Strain Fitness in Pantoea sp. MT58 around IAI47_06825

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,423,734	+		IAI47_06820	0.37	-0.3
1,423,734	+		IAI47_06820	0.37	-0.8
1,423,734	+		IAI47_06820	0.37	+0.1
1,423,735	-		IAI47_06820	0.37	-0.9
1,423,735	-		IAI47_06820	0.37	-0.2
1,423,735	-		IAI47_06820	0.37	+0.8
1,423,741	-		IAI47_06820	0.37	-0.6
1,423,762	-		IAI47_06820	0.39	+2.5
1,423,762	-		IAI47_06820	0.39	-1.3
1,423,762	-		IAI47_06820	0.39	+0.8
1,423,762	-		IAI47_06820	0.39	-2.2
1,423,762	-		IAI47_06820	0.39	+2.3
1,423,812	+		IAI47_06820	0.42	+1.0
1,423,879	+		IAI47_06820	0.47	-3.4
1,423,879	+		IAI47_06820	0.47	+1.1
1,423,879	+		IAI47_06820	0.47	+1.0
1,423,879	+		IAI47_06820	0.47	+1.4
1,423,880	-		IAI47_06820	0.47	+0.1
1,424,034	+		IAI47_06820	0.57	+0.2
1,424,035	-		IAI47_06820	0.57	-0.3
1,424,035	-		IAI47_06820	0.57	+1.2
1,424,035	-		IAI47_06820	0.57	+0.5
1,424,035	-		IAI47_06820	0.57	+0.3
1,424,058	+		IAI47_06820	0.59	+1.2
1,424,058	+		IAI47_06820	0.59	-2.0
1,424,058	+		IAI47_06820	0.59	+2.5
1,424,058	+		IAI47_06820	0.59	-0.5
1,424,058	+		IAI47_06820	0.59	-0.0
1,424,058	+		IAI47_06820	0.59	+1.5
1,424,059	-		IAI47_06820	0.59	+2.4
1,424,250	-		IAI47_06820	0.72	-0.2
1,424,277	+		IAI47_06820	0.74	+1.4
1,424,277	+		IAI47_06820	0.74	+0.4
1,424,277	+		IAI47_06820	0.74	+0.0
1,424,278	-		IAI47_06820	0.74	-1.3
1,424,278	-		IAI47_06820	0.74	-0.3
1,424,299	+		IAI47_06820	0.75	-0.5
1,424,299	+		IAI47_06820	0.75	-2.5
1,424,299	+		IAI47_06820	0.75	-1.0
1,424,300	-		IAI47_06820	0.75	+0.5
1,424,300	-		IAI47_06820	0.75	-2.4
1,424,381	-		IAI47_06820	0.81	+0.1
1,424,381	-		IAI47_06820	0.81	+2.3
1,424,434	+		IAI47_06820	0.85	-2.0
1,424,435	-		IAI47_06820	0.85	+2.3
1,424,436	+		IAI47_06820	0.85	+0.8
1,424,436	+		IAI47_06820	0.85	-0.5
1,424,436	+		IAI47_06820	0.85	+1.1
1,424,436	+		IAI47_06820	0.85	+1.4
1,424,436	+		IAI47_06820	0.85	+0.3
1,424,437	-		IAI47_06820	0.85	+0.2
1,424,437	-		IAI47_06820	0.85	+1.2
1,424,437	-		IAI47_06820	0.85	+1.3
1,424,437	-		IAI47_06820	0.85	+2.9
1,424,437	-		IAI47_06820	0.85	-0.4
1,424,437	-		IAI47_06820	0.85	-1.1
1,424,488	+		IAI47_06820	0.88	-1.3
1,424,488	+		IAI47_06820	0.88	+0.9
1,424,488	+		IAI47_06820	0.88	+0.3
1,424,500	-		IAI47_06820	0.89	+2.3
1,424,500	-		IAI47_06820	0.89	-0.2
1,424,531	-				-0.2
1,424,578	+				+2.6
1,424,578	+				-0.3
1,424,578	+				-0.5
1,424,578	+				-0.5
1,424,578	+				-0.0
1,424,578	+				+1.8
1,424,579	-				-0.0
1,424,579	-				-2.5
1,424,579	-				-2.2
1,424,579	-				+0.5
1,424,579	-				-1.6
1,424,582	+				-1.9
