Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19180 and IAI47_19185 are separated by 382 nucleotides IAI47_19185 and IAI47_19190 are separated by 139 nucleotides IAI47_19190 and IAI47_19195 are separated by 20 nucleotides
IAI47_19180: IAI47_19180 - HAMP domain-containing protein, at 63,209 to 65,146
_19180
IAI47_19185: IAI47_19185 - GNAT family N-acetyltransferase, at 65,529 to 65,966
_19185
IAI47_19190: IAI47_19190 - cupin domain-containing protein, at 66,106 to 66,419
_19190
IAI47_19195: IAI47_19195 - acetyltransferase, at 66,440 to 66,883
_19195
Position (kb) 65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 64.621 kb on + strand, within IAI47_19180 at 64.622 kb on - strand, within IAI47_19180 at 64.633 kb on - strand, within IAI47_19180 at 64.633 kb on - strand, within IAI47_19180 at 64.633 kb on - strand, within IAI47_19180 at 64.636 kb on + strand, within IAI47_19180 at 64.636 kb on + strand, within IAI47_19180 at 64.636 kb on + strand, within IAI47_19180 at 64.636 kb on + strand, within IAI47_19180 at 64.637 kb on - strand, within IAI47_19180 at 64.637 kb on - strand, within IAI47_19180 at 64.637 kb on - strand at 64.637 kb on - strand, within IAI47_19180 at 64.637 kb on - strand, within IAI47_19180 at 64.637 kb on - strand, within IAI47_19180 at 64.643 kb on - strand, within IAI47_19180 at 64.665 kb on + strand, within IAI47_19180 at 64.801 kb on + strand, within IAI47_19180 at 64.815 kb on - strand, within IAI47_19180 at 64.868 kb on - strand, within IAI47_19180 at 64.868 kb on - strand, within IAI47_19180 at 64.868 kb on - strand, within IAI47_19180 at 64.870 kb on + strand, within IAI47_19180 at 64.871 kb on - strand, within IAI47_19180 at 64.871 kb on - strand, within IAI47_19180 at 64.871 kb on - strand, within IAI47_19180 at 64.871 kb on - strand, within IAI47_19180 at 64.885 kb on + strand, within IAI47_19180 at 64.885 kb on + strand, within IAI47_19180 at 64.892 kb on + strand, within IAI47_19180 at 64.893 kb on - strand, within IAI47_19180 at 64.893 kb on - strand, within IAI47_19180 at 64.893 kb on - strand, within IAI47_19180 at 64.893 kb on - strand, within IAI47_19180 at 64.928 kb on - strand, within IAI47_19180 at 64.928 kb on - strand, within IAI47_19180 at 64.958 kb on + strand at 65.029 kb on + strand at 65.029 kb on + strand at 65.031 kb on + strand at 65.031 kb on + strand at 65.031 kb on + strand at 65.036 kb on - strand at 65.036 kb on - strand at 65.036 kb on - strand at 65.038 kb on + strand at 65.038 kb on + strand at 65.125 kb on + strand at 65.125 kb on + strand at 65.141 kb on - strand at 65.150 kb on + strand at 65.173 kb on - strand at 65.175 kb on - strand at 65.207 kb on + strand at 65.208 kb on - strand at 65.252 kb on + strand at 65.253 kb on - strand at 65.268 kb on + strand at 65.306 kb on - strand at 65.306 kb on - strand at 65.306 kb on - strand at 65.310 kb on - strand at 65.325 kb on + strand at 65.326 kb on - strand at 65.329 kb on - strand at 65.332 kb on + strand at 65.333 kb on - strand at 65.333 kb on - strand at 65.339 kb on + strand at 65.339 kb on + strand at 65.340 kb on - strand at 65.340 kb on - strand