Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_08110 and IAI47_08115 are separated by 195 nucleotides IAI47_08115 and IAI47_08120 are separated by 253 nucleotides IAI47_08120 and IAI47_08125 are separated by 104 nucleotides
IAI47_08110: IAI47_08110 - anti-adapter protein IraP, at 1,711,615 to 1,711,914
_08110
IAI47_08115: IAI47_08115 - hypothetical protein, at 1,712,110 to 1,712,433
_08115
IAI47_08120: IAI47_08120 - lipoprotein, at 1,712,687 to 1,713,160
_08120
IAI47_08125: IAI47_08125 - alpha-amylase, at 1,713,265 to 1,714,746
_08125
Position (kb) 1712
1713
1714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1711.848 kb on + strand, within IAI47_08110 at 1711.848 kb on + strand, within IAI47_08110 at 1711.848 kb on + strand, within IAI47_08110 at 1711.848 kb on + strand, within IAI47_08110 at 1711.849 kb on - strand, within IAI47_08110 at 1711.849 kb on - strand, within IAI47_08110 at 1711.873 kb on + strand, within IAI47_08110 at 1711.873 kb on + strand, within IAI47_08110 at 1711.873 kb on + strand, within IAI47_08110 at 1711.873 kb on + strand, within IAI47_08110 at 1711.873 kb on + strand, within IAI47_08110 at 1711.874 kb on - strand, within IAI47_08110 at 1711.874 kb on - strand, within IAI47_08110 at 1711.890 kb on + strand at 1711.890 kb on + strand at 1711.912 kb on + strand at 1711.912 kb on + strand at 1711.912 kb on + strand at 1711.912 kb on + strand at 1711.913 kb on - strand at 1711.913 kb on - strand at 1712.026 kb on + strand at 1712.027 kb on - strand at 1712.035 kb on - strand at 1712.044 kb on + strand at 1712.044 kb on + strand at 1712.044 kb on + strand at 1712.044 kb on + strand at 1712.044 kb on + strand at 1712.044 kb on + strand at 1712.045 kb on - strand at 1712.045 kb on - strand at 1712.045 kb on - strand at 1712.045 kb on - strand at 1712.045 kb on - strand at 1712.049 kb on + strand at 1712.049 kb on + strand at 1712.049 kb on + strand at 1712.049 kb on + strand at 1712.049 kb on + strand at 1712.050 kb on - strand at 1712.050 kb on - strand at 1712.058 kb on - strand at 1712.062 kb on + strand at 1712.062 kb on + strand at 1712.062 kb on + strand at 1712.062 kb on + strand at 1712.062 kb on + strand at 1712.063 kb on - strand at 1712.111 kb on + strand at 1712.111 kb on + strand at 1712.111 kb on + strand at 1712.124 kb on + strand at 1712.148 kb on + strand, within IAI47_08115 at 1712.148 kb on + strand, within IAI47_08115 at 1712.149 kb on - strand, within IAI47_08115 at 1712.149 kb on - strand, within IAI47_08115 at 1712.149 kb on - strand, within IAI47_08115 at 1712.177 kb on + strand, within IAI47_08115 at 1712.178 kb on - strand, within IAI47_08115 at 1712.178 kb on - strand, within IAI47_08115 at 1712.178 kb on - strand, within IAI47_08115 at 