Strain Fitness in Pantoea sp. MT58 around IAI47_12995

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,748,232	+		IAI47_12985	0.84	+0.6
2,748,232	+		IAI47_12985	0.84	-0.8
2,748,232	+		IAI47_12985	0.84	-1.7
2,748,233	-		IAI47_12985	0.85	+0.9
2,748,233	-		IAI47_12985	0.85	+0.5
2,748,233	-		IAI47_12985	0.85	+0.1
2,748,335	+				+0.2
2,748,335	+				-0.0
2,748,335	+				+0.5
2,748,335	+				-0.3
2,748,335	+				+2.5
2,748,335	+				+0.4
2,748,335	+				+1.3
2,748,335	+				+0.5
2,748,335	+				+1.1
2,748,335	+				+0.7
2,748,335	+				+0.7
2,748,336	-				+3.4
2,748,336	-				-2.9
2,748,336	-				-1.5
2,748,336	-				+0.9
2,748,336	-				-0.2
2,748,336	-				+1.1
2,748,336	-				+1.9
2,748,336	-				-1.3
2,748,336	-				-3.0
2,748,336	-				-0.5
2,748,336	-				+0.8
2,748,336	-				+0.9
2,748,337	+				+2.0
2,748,337	+				-0.0
2,748,337	+				+3.3
2,748,337	+				+0.4
2,748,337	+				+3.7
2,748,337	+				-0.1
2,748,337	+				+1.2
2,748,338	-				-0.5
2,748,338	-				-0.1
2,748,338	-				+0.5
2,748,338	-				+1.3
2,748,338	-				+0.3
2,748,338	-				-1.6
2,748,338	-				+2.5
2,748,338	-				+0.8
2,748,338	-				-0.2
2,748,338	-				-0.3
2,748,342	+				+0.5
2,748,342	+				-1.2
2,748,342	+				+0.1
2,748,342	+				-0.5
2,748,342	+				-3.0
2,748,342	+				-1.0
2,748,342	+				-2.9
2,748,343	-				+0.7
2,748,343	-				+1.7
2,748,343	-				-1.8
2,748,343	-				+1.5
2,748,343	-				+0.7
2,748,343	-				+0.1
2,748,343	-				-1.5
2,748,343	-				+0.4
2,748,347	+				+0.8
2,748,348	-				+2.1
2,748,348	-				+0.7
2,748,374	+				-3.0
2,748,375	-				-0.1
2,748,443	+		IAI47_12990	0.10	+0.6
2,748,443	+		IAI47_12990	0.10	-0.9
2,748,470	+		IAI47_12990	0.15	-0.4
2,748,470	+		IAI47_12990	0.15	-1.6
2,748,470	+		IAI47_12990	0.15	+0.7
2,748,531	+		IAI47_12990	0.27	+0.4
2,748,601	-		IAI47_12990	0.40	+4.2
2,748,601	-		IAI47_12990	0.40	+1.8
2,748,618	+		IAI47_12990	0.43	-1.2
2,748,618	+		IAI47_12990	0.43	+1.0
2,748,619	-		IAI47_12990	0.43	-0.5
2,748,619	-		IAI47_12990	0.43	+0.9
2,748,731	+		IAI47_12990	0.64	+0.5
2,748,731	+		IAI47_12990	0.64	+2.5
2,748,731	+		IAI47_12990	0.64	-2.3
2,748,731	+		IAI47_12990	0.64	+1.9
2,748,731	+		IAI47_12990	0.64	+0.5
2,748,731	+		IAI47_12990	0.64	+0.5
2,748,732	-		IAI47_12990	0.64	+0.3
2,748,732	-		IAI47_12990	0.64	-1.8
2,748,732	-		IAI47_12990	0.64	+0.7
2,748,732	-		IAI47_12990	0.64	+0.0