at 65.346 kb on + strand at 65.363 kb on - strand at 65.388 kb on - strand at 65.388 kb on - strand at 65.390 kb on - strand at 65.454 kb on - strand at 65.513 kb on + strand at 65.515 kb on + strand at 65.516 kb on - strand at 65.526 kb on + strand at 65.557 kb on + strand at 65.590 kb on + strand, within IAI47_19185 at 65.659 kb on + strand, within IAI47_19185 at 65.659 kb on + strand, within IAI47_19185 at 65.659 kb on + strand, within IAI47_19185 at 65.660 kb on - strand, within IAI47_19185 at 65.665 kb on + strand, within IAI47_19185 at 65.665 kb on + strand, within IAI47_19185 at 65.666 kb on - strand, within IAI47_19185 at 65.669 kb on - strand, within IAI47_19185 at 65.738 kb on + strand, within IAI47_19185 at 65.739 kb on - strand, within IAI47_19185 at 65.740 kb on + strand, within IAI47_19185 at 65.741 kb on - strand, within IAI47_19185 at 65.741 kb on - strand, within IAI47_19185 at 65.751 kb on + strand, within IAI47_19185 at 65.751 kb on + strand, within IAI47_19185 at 65.752 kb on - strand, within IAI47_19185 at 65.752 kb on - strand, within IAI47_19185 at 65.756 kb on - strand, within IAI47_19185 at 65.834 kb on + strand, within IAI47_19185 at 65.835 kb on - strand, within IAI47_19185 at 65.848 kb on + strand, within IAI47_19185 at 65.849 kb on - strand, within IAI47_19185 at 65.849 kb on - strand, within IAI47_19185 at 65.849 kb on - strand, within IAI47_19185 at 65.850 kb on + strand, within IAI47_19185 at 65.850 kb on + strand, within IAI47_19185 at 65.851 kb on - strand, within IAI47_19185 at 65.858 kb on + strand, within IAI47_19185 at 65.858 kb on + strand, within IAI47_19185 at 65.859 kb on - strand, within IAI47_19185 at 65.859 kb on - strand, within IAI47_19185 at 65.881 kb on - strand, within IAI47_19185 at 65.912 kb on + strand, within IAI47_19185 at 65.912 kb on + strand, within IAI47_19185 at 65.913 kb on - strand, within IAI47_19185 at 65.913 kb on - strand, within IAI47_19185 at 65.914 kb on + strand, within IAI47_19185 at 65.914 kb on + strand, within IAI47_19185 at 65.915 kb on - strand, within IAI47_19185 at 65.948 kb on + strand at 65.963 kb on - strand at 65.963 kb on - strand at 65.963 kb on - strand at 65.964 kb on + strand at 65.965 kb on - strand at 65.965 kb on - strand at 65.965 kb on - strand at 65.965 kb on - strand at 65.986 kb on + strand at 65.987 kb on - strand at 66.053 kb on - strand at 66.058 kb on - strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.073 kb on + strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.074 kb on - strand at 66.075 kb on + strand at 66.075 kb on + strand at 66.075 kb on + strand at 66.075 kb on + strand at 66.076 kb on - strand at 66.076 kb on - strand at 66.076 kb on - strand at 66.082 kb on - strand at 66.082 kb on - strand at 66.091 kb on + strand at 66.091 kb on + strand at 66.092 kb on - strand at 66.092 kb on - strand at 66.092 kb on - strand at 66.092 kb on - strand at 66.092 kb on - strand at 66.270 kb on + strand, within IAI47_19190 at 66.270 kb on + strand, within IAI47_19190 at 66.307 kb on + strand, within IAI47_19190 at 66.307 kb on + strand, within IAI47_19190 at 66.307 