1,424,582	+				-0.8
1,424,582	+				-2.2
1,424,582	+				-1.1
1,424,582	+				-1.5
1,424,583	-				+0.2
1,424,583	-				-0.3
1,424,583	-				-1.2
1,424,583	-				-0.8
1,424,583	-				-1.0
1,424,613	+				+1.4
1,424,614	-				+1.8
1,424,614	-				-0.2
1,424,654	+				+2.2
1,424,654	+				-1.3
1,424,655	-				-1.0
1,424,655	-				+1.8
1,424,655	-				-0.3
1,424,655	-				+1.5
1,424,655	-				+0.3
1,424,655	-				-1.5
1,424,659	+				+0.4
1,424,659	+				-0.5
1,424,659	+				-1.6
1,424,659	+				+0.5
1,424,659	+				+0.4
1,424,659	+				-0.8
1,424,659	+				+0.3
1,424,659	+				+0.7
1,424,659	+				-1.3
1,424,660	-				+1.4
1,424,660	-				-0.8
1,424,660	-				-3.3
1,424,660	-				-1.3
1,424,660	-				-1.2
1,424,660	-				-3.2
1,424,745	-				+1.1
1,424,855	+				-1.3
1,424,855	+				-0.2
1,424,856	-		IAI47_06825	0.10	-0.0
1,424,856	-		IAI47_06825	0.10	+0.5
1,424,894	+		IAI47_06825	0.13	-2.5
1,424,909	+		IAI47_06825	0.14	-0.4
1,424,909	+		IAI47_06825	0.14	+1.9
1,424,909	+		IAI47_06825	0.14	-0.8
1,424,910	-		IAI47_06825	0.14	+1.1
1,424,910	-		IAI47_06825	0.14	-1.9
1,424,910	-		IAI47_06825	0.14	-0.3
1,424,930	+		IAI47_06825	0.16	-1.2
1,424,943	+		IAI47_06825	0.17	+0.7
1,424,943	+		IAI47_06825	0.17	-1.8
1,424,943	+		IAI47_06825	0.17	-2.1
1,424,943	+		IAI47_06825	0.17	-0.8
1,424,943	+		IAI47_06825	0.17	-0.2
1,424,943	+		IAI47_06825	0.17	-2.3
1,424,944	-		IAI47_06825	0.17	+0.8
1,424,944	-		IAI47_06825	0.17	-1.5
1,424,944	-		IAI47_06825	0.17	-1.0
1,424,944	-		IAI47_06825	0.17	+1.0
1,424,957	+		IAI47_06825	0.18	+0.3
1,424,957	+		IAI47_06825	0.18	+1.2
1,424,957	+		IAI47_06825	0.18	+0.3
1,424,957	+		IAI47_06825	0.18	+0.5
1,424,969	-		IAI47_06825	0.19	-3.1
1,424,969	-		IAI47_06825	0.19	+0.4
1,424,969	-		IAI47_06825	0.19	-0.9
1,424,969	-		IAI47_06825	0.19	+1.0
1,424,969	-		IAI47_06825	0.19	+1.3
1,424,984	+		IAI47_06825	0.20	-0.6
1,424,984	+		IAI47_06825	0.20	-2.0
1,424,984	+		IAI47_06825	0.20	+1.6
1,424,985	-		IAI47_06825	0.20	-0.5
1,424,986	+		IAI47_06825	0.20	-0.0
1,424,986	+		IAI47_06825	0.20	+0.1
1,424,986	+		IAI47_06825	0.20	+0.1
1,424,986	+		IAI47_06825	0.20	+0.6
1,424,987	-		IAI47_06825	0.20	+0.7
1,424,987	-		IAI47_06825	0.20	+0.6
1,424,987	-		IAI47_06825	0.20	+0.3
1,424,987	-		IAI47_06825	0.20	-1.8
1,424,987	-		IAI47_06825	0.20	-2.5
1,424,987	-		IAI47_06825	0.20	-0.6
1,424,987	-		IAI47_06825	0.20	+0.5
1,425,018	-		IAI47_06825	0.23	+0.5
1,425,018	-		IAI47_06825	0.23	-0.6
1,425,018	-		IAI47_06825	0.23	+1.0
1,425,039	+		IAI47_06825	0.24	+0.7
1,425,039	+		IAI47_06825	0.24	-0.9