1712.178 kb on - strand, within IAI47_08115 at 1712.209 kb on - strand, within IAI47_08115 at 1712.209 kb on - strand, within IAI47_08115 at 1712.209 kb on - strand, within IAI47_08115 at 1712.209 kb on - strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.276 kb on + strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.277 kb on - strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.280 kb on + strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.281 kb on - strand, within IAI47_08115 at 1712.347 kb on + strand, within IAI47_08115 at 1712.348 kb on - strand, within IAI47_08115 at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.411 kb on + strand at 1712.412 kb on - strand at 1712.412 kb on - strand at 1712.412 kb on - strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.414 kb on + strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.415 kb on - strand at 1712.434 kb on - strand at 1712.434 kb on - strand at 1712.439 kb on + strand at 1712.439 kb on + strand at 1712.439 kb on + strand at 1712.440 kb on - strand at 1712.440 kb on - strand at 1712.471 kb on + strand at 1712.471 kb on + strand at 1712.508 kb on + strand at 1712.509 kb on - strand at 1712.610 kb on + strand at 1712.610 kb on + strand at 1712.610 kb on + strand at 1712.610 kb on + strand at 1712.611 kb on - strand at 1712.622 kb on - strand at 1712.649 kb on + strand at 1712.675 kb on + strand at 1712.675 kb on + strand at 1713.136 kb on + strand at 1713.145 kb on + strand at 1713.158 kb on + strand at 1713.158 kb on + strand at 1713.172 kb on + strand at 1713.173 kb on - strand at 1713.193 kb on + strand at 1713.193 kb on + strand at 1713.193 kb on + strand at 1713.193 kb on + strand at 1713.193 kb on + strand at 1713.194 kb on - strand at 1713.194 kb on - strand at 1713.194 kb on - strand at 1713.261 kb on + strand at 1713.262 kb on - strand at 1713.262 kb on - strand at 1713.262 kb on - strand at 1713.266 kb on + strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.267 kb on - strand at 1713.365 kb on + strand at 1713.495 kb on + strand, within IAI47_08125 at 1713.495 kb on + strand, within IAI47_08125 at 1713.496 kb on - strand, within IAI47_08125 at 1713.496 kb on - strand, within IAI47_08125 at 1713.520 kb on + strand, within IAI47_08125 at 1713.520 kb on + strand, within IAI47_08125 at 1713.521 kb on - strand, within IAI47_08125 at 1713.533 kb on + strand, within IAI47_08125 at 1713.533 kb on + strand, within IAI47_08125 at 1713.534 kb on - strand, within IAI47_08125 at 1713.586 kb on + strand, within IAI47_08125 at 1713.587 kb on - strand, within IAI47_08125 at 1713.623 kb on + strand, within IAI47_08125 at 1713.624 kb on - strand, within IAI47_08125 at 1713.624 kb on - strand, within