kb on + strand, within IAI47_19190 at 66.307 kb on + strand, within IAI47_19190 at 66.307 kb on + strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.308 kb on - strand, within IAI47_19190 at 66.323 kb on + strand, within IAI47_19190 at 66.323 kb on + strand, within IAI47_19190 at 66.323 kb on + strand, within IAI47_19190 at 66.323 kb on + strand, within IAI47_19190 at 66.323 kb on + strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.324 kb on - strand, within IAI47_19190 at 66.326 kb on - strand, within IAI47_19190 at 66.326 kb on - strand, within IAI47_19190 at 66.326 kb on - strand, within IAI47_19190 at 66.333 kb on - strand, within IAI47_19190 at 66.387 kb on + strand, within IAI47_19190 at 66.387 kb on + strand, within IAI47_19190 at 66.387 kb on + strand, within IAI47_19190 at 66.387 kb on + strand, within IAI47_19190 at 66.387 kb on + strand, within IAI47_19190 at 66.388 kb on - strand at 66.388 kb on - strand at 66.417 kb on + strand at 66.418 kb on - strand at 66.420 kb on + strand at 66.421 kb on - strand at 66.441 kb on + strand at 66.441 kb on + strand at 66.442 kb on - strand at 66.449 kb on - strand at 66.449 kb on - strand at 66.451 kb on + strand at 66.461 kb on + strand at 66.478 kb on - strand at 66.529 kb on + strand, within IAI47_19195 at 66.530 kb on + strand, within IAI47_19195 at 66.530 kb on - strand, within IAI47_19195 at 66.530 kb on - strand, within IAI47_19195 at 66.538 kb on - strand, within IAI47_19195 at 66.569 kb on + strand, within IAI47_19195 at 66.569 kb on + strand, within IAI47_19195 at 66.570 kb on - strand, within IAI47_19195 at 66.570 kb on - strand, within IAI47_19195 at 66.581 kb on + strand, within IAI47_19195 at 66.581 kb on + strand, within IAI47_19195 at 66.582 kb on - strand, within IAI47_19195 at 66.582 kb on - strand, within IAI47_19195 at 66.582 kb on - strand, within IAI47_19195 at 66.582 kb on - strand, within IAI47_19195 at 66.582 kb on - strand, within IAI47_19195 at 66.608 kb on + strand, within IAI47_19195 at 66.608 kb on + strand, within IAI47_19195 at 66.608 kb on + strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.609 kb on - strand, within IAI47_19195 at 66.654 kb on - strand, within IAI47_19195 at 66.654 kb on - strand, within IAI47_19195 at 66.701 kb on + strand, within IAI47_19195 at 66.701 kb on + strand, within IAI47_19195 at 66.702 kb on - strand, within IAI47_19195 at 66.702 kb on - strand, within IAI47_19195 at 66.702 kb on - strand, within IAI47_19195 at 66.702 kb on - strand, within IAI47_19195 at 66.702 kb on - strand, within IAI47_19195 at 66.731 kb on + strand, within IAI47_19195 at 66.732 kb on - strand, within IAI47_19195 at 66.808 kb on + strand, within IAI47_19195 at 66.894 kb on + strand at 66.907 kb on - strand at 66.918 kb on + strand at 66.918 kb on + strand at 66.931 kb on + strand at 66.