Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18895 and IAI47_18900 are separated by 288 nucleotides IAI47_18900 and IAI47_18905 are separated by 50 nucleotides IAI47_18905 and IAI47_18910 are separated by 245 nucleotides
IAI47_18895: IAI47_18895 - MFS transporter, at 16,213 to 17,406
_18895
IAI47_18900: IAI47_18900 - VOC family protein, at 17,695 to 18,087
_18900
IAI47_18905: IAI47_18905 - pyridoxamine 5'-phosphate oxidase family protein, at 18,138 to 18,755
_18905
IAI47_18910: IAI47_18910 - MCP four helix bundle domain-containing protein, at 19,001 to 20,554
_18910
Position (kb) 17
18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 16.721 kb on + strand, within IAI47_18895 at 16.856 kb on - strand, within IAI47_18895 at 16.891 kb on + strand, within IAI47_18895 at 16.891 kb on + strand, within IAI47_18895 at 16.891 kb on + strand, within IAI47_18895 at 16.891 kb on + strand, within IAI47_18895 at 16.892 kb on - strand, within IAI47_18895 at 16.894 kb on + strand, within IAI47_18895 at 16.894 kb on + strand, within IAI47_18895 at 16.894 kb on + strand, within IAI47_18895 at 16.894 kb on + strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.895 kb on - strand, within IAI47_18895 at 16.907 kb on + strand, within IAI47_18895 at 16.907 kb on + strand, within IAI47_18895 at 16.908 kb on - strand, within IAI47_18895 at 16.908 kb on - strand, within IAI47_18895 at 16.920 kb on + strand, within IAI47_18895 at 16.926 kb on - strand, within IAI47_18895 at 17.020 kb on - strand, within IAI47_18895 at 17.098 kb on + strand, within IAI47_18895 at 17.098 kb on + strand, within IAI47_18895 at 17.098 kb on + strand, within IAI47_18895 at 17.099 kb on - strand, within IAI47_18895 at 17.099 kb on - strand, within IAI47_18895 at 17.134 kb on + strand, within IAI47_18895 at 17.135 kb on - strand, within IAI47_18895 at 17.203 kb on - strand, within IAI47_18895 at 17.240 kb on + strand, within IAI47_18895 at 17.240 kb on + strand, within IAI47_18895 at 17.240 kb on + strand, within IAI47_18895 at 17.240 kb on + strand, within IAI47_18895 at 17.240 kb on + strand, within IAI47_18895 at 17.241 kb on - strand, within IAI47_18895 at 17.241 kb on - strand, within IAI47_18895 at 17.251 kb on + strand, within IAI47_18895 at 17.294 kb on + strand at 17.294 kb on + strand at 17.303 kb on + strand at 17.353 kb on - strand at 17.358 kb on + strand at 17.359 kb on - strand at 17.406 kb on + strand at 17.446 kb on + strand at 17.446 kb on + strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.448 kb on + strand at 17.448 kb on + strand at 17.449 kb on - strand at 17.449 kb on - strand at 17.504 kb on - strand at 17.559 kb on + strand at 17.574 kb on + strand at 17.574 kb on + strand at 17.575 kb on - strand at 17.575 kb on - strand at 17.575 kb on - strand at 17.576 kb on + strand at 17.576 kb on + strand at 17.576 kb on + strand at 17.577 kb on - strand at 17.577 kb on - strand at 17.641 kb on + strand at 17.653 kb on + strand at 17.654 kb on - strand at 17.654 kb on - strand