IAI47_08125 at 1713.692 kb on + strand, within IAI47_08125 at 1713.692 kb on + strand, within IAI47_08125 at 1713.693 kb on - strand, within IAI47_08125 at 1713.705 kb on + strand, within IAI47_08125 at 1713.705 kb on + strand, within IAI47_08125 at 1713.706 kb on - strand, within IAI47_08125 at 1713.807 kb on + strand, within IAI47_08125 at 1713.830 kb on + strand, within IAI47_08125 at 1713.830 kb on + strand, within IAI47_08125 at 1713.830 kb on + strand, within IAI47_08125 at 1713.830 kb on + strand, within IAI47_08125 at 1713.831 kb on - strand, within IAI47_08125 at 1713.867 kb on + strand, within IAI47_08125 at 1713.867 kb on + strand, within IAI47_08125 at 1713.868 kb on - strand, within IAI47_08125 at 1713.868 kb on - strand, within IAI47_08125 at 1713.868 kb on - strand, within IAI47_08125 at 1713.868 kb on - strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.917 kb on + strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.918 kb on - strand, within IAI47_08125 at 1713.950 kb on + strand, within IAI47_08125 at 1713.951 kb on - strand, within IAI47_08125 at 1713.951 kb on - strand, within IAI47_08125 at 1713.951 kb on - strand, within IAI47_08125 at 1713.963 kb on + strand, within IAI47_08125 at 1713.993 kb on + strand, within IAI47_08125 at 1713.993 kb on + strand, within IAI47_08125 at 1713.994 kb on - strand, within IAI47_08125 at 1713.994 kb on - strand, within IAI47_08125 at 1713.994 kb on - strand, within IAI47_08125 at 1714.013 kb on + strand, within IAI47_08125 at 1714.014 kb on - strand, within IAI47_08125 at 1714.014 kb on - strand, within IAI47_08125 at 1714.014 kb on - strand, within IAI47_08125 at 1714.029 kb on + strand, within IAI47_08125 at 1714.029 kb on + strand, within IAI47_08125 at 1714.030 kb on - strand, within IAI47_08125
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 1,711,848 + IAI47_08110 0.78 -0.0 1,711,848 + IAI47_08110 0.78 -0.1 1,711,848 + IAI47_08110 0.78 -0.3 1,711,848 + IAI47_08110 0.78 +1.0 1,711,849 - IAI47_08110 0.78 +3.1 1,711,849 - IAI47_08110 0.78 +1.1 1,711,873 + IAI47_08110 0.86 +0.1 1,711,873 + IAI47_08110 0.86 +0.8 1,711,873 + IAI47_08110 0.86 -1.1 1,711,873 + IAI47_08110 0.86 +3.3 1,711,873 + IAI47_08110 0.86 -1.1 1,711,874 - IAI47_08110 0.86 -0.9 1,711,874 - IAI47_08110 0.86 -1.9 1,711,890 + -2.1 1,711,890 + -2.3 1,711,912 + -1.1 1,711,912 + +2.1 1,711,912 + +0.8 1,711,912 + +0.1 1,711,913 - +0.6 1,711,913 - +3.4 1,712,026 + +1.5 1,712,027 - +2.3 1,712,035 - +0.3 1,712,044 + +0.9 1,712,044 + +0.5 1,712,044 + +1.0 1,712,044 + +0.4 1,712,044 + +0.6 1,712,044 + +1.6 1,712,045 - -0.6 1,712,045 - +1.0 1,712,045 - +1.2 1,712,045 - -1.3 1,712,045 - -0.5 1,712,049 + -0.1 1,712,049 + -1.6 1,712,049 + +2.9 1,712,049 + -2.5 1,712,049 + +2.2 1,712,050 - +0.3 1,712,050 - +1.0 1,712,058 - -1.8 1,712,062 + +1.9 1,712,062 + +1.5 1,712,062 + +0.1 1,712,062 + +0.4 1,712,062 + -1.0 1,712,063 - -0.3 1,712,111 + -2.8 1,712,111 + +0.9 1,712,111 + +1.1 1,712,124 + -0.1 1,712,148 + IAI47_08115 0.12 -2.4 1,712,148 + IAI47_08115 0.12 +0.1 1,712,149 - IAI47_08115 0.12 +2.0 1,712,149 - IAI47_08115 0.12 +0.2 1,712,149 - IAI47_08115 0.12 -0.9 1,712,177 + IAI47_08115 0.21 -1.1 1,712,178 - IAI47_08115 0.21 +0.2 1,712,178 - IAI47_08115 0.21 -1.1 1,712,178 - IAI47_08115 0.21 -2.5 1,712,178 - IAI47_08115 0.21 +0.1 1,712,209 - IAI47_08115 0.31 +0.9 1,712,209 - IAI47_08115 0.31 -0.5 1,712,209 - IAI47_08115 0.31 -1.7 1,712,209 - IAI47_08115 0.31 +1.4 1,712,276 + IAI47_08115 0.51 -2.3 1,712,276 + IAI47_08115 0.51 +0.0 1,712,276 + IAI47_08115 0.51 -0.1 1,712,276 + IAI47_08115 0.51 +0.5 1,712,276 + IAI47_08115 0.51 +1.3 1,712,276 + IAI47_08115 0.51 -0.1 1,712,277 - IAI47_08115 0.52 +1.3 1,712,277 - IAI47_08115 0.52 +1.0 1,712,277 - IAI47_08115 0.52 +0.4 1,712,277 - IAI47_08115 0.52 +1.9 1,712,277 - IAI47_08115 0.52 +0.6 1,712,277 - IAI47_08115 0.52 -2.4 1,712,277 - IAI47_08115 0.52 -0.3 1,712,277 - IAI47_08115 0.52 -0.6 1,712,280 + IAI47_08115 0.52 +0.4 1,712,280 + IAI47_08115 0.52 +0.3 1,712,280 + IAI47_08115 0.52 +0.0 1,712,280 + IAI47_08115 0.52 +1.4 1,712,280 + IAI47_08115 0.52 +0.2 1,712,280 + IAI47_08115 0.52 -0.4 1,712,280 + IAI47_08115 0.52 +0.9 1,712,280 + IAI47_08115 0.52 +0.2 1,712,281 - IAI47_08115 0.53 +2.6 1,712,281 - IAI47_08115 0.53 -1.2 1,712,281 - IAI47_08115 0.53 -2.8 1,712,281 - IAI47_08115 0.53 +1.5 1,712,281 - IAI47_08115 0.53 +0.9 1,712,281 - IAI47_08115 0.53 -1.1 1,712,347 + IAI47_08115 0.73 +4.0 1,712,348 - IAI47_08115 0.73 +0.4 1,712,411 + +0.6 1,712,411 + +0.6 1,712,411 + +0.2 1,712,411 + -0.9 1,712,411 + -1.7 1,712,411 + -0.1 1,712,411 + +0.6 1,712,412 - +1.8 1,712,412 - +1.7 1,712,412 - -0.1 1,712,414 + -0.9 1,712,414 + +1.4 1,712,414 + -3.1 1,712,414 + +0.6 1,712,414 + +2.3 1,712,414 + +0.6 1,712,414 + -0.1 1,712,415 - +0.7 1,712,415 - -1.1 1,712,415 - +0.9 1,712,415 - -2.4 1,712,415 - -1.1 1,712,415 - -2.0 1,712,415 - +0.4 1,712,434 - +1.1 1,712,434 - +0.2 1,712,439 + +1.2 1,712,439 + -2.3 1,712,439 + -2.1 1,712,440 - -2.7 1,712,440 - +1.7 1,712,471 + -0.1 1,712,471 + +1.3 1,712,508 + -2.0 1,712,509 - -2.1 1,712,610 + +0.3 1,712,610 + -2.0 1,712,610 + -0.9 1,712,610 + +2.4 1,712,611 - +1.9 1,712,622 - +0.4 1,712,649 + -1.1 1,712,675 + +1.6 1,712,675 + +1.6 1,713,136 + +2.2 1,713,145 + -2.0 1,713,158 + -1.1 1,713,158 + +1.0 1,713,172 + +0.8 1,713,173 - -2.6 1,713,193 + +0.8 1,713,193 + -0.4 1,713,193 + -0.6 1,713,193 + -0.4 1,713,193 + +2.2 1,713,194 - +0.8 1,713,194 - -1.6 1,713,194 - +1.3 1,713,261 + +2.2 1,713,262 - -1.3 