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 64,621 + IAI47_19180 0.73 -0.5 64,622 - IAI47_19180 0.73 -1.9 64,633 - IAI47_19180 0.73 -2.4 64,633 - IAI47_19180 0.73 +0.4 64,633 - IAI47_19180 0.73 +1.3 64,636 + IAI47_19180 0.74 -2.4 64,636 + IAI47_19180 0.74 -1.3 64,636 + IAI47_19180 0.74 -0.6 64,636 + IAI47_19180 0.74 -1.2 64,637 - IAI47_19180 0.74 -0.7 64,637 - IAI47_19180 0.74 -0.7 64,637 - +1.4 64,637 - IAI47_19180 0.74 +1.4 64,637 - IAI47_19180 0.74 +2.1 64,637 - IAI47_19180 0.74 -2.3 64,643 - IAI47_19180 0.74 -1.9 64,665 + IAI47_19180 0.75 +1.4 64,801 + IAI47_19180 0.82 -0.8 64,815 - IAI47_19180 0.83 -1.4 64,868 - IAI47_19180 0.86 +0.2 64,868 - IAI47_19180 0.86 +2.2 64,868 - IAI47_19180 0.86 -1.6 64,870 + IAI47_19180 0.86 +0.4 64,871 - IAI47_19180 0.86 -1.2 64,871 - IAI47_19180 0.86 -2.4 64,871 - IAI47_19180 0.86 +1.2 64,871 - IAI47_19180 0.86 -1.9 64,885 + IAI47_19180 0.86 -1.4 64,885 + IAI47_19180 0.86 -0.6 64,892 + IAI47_19180 0.87 +2.0 64,893 - IAI47_19180 0.87 -1.2 64,893 - IAI47_19180 0.87 -0.9 64,893 - IAI47_19180 0.87 +0.1 64,893 - IAI47_19180 0.87 +2.0 64,928 - IAI47_19180 0.89 -0.9 64,928 - IAI47_19180 0.89 +0.2 64,958 + -1.5 65,029 + +1.1 65,029 + -1.9 65,031 + +0.6 65,031 + -0.5 65,031 + -0.9 65,036 - +0.1 65,036 - +1.1 65,036 - -1.8 65,038 + +0.6 65,038 + -2.9 65,125 + -1.6 65,125 + -0.2 65,141 - +1.0 65,150 + -1.9 65,173 - -1.8 65,175 - +2.4 65,207 + +0.7 65,208 - -1.7 65,252 + +0.5 65,253 - -0.9 65,268 + +1.2 65,306 - +0.6 65,306 - -1.9 65,306 - +0.4 65,310 - -0.4 65,325 + +0.8 65,326 - +0.4 65,329 - -0.9 65,332 + +2.0 65,333 - -0.5 65,333 - -0.6 65,339 + +0.8 65,339 + +0.4 65,340 - +1.1 65,340 - +2.0 65,346 + -0.2 65,363 - -2.5 65,388 - +1.0 65,388 - -1.2 65,390 - +3.0 65,454 - +0.4 65,513 + +2.1 65,515 + -0.2 65,516 - -2.6 65,526 + +0.4 65,557 + -0.4 65,590 + IAI47_19185 0.14 +4.4 65,659 + IAI47_19185 0.30 +0.5 65,659 + IAI47_19185 0.30 -0.4 65,659 + IAI47_19185 0.30 +1.8 65,660 - IAI47_19185 0.30 -0.6 65,665 + IAI47_19185 0.31 -1.2 65,665 + IAI47_19185 0.31 -0.2 65,666 - IAI47_19185 0.31 -2.6 65,669 - IAI47_19185 0.32 +2.2 65,738 + IAI47_19185 0.48 +0.1 65,739 - IAI47_19185 0.48 -1.2 65,740 + IAI47_19185 0.48 -1.4 65,741 - IAI47_19185 0.48 -1.6 65,741 - IAI47_19185 0.48 +1.1 65,751 + IAI47_19185 0.51 -0.3 65,751 + IAI47_19185 0.51 +0.8 65,752 - IAI47_19185 0.51 +1.2 65,752 - IAI47_19185 0.51 +1.0 65,756 - IAI47_19185 0.52 +1.0 65,834 + IAI47_19185 0.70 +1.4 65,835 - IAI47_19185 0.70 +0.7 65,848 + IAI47_19185 0.73 -0.2 65,849 - IAI47_19185 0.73 +0.6 65,849 - IAI47_19185 0.73 -1.2 65,849 - IAI47_19185 0.73 +0.1 65,850 + IAI47_19185 0.73 +0.1 65,850 + IAI47_19185 0.73 +0.8 65,851 - IAI47_19185 0.74 +1.7 65,858 + IAI47_19185 0.75 -0.1 65,858 + IAI47_19185 0.75 +0.4 65,859 - IAI47_19185 0.75 -1.6 65,859 - IAI47_19185 0.75 -2.4 65,881 - IAI47_19185 0.80 -2.2 65,912 + IAI47_19185 0.87 -1.0 65,912 + IAI47_19185 0.87 -2.4 65,913 - IAI47_19185 0.88 +0.9 65,913 - IAI47_19185 0.88 -1.9 65,914 + IAI47_19185 0.88 -0.7 65,914 + IAI47_19185 0.88 -2.5 65,915 - IAI47_19185 0.88 +0.8 65,948 + +0.6 65,963 - +1.0 65,963 - +1.5 65,963 - +0.6 65,964 + -0.2 65,965 - -0.6 65,965 - -0.9 65,965 - -2.2 65,965 - -1.6 65,986 + -2.1 65,987 - -1.9 66,053 - -0.5 66,058 - +1.3 66,073 + +1.8 66,073 + -2.2 66,073 + -0.6 66,073 + +0.1 66,073 + -0.9 66,073 + +1.5 66,073 + +0.6 66,073 + -0.3 66,073 + -1.9 66,073 + +0.1 66,073 + +0.7 66,073 + -2.9 66,073 + -0.9 