2,748,732	-		IAI47_12990	0.64	+3.2
2,748,732	-		IAI47_12990	0.64	+0.7
2,748,732	-		IAI47_12990	0.64	+2.5
2,748,734	+		IAI47_12990	0.64	+3.5
2,748,735	-		IAI47_12990	0.64	+2.4
2,748,858	+		IAI47_12990	0.87	+1.0
2,748,858	+		IAI47_12990	0.87	-0.1
2,748,858	+		IAI47_12990	0.87	-1.8
2,748,859	-		IAI47_12990	0.87	+2.3
2,748,859	-		IAI47_12990	0.87	-2.5
2,748,924	+				-0.5
2,748,924	+				-0.7
2,748,932	+				-0.0
2,748,933	-				-2.8
2,748,938	-				-1.8
2,748,944	-				-0.9
2,749,032	+				+1.5
2,749,032	+				-0.9
2,749,032	+				+0.4
2,749,032	+				+0.1
2,749,032	+				+0.8
2,749,033	-				+2.0
2,749,033	-				+0.0
2,749,033	-				+0.9
2,749,033	-				-1.6
2,749,040	+				+2.1
2,749,055	+				+0.2
2,749,055	+				-0.8
2,749,055	+				-1.5
2,749,055	+				+1.5
2,749,055	+				+0.6
2,749,055	+				+0.0
2,749,055	+				+0.5
2,749,055	+				+1.0
2,749,055	+				-0.6
2,749,055	+				+2.3
2,749,055	+				-1.8
2,749,055	+				+1.0
2,749,055	+				+0.3
2,749,055	+				-1.6
2,749,056	-				+2.0
2,749,056	-				-1.0
2,749,056	-				+0.4
2,749,056	-				-0.6
2,749,056	-				-0.5
2,749,056	-				+0.4
2,749,056	-				-0.8
2,749,056	-				+0.2
2,749,056	-				+0.8
2,749,086	+				-1.5
2,749,087	-				-1.3
2,749,094	+				-0.4
2,749,095	-				-0.1
2,749,099	-				-1.0
2,749,099	-				+0.7
2,749,112	+				-0.5
2,749,113	-				-0.9
2,749,127	+				-1.5
2,749,130	+				-1.7
2,749,130	+				+1.0
2,749,130	+				+0.5
2,749,130	+				-0.0
2,749,130	+				+0.3
2,749,130	+				-0.0
2,749,130	+				+0.8
2,749,130	+				-1.0
2,749,131	-				+1.1
2,749,131	-				-3.0
2,749,131	-				+2.8
2,749,131	-				-2.3
2,749,131	-				-0.8
2,749,131	-				-0.3
2,749,134	+				+0.6
2,749,135	-				+0.8
2,749,135	-				+3.4
2,749,156	-				+1.5
2,749,172	+				-1.5
2,749,173	-				+0.5
2,749,173	-				+2.5
2,749,173	-				+0.1
2,749,183	+				+0.4
2,749,183	+				+1.1
2,749,183	+				-0.0
2,749,183	+				-0.7
2,749,183	+				-0.8
2,749,183	+				-0.4
2,749,183	+				-2.5
2,749,183	+				+2.4
2,749,183	+				-1.9
2,749,183	+				-0.3
2,749,183	+				-2.2
2,749,184	-				+2.1
2,749,184	-				+0.2
2,749,184	-				+0.5
2,749,184	-				-1.8
2,749,184	-				-0.7
2,749,184	-				-1.2
2,749,244	+		IAI47_12995	0.13	+1.3
2,749,245	-		IAI47_12995	0.13	+1.1
2,749,293	+		IAI47_12995	0.20	-0.5
2,749,420	+		IAI47_12995	0.37	-0.3
2,749,420	+		IAI47_12995	0.37	+2.6
2,749,420	+		IAI47_12995	0.37	+0.5