1,425,039	+		IAI47_06825	0.24	-2.3
1,425,044	+		IAI47_06825	0.25	-0.5
1,425,045	-		IAI47_06825	0.25	-0.3
1,425,128	+		IAI47_06825	0.31	+0.5
1,425,183	+		IAI47_06825	0.36	-0.9
1,425,184	-		IAI47_06825	0.36	-2.5
1,425,221	+		IAI47_06825	0.38	-0.3
1,425,221	+		IAI47_06825	0.38	+0.7
1,425,221	+		IAI47_06825	0.38	-0.2
1,425,247	+		IAI47_06825	0.40	+0.7
1,425,247	+		IAI47_06825	0.40	-0.9
1,425,248	-		IAI47_06825	0.41	+0.8
1,425,283	+		IAI47_06825	0.43	-3.1
1,425,283	+		IAI47_06825	0.43	-0.2
1,425,283	+		IAI47_06825	0.43	+1.3
1,425,283	+		IAI47_06825	0.43	-0.0
1,425,283	+		IAI47_06825	0.43	+2.0
1,425,283	+		IAI47_06825	0.43	-0.5
1,425,283	+		IAI47_06825	0.43	-0.5
1,425,283	+		IAI47_06825	0.43	+1.5
1,425,283	+		IAI47_06825	0.43	+0.5
1,425,283	+		IAI47_06825	0.43	-1.5
1,425,283	+		IAI47_06825	0.43	+0.6
1,425,284	-		IAI47_06825	0.43	+0.9
1,425,284	-		IAI47_06825	0.43	+3.3
1,425,284	-		IAI47_06825	0.43	-2.7
1,425,284	-		IAI47_06825	0.43	-1.5
1,425,284	-		IAI47_06825	0.43	-0.5
1,425,284	-		IAI47_06825	0.43	-0.4
1,425,284	-		IAI47_06825	0.43	-1.4
1,425,284	-		IAI47_06825	0.43	+1.5
1,425,284	-		IAI47_06825	0.43	+0.0
1,425,289	+		IAI47_06825	0.44	+0.7
1,425,289	+		IAI47_06825	0.44	-0.1
1,425,289	+		IAI47_06825	0.44	-0.1
1,425,289	+		IAI47_06825	0.44	-0.2
1,425,289	+		IAI47_06825	0.44	-0.8
1,425,289	+		IAI47_06825	0.44	+2.0
1,425,289	+		IAI47_06825	0.44	-1.0
1,425,290	-		IAI47_06825	0.44	-0.7
1,425,320	+		IAI47_06825	0.46	+1.8
1,425,321	-		IAI47_06825	0.46	+1.5
1,425,337	+		IAI47_06825	0.48	+1.2
1,425,338	-		IAI47_06825	0.48	+0.5
1,425,338	-		IAI47_06825	0.48	-0.5
1,425,340	+		IAI47_06825	0.48	-0.2
1,425,340	+		IAI47_06825	0.48	-1.8
1,425,340	+		IAI47_06825	0.48	-1.3
1,425,341	-		IAI47_06825	0.48	+1.0
1,425,341	-		IAI47_06825	0.48	+2.1
1,425,456	-		IAI47_06825	0.57	+0.3
1,425,500	+		IAI47_06825	0.60	-0.0
1,425,500	+		IAI47_06825	0.60	-1.4
1,425,501	-		IAI47_06825	0.60	-1.8
1,425,535	+		IAI47_06825	0.63	+0.7
1,425,535	+		IAI47_06825	0.63	-0.0
1,425,536	-		IAI47_06825	0.63	+0.0
1,425,536	-		IAI47_06825	0.63	-0.0
1,425,603	+		IAI47_06825	0.68	-2.3
1,425,603	+		IAI47_06825	0.68	+0.5
1,425,603	+		IAI47_06825	0.68	+0.6
1,425,604	-		IAI47_06825	0.68	-1.6
1,425,604	-		IAI47_06825	0.68	-0.0
1,425,604	-		IAI47_06825	0.68	+0.6
1,425,696	+		IAI47_06825	0.75	-1.8
1,425,696	+		IAI47_06825	0.75	-1.0
1,425,696	+		IAI47_06825	0.75	-1.8
1,425,696	+		IAI47_06825	0.75	-0.0
1,425,696	+		IAI47_06825	0.75	+0.3
1,425,696	+		IAI47_06825	0.75	-0.5
1,425,696	+		IAI47_06825	0.75	+3.9
1,425,697	-		IAI47_06825	0.76	-2.2
