.25 +0.5
353,525 - IAI47_20520 0.25 -1.2
353,525 - IAI47_20520 0.25 -1.4
353,525 - IAI47_20520 0.25 -2.2
353,525 - IAI47_20520 0.25 +2.2
353,525 - IAI47_20520 0.25 +0.7
353,592 - IAI47_20520 0.31 +0.9
353,660 - IAI47_20520 0.37 +1.5
353,688 + IAI47_20520 0.40 -1.8
353,694 + IAI47_20520 0.40 -1.8
353,793 + IAI47_20520 0.49 +1.5
353,794 - IAI47_20520 0.49 +0.4
353,794 - IAI47_20520 0.49 -2.1
353,819 - IAI47_20520 0.51 +1.4
354,074 - IAI47_20520 0.74 -0.4
354,074 - IAI47_20520 0.74 +0.3
354,074 - IAI47_20520 0.74 -2.2
354,100 - IAI47_20520 0.77 -0.0
354,109 - IAI47_20520 0.77 +1.0
354,109 - IAI47_20520 0.77 -0.4
354,109 - IAI47_20520 0.77 +1.1
354,109 - IAI47_20520 0.77 -1.1
354,260 + +0.8
354,260 + -0.9
354,260 + -1.2
354,261 - -0.8
354,283 + -0.5
354,295 + -2.2
354,295 + -0.8
354,296 - +0.6
354,341 + +0.2
354,341 + -1.0
354,342 - +0.5
354,373 + +0.1
354,373 + -1.6
354,373 + +0.6
354,373 + +1.4
354,373 + +0.6
354,373 + -0.7
354,374 - -1.2
354,381 + -2.4
354,381 + -0.9
354,381 + +0.7
354,381 + +0.8
354,382 - +0.8
354,422 + +2.4
354,422 + +0.5
354,422 + +0.9
354,422 + +1.7
354,422 + -0.7
354,423 - +0.4
354,577 + -0.7
354,578 - +0.4
354,578 - +1.4
354,589 + +0.4
354,635 + -0.8
354,636 - -2.3
354,636 - -0.4
354,667 + -2.7
354,668 - -1.4
354,721 - +1.9
354,721 - +0.7
354,847 + IAI47_20525 0.11 -2.4
354,848 - IAI47_20525 0.11 -1.8
354,897 + IAI47_20525 0.15 -1.2
354,898 - IAI47_20525 0.15 -0.1
354,898 - IAI47_20525 0.15 +2.0
354,937 + IAI47_20525 0.18 +1.7
354,937 + IAI47_20525 0.18 -0.2
354,975 + IAI47_20525 0.21 +0.4
354,975 + IAI47_20525 0.21 +2.0
354,975 + IAI47_20525 0.21 +3.0
354,976 - IAI47_20525 0.21 -1.8
354,976 - IAI47_20525 0.21 +1.4
355,102 - IAI47_20525 0.32 -2.4
355,148 - IAI47_20525 0.36 -1.0
355,148 - IAI47_20525 0.36 +0.6
355,206 + IAI47_20525 0.41 -0.3
355,207 - IAI47_20525 0.41 +3.1
355,240 - IAI47_20525 0.44 -1.1
355,240 - IAI47_20525 0.44 +1.4
355,240 - IAI47_20525 0.44 +1.4
355,261 + IAI47_20525 0.45 -1.7
355,261 + IAI47_20525 0.45 -2.0
355,261 + IAI47_20525 0.45 -1.4
355,262 - IAI47_20525 0.45 -0.6
355,262 - IAI47_20525 0.45 +1.3
355,262 - IAI47_20525 0.45 -0.5
355,262 - IAI47_20525 0.45 -0.5
355,297 + IAI47_20525 0.48 -0.8
355,297 + IAI47_20525 0.48 +0.2
355,298 - IAI47_20525 0.48 +0.4
355,324 + IAI47_20525 0.51 -1.2

Or see this region's nucleotide sequence