at 17.677 kb on - strand at 17.693 kb on + strand at 17.694 kb on - strand at 17.703 kb on - strand at 17.718 kb on + strand at 17.718 kb on + strand at 17.718 kb on + strand at 17.718 kb on + strand at 17.718 kb on + strand at 17.719 kb on - strand at 17.719 kb on - strand at 17.729 kb on - strand at 17.729 kb on - strand at 17.729 kb on - strand at 17.729 kb on - strand at 17.729 kb on - strand at 17.729 kb on - strand at 17.739 kb on + strand, within IAI47_18900 at 17.740 kb on - strand, within IAI47_18900 at 17.740 kb on - strand, within IAI47_18900 at 17.761 kb on + strand, within IAI47_18900 at 17.761 kb on + strand, within IAI47_18900 at 17.761 kb on + strand, within IAI47_18900 at 17.761 kb on + strand, within IAI47_18900 at 17.761 kb on + strand, within IAI47_18900 at 17.762 kb on - strand, within IAI47_18900 at 17.762 kb on - strand, within IAI47_18900 at 17.763 kb on + strand, within IAI47_18900 at 17.763 kb on + strand, within IAI47_18900 at 17.763 kb on + strand, within IAI47_18900 at 17.763 kb on + strand, within IAI47_18900 at 17.763 kb on + strand, within IAI47_18900 at 17.764 kb on - strand, within IAI47_18900 at 17.801 kb on - strand, within IAI47_18900 at 17.801 kb on - strand, within IAI47_18900 at 17.832 kb on + strand, within IAI47_18900 at 17.832 kb on + strand, within IAI47_18900 at 17.832 kb on + strand, within IAI47_18900 at 17.833 kb on - strand, within IAI47_18900 at 17.833 kb on - strand, within IAI47_18900 at 17.833 kb on - strand, within IAI47_18900 at 17.834 kb on + strand, within IAI47_18900 at 17.834 kb on + strand, within IAI47_18900 at 17.835 kb on - strand, within IAI47_18900 at 17.835 kb on - strand, within IAI47_18900 at 17.835 kb on - strand, within IAI47_18900 at 17.835 kb on - strand, within IAI47_18900 at 17.883 kb on - strand, within IAI47_18900 at 17.955 kb on + strand, within IAI47_18900 at 17.955 kb on + strand, within IAI47_18900 at 17.955 kb on + strand, within IAI47_18900 at 17.955 kb on + strand, within IAI47_18900 at 17.956 kb on - strand, within IAI47_18900 at 17.956 kb on - strand, within IAI47_18900 at 17.956 kb on - strand, within IAI47_18900 at 17.956 kb on - strand, within IAI47_18900 at 17.956 kb on - strand, within IAI47_18900 at 18.001 kb on + strand, within IAI47_18900 at 18.024 kb on + strand, within IAI47_18900 at 18.043 kb on + strand, within IAI47_18900 at 18.044 kb on - strand, within IAI47_18900 at 18.044 kb on - strand, within IAI47_18900 at 18.049 kb on + strand at 18.050 kb on - strand at 18.050 kb on - strand at 18.084 kb on - strand at 18.107 kb on - strand at 18.119 kb on + strand at 18.120 kb on - strand at 18.120 kb on - strand at 18.120 kb on - strand at 18.120 kb on - strand at 18.143 kb on - strand at 18.143 kb on - strand at 18.249 kb on + strand, within IAI47_18905 at 18.330 kb on + strand, within IAI47_18905 at 18.330 kb on + strand, within IAI47_18905 at 18.375 kb on + strand, within IAI47_18905 at 18.413 kb on + strand, within IAI47_18905 at 18.413 kb on + strand, within IAI47_18905 