66,073 + -2.6 66,073 + -2.4 66,073 + +1.0 66,073 + +0.3 66,073 + +2.9 66,073 + +1.4 66,074 - +1.5 66,074 - +0.8 66,074 - -1.3 66,074 - -1.4 66,074 - -2.7 66,074 - -0.9 66,074 - -1.8 66,074 - +0.7 66,074 - -1.3 66,074 - -2.5 66,074 - +0.1 66,074 - +0.4 66,074 - +1.2 66,074 - -1.1 66,074 - +1.4 66,074 - +1.4 66,074 - +1.4 66,075 + +0.7 66,075 + +0.6 66,075 + +0.4 66,075 + -1.2 66,076 - -1.8 66,076 - +1.4 66,076 - +3.2 66,082 - -2.6 66,082 - -0.8 66,091 + -0.6 66,091 + +1.1 66,092 - -0.8 66,092 - -2.6 66,092 - -0.2 66,092 - +0.1 66,092 - -0.2 66,270 + IAI47_19190 0.52 +1.0 66,270 + IAI47_19190 0.52 -1.1 66,307 + IAI47_19190 0.64 -1.0 66,307 + IAI47_19190 0.64 +1.0 66,307 + IAI47_19190 0.64 +0.7 66,307 + IAI47_19190 0.64 -0.9 66,307 + IAI47_19190 0.64 +0.7 66,308 - IAI47_19190 0.64 -1.2 66,308 - IAI47_19190 0.64 -2.7 66,308 - IAI47_19190 0.64 +0.4 66,308 - IAI47_19190 0.64 -0.7 66,308 - IAI47_19190 0.64 +1.8 66,308 - IAI47_19190 0.64 +0.3 66,323 + IAI47_19190 0.69 +0.5 66,323 + IAI47_19190 0.69 -2.8 66,323 + IAI47_19190 0.69 -2.6 66,323 + IAI47_19190 0.69 -0.9 66,323 + IAI47_19190 0.69 -0.6 66,324 - IAI47_19190 0.69 -0.6 66,324 - IAI47_19190 0.69 +0.9 66,324 - IAI47_19190 0.69 -0.4 66,324 - IAI47_19190 0.69 +1.0 66,324 - IAI47_19190 0.69 +0.8 66,324 - IAI47_19190 0.69 -1.9 66,326 - IAI47_19190 0.70 +0.0 66,326 - IAI47_19190 0.70 -0.4 66,326 - IAI47_19190 0.70 +2.7 66,333 - IAI47_19190 0.72 -2.7 66,387 + IAI47_19190 0.89 +0.3 66,387 + IAI47_19190 0.89 +0.7 66,387 + IAI47_19190 0.89 -1.9 66,387 + IAI47_19190 0.89 -3.7 66,387 + IAI47_19190 0.89 +0.7 66,388 - -2.2 66,388 - +0.6 66,417 + -0.2 66,418 - +0.1 66,420 + +0.2 66,421 - -0.9 66,441 + -0.2 66,441 + -0.0 66,442 - -1.8 66,449 - +0.1 66,449 - +0.1 66,451 + -0.3 66,461 + -1.3 66,478 - -0.9 66,529 + IAI47_19195 0.20 +0.8 66,530 + IAI47_19195 0.20 +0.8 66,530 - IAI47_19195 0.20 -0.8 66,530 - IAI47_19195 0.20 -2.2 66,538 - IAI47_19195 0.22 +3.2 66,569 + IAI47_19195 0.29 -2.7 66,569 + IAI47_19195 0.29 -0.8 66,570 - IAI47_19195 0.29 -1.2 66,570 - IAI47_19195 0.29 -2.6 66,581 + IAI47_19195 0.32 +1.0 66,581 + IAI47_19195 0.32 +1.0 66,582 - IAI47_19195 0.32 +1.1 66,582 - IAI47_19195 0.32 -2.8 66,582 - IAI47_19195 0.32 +0.6 66,582 - IAI47_19195 0.32 +0.0 66,582 - IAI47_19195 0.32 +0.1 66,608 + IAI47_19195 0.38 +0.4 66,608 + IAI47_19195 0.38 +2.5 66,608 + IAI47_19195 0.38 +0.6 66,609 - IAI47_19195 0.38 +2.3 66,609 - IAI47_19195 0.38 -0.5 66,609 - IAI47_19195 0.38 -1.7 66,609 - IAI47_19195 0.38 -2.9 66,609 - IAI47_19195 0.38 +1.0 66,609 - IAI47_19195 0.38 -0.1 66,609 - IAI47_19195 0.38 -2.3 66,609 - IAI47_19195 0.38 +2.0 66,609 - IAI47_19195 0.38 -0.2 66,654 - IAI47_19195 0.48 +1.1 66,654 - IAI47_19195 0.48 +2.0 66,701 + IAI47_19195 0.59 +0.6 66,701 + IAI47_19195 0.59 +0.8 66,702 - IAI47_19195 0.59 -0.6 66,702 - IAI47_19195 0.59 -0.3 66,702 - IAI47_19195 0.59 -1.4 66,702 - IAI47_19195 0.59 -1.2 66,702 - IAI47_19195 0.59 +1.0 66,731 + IAI47_19195 0.66 -0.2 66,732 - IAI47_19195 0.66 -2.3 66,808 + IAI47_19195 0.83 -1.4 66,894 + +0.4 66,907 - +1.1 66,918 + +0.4 66,918 + -1.6 66,931 + -3.1 66,940 + +0.1
Or see this region's nucleotide sequence