2,749,420	+		IAI47_12995	0.37	-0.5
2,749,421	-		IAI47_12995	0.37	-0.8
2,749,421	-		IAI47_12995	0.37	-0.0
2,749,421	-		IAI47_12995	0.37	-2.7
2,749,422	+		IAI47_12995	0.37	+0.8
2,749,422	+		IAI47_12995	0.37	-0.5
2,749,422	+		IAI47_12995	0.37	+1.3
2,749,422	+		IAI47_12995	0.37	-2.9
2,749,423	-		IAI47_12995	0.37	+1.8
2,749,423	-		IAI47_12995	0.37	-1.6
2,749,423	-		IAI47_12995	0.37	+0.8
2,749,423	-		IAI47_12995	0.37	-0.7
2,749,423	-		IAI47_12995	0.37	-1.3
2,749,423	-		IAI47_12995	0.37	+0.7
2,749,423	-		IAI47_12995	0.37	-0.8
2,749,549	+		IAI47_12995	0.55	-0.1
2,749,549	+		IAI47_12995	0.55	-1.4
2,749,550	-		IAI47_12995	0.55	+0.3
2,749,695	+		IAI47_12995	0.75	-2.4
2,749,695	+		IAI47_12995	0.75	-1.5
2,749,695	+		IAI47_12995	0.75	-1.5
2,749,696	-		IAI47_12995	0.75	+0.5
2,749,696	-		IAI47_12995	0.75	+0.2
2,749,764	+		IAI47_12995	0.84	+0.7
2,749,764	+		IAI47_12995	0.84	-0.1
2,749,764	+		IAI47_12995	0.84	-1.5
2,749,765	-		IAI47_12995	0.84	+0.4
2,749,765	-		IAI47_12995	0.84	+1.4
2,749,786	+		IAI47_12995	0.87	-2.5
2,749,786	+		IAI47_12995	0.87	-1.5
2,749,786	+		IAI47_12995	0.87	-0.5
2,749,787	-		IAI47_12995	0.87	+2.9
2,749,787	-		IAI47_12995	0.87	-1.2
2,749,787	-		IAI47_12995	0.87	-1.6
2,749,787	-		IAI47_12995	0.87	-2.0
2,749,787	-		IAI47_12995	0.87	-0.0
2,749,833	+				-0.0
2,749,834	-				+2.0
2,749,865	-				-2.0
2,749,876	+				+0.2
2,749,876	+				+0.2
2,749,876	+				-0.8
2,749,877	-				-1.8
2,749,907	+				-1.0
2,749,907	+				+0.9
2,749,984	+		IAI47_13000	0.12	-0.5
2,749,985	-		IAI47_13000	0.12	-1.4
2,749,985	-		IAI47_13000	0.12	-0.0
2,749,999	+		IAI47_13000	0.14	+1.0
2,749,999	+		IAI47_13000	0.14	-0.3
2,749,999	+		IAI47_13000	0.14	-0.2
2,749,999	+		IAI47_13000	0.14	+2.0
2,750,000	-		IAI47_13000	0.14	+0.4
2,750,000	-		IAI47_13000	0.14	-1.8
2,750,000	-		IAI47_13000	0.14	-3.2
2,750,000	-		IAI47_13000	0.14	+0.5
2,750,000	-		IAI47_13000	0.14	-2.3
2,750,000	-		IAI47_13000	0.14	+0.4
2,750,000	-		IAI47_13000	0.14	-1.0
2,750,000	-		IAI47_13000	0.14	+2.0
2,750,013	+		IAI47_13000	0.16	-1.3
2,750,014	-		IAI47_13000	0.16	+0.8
2,750,014	-		IAI47_13000	0.16	+1.1
2,750,014	-		IAI47_13000	0.16	-1.8
2,750,014	-		IAI47_13000	0.16	+2.0
2,750,058	+		IAI47_13000	0.22	-0.6
2,750,058	+		IAI47_13000	0.22	+0.5
2,750,058	+		IAI47_13000	0.22	+0.0
2,750,058	+		IAI47_13000	0.22	-1.3
2,750,058	+		IAI47_13000	0.22	+0.1