at 18.413 kb on + strand, within IAI47_18905 at 18.413 kb on + strand, within IAI47_18905 at 18.413 kb on + strand, within IAI47_18905 at 18.414 kb on - strand, within IAI47_18905 at 18.414 kb on - strand, within IAI47_18905 at 18.417 kb on + strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.418 kb on - strand, within IAI47_18905 at 18.432 kb on - strand, within IAI47_18905 at 18.432 kb on - strand, within IAI47_18905 at 18.476 kb on + strand, within IAI47_18905 at 18.476 kb on + strand, within IAI47_18905 at 18.479 kb on + strand, within IAI47_18905 at 18.479 kb on + strand, within IAI47_18905 at 18.479 kb on + strand, within IAI47_18905 at 18.480 kb on - strand, within IAI47_18905 at 18.635 kb on + strand, within IAI47_18905 at 18.636 kb on - strand, within IAI47_18905 at 18.636 kb on - strand, within IAI47_18905 at 18.636 kb on - strand, within IAI47_18905 at 18.659 kb on + strand, within IAI47_18905 at 18.659 kb on + strand, within IAI47_18905 at 18.660 kb on - strand, within IAI47_18905 at 18.660 kb on - strand, within IAI47_18905 at 18.660 kb on - strand, within IAI47_18905 at 18.660 kb on - strand, within IAI47_18905 at 18.660 kb on - strand, within IAI47_18905 at 18.675 kb on - strand, within IAI47_18905 at 18.703 kb on + strand at 18.704 kb on - strand at 18.704 kb on - strand at 18.704 kb on - strand at 18.776 kb on + strand at 18.777 kb on - strand at 18.789 kb on + strand at 18.801 kb on + strand at 18.802 kb on - strand at 18.802 kb on - strand at 18.815 kb on + strand at 18.815 kb on + strand at 18.815 kb on + strand at 18.815 kb on + strand at 18.816 kb on - strand at 18.816 kb on - strand at 18.827 kb on + strand at 18.828 kb on - strand at 18.873 kb on + strand at 18.873 kb on + strand at 18.874 kb on - strand at 18.874 kb on - strand at 18.890 kb on + strand at 18.908 kb on - strand at 18.915 kb on + strand at 18.928 kb on + strand at 18.928 kb on + strand at 18.928 kb on + strand at 18.928 kb on + strand at 18.929 kb on - strand at 18.929 kb on - strand at 18.961 kb on + strand at 18.962 kb on - strand at 18.962 kb on - strand at 18.966 kb on + strand at 18.966 kb on + strand at 18.966 kb on + strand at 18.966 kb on + strand at 18.966 kb on + strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.967 kb on - strand at 18.974 kb on + strand at 18.974 kb on + strand at 18.975 kb on - strand at 18.975 kb on - strand at 18.975 kb on - strand at 18.977 kb on + strand at 18.977 kb on + strand at 18.977 kb on + strand at 18.977 kb on + strand at 18.977 kb on + strand at 18.977 kb on + strand at 18.978 kb on - strand at 18.978 kb on - strand at 18.978 kb on - strand at 18.978 kb on - strand at 18.978 kb on - strand at 18.978 kb on - strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.022 kb on + strand at 19.023 kb on - strand at 19.023 kb on - strand at 19.023 kb on - strand at 19.055 kb on - strand at 19.077 kb on + strand at 19.077 kb on + strand at 19.077 kb on + strand at 19.078 kb on - strand at 19.078 kb on - strand at 19.078 kb on - strand at 19.078 kb on - strand at 19.