1,713,262 - +1.1 1,713,262 - +1.4 1,713,266 + -0.9 1,713,267 - +3.4 1,713,267 - -0.4 1,713,267 - -0.1 1,713,267 - +1.4 1,713,267 - +1.9 1,713,267 - +3.3 1,713,267 - +0.1 1,713,365 + -0.1 1,713,495 + IAI47_08125 0.16 +1.3 1,713,495 + IAI47_08125 0.16 +1.1 1,713,496 - IAI47_08125 0.16 +0.1 1,713,496 - IAI47_08125 0.16 -0.0 1,713,520 + IAI47_08125 0.17 -1.0 1,713,520 + IAI47_08125 0.17 +1.4 1,713,521 - IAI47_08125 0.17 -1.9 1,713,533 + IAI47_08125 0.18 +2.9 1,713,533 + IAI47_08125 0.18 -0.6 1,713,534 - IAI47_08125 0.18 -1.7 1,713,586 + IAI47_08125 0.22 +2.0 1,713,587 - IAI47_08125 0.22 +0.8 1,713,623 + IAI47_08125 0.24 +0.4 1,713,624 - IAI47_08125 0.24 +2.1 1,713,624 - IAI47_08125 0.24 +2.0 1,713,692 + IAI47_08125 0.29 +1.4 1,713,692 + IAI47_08125 0.29 -0.6 1,713,693 - IAI47_08125 0.29 -0.6 1,713,705 + IAI47_08125 0.30 -2.7 1,713,705 + IAI47_08125 0.30 +1.7 1,713,706 - IAI47_08125 0.30 +0.3 1,713,807 + IAI47_08125 0.37 +1.7 1,713,830 + IAI47_08125 0.38 +2.0 1,713,830 + IAI47_08125 0.38 -0.4 1,713,830 + IAI47_08125 0.38 -0.6 1,713,830 + IAI47_08125 0.38 -0.1 1,713,831 - IAI47_08125 0.38 -0.9 1,713,867 + IAI47_08125 0.41 +0.0 1,713,867 + IAI47_08125 0.41 +2.8 1,713,868 - IAI47_08125 0.41 -2.6 1,713,868 - IAI47_08125 0.41 +2.6 1,713,868 - IAI47_08125 0.41 -1.1 1,713,868 - IAI47_08125 0.41 +0.2 1,713,917 + IAI47_08125 0.44 -0.8 1,713,917 + IAI47_08125 0.44 +0.6 1,713,917 + IAI47_08125 0.44 +1.1 1,713,917 + IAI47_08125 0.44 -1.4 1,713,917 + IAI47_08125 0.44 +2.2 1,713,917 + IAI47_08125 0.44 +1.0 1,713,917 + IAI47_08125 0.44 +3.8 1,713,917 + IAI47_08125 0.44 +2.4 1,713,917 + IAI47_08125 0.44 -2.7 1,713,917 + IAI47_08125 0.44 -0.4 1,713,917 + IAI47_08125 0.44 +0.6 1,713,917 + IAI47_08125 0.44 -0.1 1,713,918 - IAI47_08125 0.44 -1.1 1,713,918 - IAI47_08125 0.44 +1.4 1,713,918 - IAI47_08125 0.44 -0.1 1,713,918 - IAI47_08125 0.44 -1.6 1,713,918 - IAI47_08125 0.44 +1.6 1,713,918 - IAI47_08125 0.44 +2.0 1,713,918 - IAI47_08125 0.44 +0.9 1,713,918 - IAI47_08125 0.44 -1.7 1,713,918 - IAI47_08125 0.44 +2.4 1,713,918 - IAI47_08125 0.44 +1.0 1,713,918 - IAI47_08125 0.44 +0.1 1,713,918 - IAI47_08125 0.44 +0.6 1,713,950 + IAI47_08125 0.46 +1.4 1,713,951 - IAI47_08125 0.46 -1.5 1,713,951 - IAI47_08125 0.46 +2.4 1,713,951 - IAI47_08125 0.46 +0.6 1,713,963 + IAI47_08125 0.47 +0.2 1,713,993 + IAI47_08125 0.49 +0.7 1,713,993 + IAI47_08125 0.49 -0.1 1,713,994 - IAI47_08125 0.49 +0.9 1,713,994 - IAI47_08125 0.49 +2.7 1,713,994 - IAI47_08125 0.49 -0.9 1,714,013 + IAI47_08125 0.50 -0.8 1,714,014 - IAI47_08125 0.51 +1.2 1,714,014 - IAI47_08125 0.51 -0.4 1,714,014 - IAI47_08125 0.51 +0.4 1,714,029 + IAI47_08125 0.52 +1.1 1,714,029 + IAI47_08125 0.52 -2.3 1,714,030 - IAI47_08125 0.52 +1.6
Or see this region's nucleotide sequence