2,750,059	-		IAI47_13000	0.23	+0.1
2,750,059	-		IAI47_13000	0.23	+0.5
2,750,158	+		IAI47_13000	0.36	+0.9
2,750,160	+		IAI47_13000	0.36	-3.1
2,750,203	+		IAI47_13000	0.42	+0.7
2,750,203	+		IAI47_13000	0.42	+1.7
2,750,203	+		IAI47_13000	0.42	-1.9
2,750,203	+		IAI47_13000	0.42	+2.9
2,750,203	+		IAI47_13000	0.42	-1.5
2,750,203	+		IAI47_13000	0.42	-0.5
2,750,203	+		IAI47_13000	0.42	+3.1
2,750,204	-		IAI47_13000	0.42	+0.0
2,750,204	-		IAI47_13000	0.42	-0.0
2,750,204	-		IAI47_13000	0.42	+1.0
2,750,206	+		IAI47_13000	0.43	-2.7
2,750,207	-		IAI47_13000	0.43	+0.3
2,750,241	+		IAI47_13000	0.47	+0.2
2,750,241	+		IAI47_13000	0.47	-2.2
2,750,242	-		IAI47_13000	0.48	-1.5
2,750,242	-		IAI47_13000	0.48	+0.2
2,750,311	+		IAI47_13000	0.57	+1.3
2,750,311	+		IAI47_13000	0.57	-2.6
2,750,311	+		IAI47_13000	0.57	+2.0
2,750,311	+		IAI47_13000	0.57	-1.4
2,750,312	-		IAI47_13000	0.57	-0.1
2,750,312	-		IAI47_13000	0.57	+1.2
2,750,359	+		IAI47_13000	0.64	-1.0
2,750,360	-		IAI47_13000	0.64	-1.8
2,750,360	-		IAI47_13000	0.64	+0.6
2,750,406	-		IAI47_13000	0.70	+0.1
2,750,473	-		IAI47_13000	0.79	-0.0
2,750,479	-		IAI47_13000	0.80	+4.5
2,750,484	+		IAI47_13000	0.81	-0.5
2,750,484	+		IAI47_13000	0.81	+0.9
2,750,484	+		IAI47_13000	0.81	-0.0
2,750,484	+		IAI47_13000	0.81	-0.6
2,750,484	+		IAI47_13000	0.81	+0.6
2,750,484	+		IAI47_13000	0.81	-1.3
2,750,485	-		IAI47_13000	0.81	+1.5
2,750,485	-		IAI47_13000	0.81	-0.9
2,750,485	-		IAI47_13000	0.81	-1.0
2,750,492	-		IAI47_13000	0.82	-1.3
2,750,492	-		IAI47_13000	0.82	+0.3
2,750,492	-		IAI47_13000	0.82	+1.0
2,750,499	+		IAI47_13000	0.83	+0.5
2,750,512	-		IAI47_13000	0.84	-0.8
2,750,530	-		IAI47_13000	0.87	-2.5
2,750,530	-		IAI47_13000	0.87	-0.2
2,750,569	-				+0.1
2,750,587	-				-1.0
2,750,590	+				-0.8
2,750,590	+				+0.5
2,750,590	+				+0.6
2,750,591	-				+0.1
2,750,591	-				+1.4
2,750,591	-				-1.2
2,750,591	-				-1.1
2,750,602	+				-0.5
2,750,602	+				-0.0
2,750,602	+				+0.8
2,750,603	-				-0.6
2,750,603	-				-0.6
2,750,623	+				+0.5
2,750,623	+				-0.0
2,750,623	+				-1.3
2,750,624	-				-1.8
2,750,826	+		IAI47_13005	0.27	+1.5
2,750,827	-		IAI47_13005	0.27	-2.2
2,750,827	-		IAI47_13005	0.27	-0.2
2,750,827	-		IAI47_13005	0.27	+0.3
2,750,827	-		IAI47_13005	0.27	+2.4
2,750,827	-		IAI47_13005	0.27	-0.8
2,750,830	+		IAI47_13005	0.28	+2.8