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 16,721 + IAI47_18895 0.43 -2.3 16,856 - IAI47_18895 0.54 +1.4 16,891 + IAI47_18895 0.57 +0.1 16,891 + IAI47_18895 0.57 -0.3 16,891 + IAI47_18895 0.57 -0.2 16,891 + IAI47_18895 0.57 +0.1 16,892 - IAI47_18895 0.57 -0.6 16,894 + IAI47_18895 0.57 +0.2 16,894 + IAI47_18895 0.57 -0.5 16,894 + IAI47_18895 0.57 +1.4 16,894 + IAI47_18895 0.57 +1.2 16,895 - IAI47_18895 0.57 -0.0 16,895 - IAI47_18895 0.57 +2.0 16,895 - IAI47_18895 0.57 +0.2 16,895 - IAI47_18895 0.57 -0.6 16,895 - IAI47_18895 0.57 +1.3 16,895 - IAI47_18895 0.57 +1.4 16,907 + IAI47_18895 0.58 -0.9 16,907 + IAI47_18895 0.58 -2.4 16,908 - IAI47_18895 0.58 -0.4 16,908 - IAI47_18895 0.58 -2.1 16,920 + IAI47_18895 0.59 -0.4 16,926 - IAI47_18895 0.60 +1.2 17,020 - IAI47_18895 0.68 +0.6 17,098 + IAI47_18895 0.74 +1.8 17,098 + IAI47_18895 0.74 -1.5 17,098 + IAI47_18895 0.74 -2.1 17,099 - IAI47_18895 0.74 +0.4 17,099 - IAI47_18895 0.74 -0.3 17,134 + IAI47_18895 0.77 +3.8 17,135 - IAI47_18895 0.77 +0.7 17,203 - IAI47_18895 0.83 -0.4 17,240 + IAI47_18895 0.86 -1.9 17,240 + IAI47_18895 0.86 -2.4 17,240 + IAI47_18895 0.86 -0.0 17,240 + IAI47_18895 0.86 -0.6 17,240 + IAI47_18895 0.86 -1.2 17,241 - IAI47_18895 0.86 -1.0 17,241 - IAI47_18895 0.86 +0.0 17,251 + IAI47_18895 0.87 -0.2 17,294 + -0.2 17,294 + +1.4 17,303 + +1.4 17,353 - -1.8 17,358 + +1.1 17,359 - +1.7 17,406 + +1.2 17,446 + -0.9 17,446 + +0.4 17,447 - -1.0 17,447 - -3.3 17,447 - -1.2 17,447 - -0.6 17,447 - -1.4 17,447 - -1.2 17,448 + -2.1 17,448 + +1.6 17,449 - +0.7 17,449 - -0.4 17,504 - +1.2 17,559 + +1.5 17,574 + -1.4 17,574 + +0.6 17,575 - +3.0 17,575 - +0.5 17,575 - -1.2 17,576 + +1.8 17,576 + -0.8 17,576 + +0.9 17,577 - +1.4 17,577 - -2.2 17,641 + -0.2 17,653 + +1.4 17,654 - -0.3 17,654 - -1.4 17,677 - -2.1 17,693 + -0.2 17,694 - +2.0 17,703 - +2.1 17,718 + -1.4 17,718 + +2.0 17,718 + +1.6 17,718 + -2.1 17,718 + +2.4 17,719 - +1.4 17,719 - -1.2 17,729 - +0.2 17,729 - -1.1 17,729 - -0.2 17,729 - +1.2 17,729 - -0.0 17,729 - +0.6 17,739 + IAI47_18900 0.11 -2.3 17,740 - IAI47_18900 0.11 -0.2 17,740 - IAI47_18900 0.11 -1.3 17,761 + IAI47_18900 0.17 -3.4 17,761 + IAI47_18900 0.17 -2.5 17,761 + IAI47_18900 0.17 -1.9 17,761 + IAI47_18900 0.17 -0.6 17,761 + IAI47_18900 0.17 -0.8 17,762 - IAI47_18900 0.17 -2.2 17,762 - IAI47_18900 0.17 -1.6 17,763 + IAI47_18900 0.17 +1.1 17,763 + IAI47_18900 0.17 -1.3 17,763 + IAI47_18900 0.17 -0.5 17,763 + IAI47_18900 0.17 +0.1 17,763 + IAI47_18900 0.17 -0.0 17,764 - IAI47_18900 0.18 -1.2 17,801 - IAI47_18900 0.27 -1.0 17,801 - IAI47_18900 0.27 +0.7 17,832 + IAI47_18900 0.35 -1.7 17,832 + IAI47_18900 0.35 -0.6 17,832 + IAI47_18900 0.35 -2.3 17,833 - IAI47_18900 0.35 +0.3 17,833 - IAI47_18900 0.35 +0.5 17,833 - IAI47_18900 0.35 +2.6 17,834 + IAI47_18900 0.35 -1.5 17,834 + IAI47_18900 0.35 +0.7 17,835 - IAI47_18900 0.36 +3.0 17,835 - IAI47_18900 0.36 -0.2 17,835 - IAI47_18900 0.36 -3.1 17,835 - IAI47_18900 0.36 +1.4 17,883 - IAI47_18900 0.48 +0.4 17,955 + IAI47_18900 0.66 -0.7 17,955 + IAI47_18900 0.66 -2.2 17,955 + IAI47_18900 0.66 -2.7 17,955 + IAI47_18900 0.66 +0.5 17,956 - IAI47_18900 0.66 -0.8 17,956 - IAI47_18900 0.66 -1.8 17,956 - IAI47_18900 0.66 -4.1 17,956 - IAI47_18900 0.66 -2.2 17,956 - IAI47_18900 0.66 +0.4 18,001 + IAI47_18900 0.78 +0.9 18,024 + IAI47_18900 0.84 -2.9 18,043 + IAI47_18900 0.89 -0.9 18,044 - IAI47_18900 0.89 +1.7 18,044 - IAI47_18900 0.89 -1.4 18,049 + +1.6 18,050 - +1.0 18,050 - +0.6 18,084 - -0.2 18,107 - +1.7 18,119 + -0.4 18,120 - -0.4 18,120 - +0.1 18,120 - -0.7 18,120 - +1.6 18,143 - -0.3 18,143 - -0.6 18,249 + IAI47_18905 0.18 -0.0 18,330 + IAI47_18905 0.31 +0.5 18,330 + IAI47_18905 0.31 -0.5 18,375 + IAI47_18905 0.38 +1.8 18,413 + IAI47_18905 0.44 -1.5 18,413 + IAI47_18905 0.44 +1.6 18,413 + IAI47_18905 0.44 -1.1 18,413 + IAI47_18905 0.44 -2.2 18,413 + IAI47_18905 0.44 +0.5 18,414 - IAI47_18905 0.45 -0.7 18,414 - IAI47_18905 0.45 -0.2 18,417 + IAI47_18905 0.45 -1.1 18,418 - IAI47_18905 0.45 -0.6 18,418 - IAI47_18905 0.45 -3.4 18,418 - IAI47_18905 0.45 -2.3 18,418 - IAI47_18905 0.45 +0.6 18,418 - IAI47_18905 0.45 -1.4 18,418 - IAI47_18905 0.45 +3.8 18,418 - IAI47_18905 0.45 -0.2 18,432 - IAI47_18905 0.48 +0.7 18,432 - IAI47_18905 0.48 +0.0 18,476 + IAI47_18905 0.55 -1.2 18,476 + IAI47_18905 0.55 -1.1 18,479 + IAI47_18905 0.55 +0.9 18,479 + IAI47_18905 0.55 +0.8 18,479 + IAI47_18905 0.55 +1.1 18,480 - IAI47_18905 0.55 -0.5 18,635 + IAI47_18905 0.80 -2.6 18,636 - IAI47_18905 0.81 -0.6 18,636 - IAI47_18905 0.81 -0.9 18,636 - IAI47_18905 0.81 +3.4 18,659 + IAI47_18905 0.84 +1.2 18,659 + IAI47_18905 0.84 -0.1 18,660 - IAI47_18905 0.84 -2.6 18,660 - IAI47_18905 0.84 -1.2 18,660 - IAI47_18905 0.84 +0.7 18,660 - IAI47_18905 0.84 +1.0 18,660 - IAI47_18905 0.84 -0.7 18,675 - IAI47_18905 0.87 +0.4 18,703 + +1.2 18,704 - -0.6 18,704 - -0.6 18,704 - +0.4 18,776 + +2.1 18,777 - +0.5 18,789 + +3.4 18,801 + -0.6 18,802 - +2.4 18,802 - +1.5 18,815 + -0.1 18,815 + -2.1 18,815 + +0.0 18,815 + -0.2 18,816 - +0.4 18,816 - +0.5 18,827 + -2.9 18,828 - +1.1 18,873 + +0.2 18,873 + -2.3 18,874 - +0.1 18,874 - -1.5 18,890 + +1.5 18,908 - +0.8 18,915 + -0.2 18,928 + -0.6 18,928 + +0.7 18,928 + -1.6 18,928 + +0.5 18,929 - +1.9 18,929 - -0.7 18,961 + +0.3 18,962 - -1.6 18,962 - +0.9 18,966 + -0.2 18,966 + -0.9 18,966 + +1.0 18,966 + -1.6 18,966 + +0.3 18,967 - -0.9 18,967 - +0.1 18,967 - +1.4 18,967 - -0.2 18,967 - +0.4 18,967 - -0.8 18,967 - -1.2 18,967 - -1.2 18,967 - +0.8 18,967 - -2.9 18,974 + +1.8 18,974 + -1.8 18,975 - -1.5 18,975 - +0.7 18,975 - +0.4 18,977 + -0.9 18,977 + -1.2 18,977 + -2.2 18,977 + +0.7 18,977 + -2.3 18,977 + +2.8 18,978 - +0.3 18,978 - -0.9 18,978 - +3.1 18,978 - -2.5 18,978 - +1.1 18,978 - +1.8 19,022 + +1.3 19,022 + +1.8 19,022 + +0.1 19,022 + +0.7 19,022 + +1.0 19,023 - -0.7 19,023 - +0.7 19,023 - +1.4 19,055 - -0.7 19,077 + -1.8 19,077 + -1.3 19,077 + -0.4 19,078 - +1.4 19,078 - -1.1 19,078 - -2.0 19,078 - -1.6 19,078 - +0.2
Or see this region's nucleotide sequence