1,425,833	+		IAI47_06825	0.86	+0.9
1,425,833	+		IAI47_06825	0.86	-0.0
1,425,834	-		IAI47_06825	0.86	-1.6
1,425,844	+		IAI47_06825	0.87	+0.4
1,425,845	-		IAI47_06825	0.87	+0.1
1,425,949	+				+0.2
1,425,949	+				+3.3
1,425,949	+				-1.0
1,425,961	+				-0.7
1,425,961	+				-0.4
1,425,962	-				+1.9
1,425,962	-				+0.6
1,426,010	+				+1.6
1,426,010	+				-1.3
1,426,010	+				-2.0
1,426,010	+				+0.4
1,426,010	+				+0.8
1,426,010	+				+0.7
1,426,010	+				-2.8
1,426,010	+				+0.2
1,426,011	-				-0.4
1,426,011	-				-1.6
1,426,011	-				-1.5
1,426,038	+				-0.7
1,426,039	-				+0.2
1,426,092	+				+1.4
1,426,179	+				+1.1
1,426,179	+				-1.6
1,426,179	+				-0.8
1,426,179	+				+0.9
1,426,180	-				-0.5
1,426,267	+		IAI47_06830	0.17	-1.5
1,426,268	-		IAI47_06830	0.18	-1.8
1,426,268	-		IAI47_06830	0.18	+0.4
1,426,306	+		IAI47_06830	0.21	+0.6
1,426,306	+		IAI47_06830	0.21	-1.4
1,426,307	-		IAI47_06830	0.21	+1.0
1,426,307	-		IAI47_06830	0.21	-0.2
1,426,307	-		IAI47_06830	0.21	-0.6
1,426,346	-		IAI47_06830	0.25	+2.0
1,426,465	+		IAI47_06830	0.37	-0.1
1,426,465	+		IAI47_06830	0.37	-1.5
1,426,549	+		IAI47_06830	0.45	-0.2
1,426,549	+		IAI47_06830	0.45	-0.6
1,426,550	-		IAI47_06830	0.45	+0.5
1,426,550	-		IAI47_06830	0.45	-2.0
1,426,551	+		IAI47_06830	0.45	-1.9
1,426,551	+		IAI47_06830	0.45	-1.7
1,426,552	-		IAI47_06830	0.46	-1.0
1,426,566	-		IAI47_06830	0.47	-0.2
1,426,602	+		IAI47_06830	0.51	-1.6
1,426,603	-		IAI47_06830	0.51	+1.1
1,426,603	-		IAI47_06830	0.51	+1.1
1,426,663	+		IAI47_06830	0.57	+0.5
1,426,664	-		IAI47_06830	0.57	-0.7
1,426,664	-		IAI47_06830	0.57	-0.8
1,426,825	-		IAI47_06830	0.73	-1.2
1,426,894	+		IAI47_06830	0.79	-2.5
1,426,894	+		IAI47_06830	0.79	-2.6
1,426,894	+		IAI47_06830	0.79	+1.1
1,426,895	-		IAI47_06830	0.80	-0.8
1,426,898	+		IAI47_06830	0.80	+0.8
1,426,899	-		IAI47_06830	0.80	+0.8
1,426,899	-		IAI47_06830	0.80	+0.3
1,426,945	-		IAI47_06830	0.84	-1.7
1,426,975	+		IAI47_06830	0.87	+0.9
1,426,975	+		IAI47_06830	0.87	-0.7
1,426,975	+		IAI47_06830	0.87	+0.1
1,426,975	+		IAI47_06830	0.87	+1.3
1,426,975	+		IAI47_06830	0.87	+1.1
1,426,975	+		IAI47_06830	0.87	+2.4
1,426,975	+		IAI47_06830	0.87	+0.3
1,426,975	+		IAI47_06830	0.87	-0.8
1,426,975	+		IAI47_06830	0.87	-1.1
1,426,976	-		IAI47_06830	0.88	+0.5
1,426,976	-		IAI47_06830	0.88	+0.9
1,426,976	-		IAI47_06830	0.88	-0.0
1,426,976	-		IAI47_06830	0.88	-1.5
1,426,976	-		IAI47_06830	0.88	-2.7
1,426,976	-		IAI47_06830	0.88	-1.6
1,426,976	-		IAI47_06830	0.88	-2.2
1,427,004	+				-1.0
1,427,005	-				+1.1