Strain Fitness in Pantoea sp. MT58 around IAI47_00530

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
120,080	-		IAI47_00525	0.44	-0.2
120,096	+		IAI47_00525	0.45	+2.6
120,096	+		IAI47_00525	0.45	+1.6
120,096	+		IAI47_00525	0.45	-0.8
120,096	+		IAI47_00525	0.45	+1.8
120,096	+		IAI47_00525	0.45	+0.2
120,097	-		IAI47_00525	0.45	-0.3
120,097	-		IAI47_00525	0.45	-2.1
120,097	-		IAI47_00525	0.45	-0.1
120,097	-		IAI47_00525	0.45	-0.3
120,097	-		IAI47_00525	0.45	+0.2
120,097	-		IAI47_00525	0.45	-1.3
120,097	-		IAI47_00525	0.45	+1.1
120,208	+		IAI47_00525	0.51	+3.3
120,208	+		IAI47_00525	0.51	+0.5
120,208	+		IAI47_00525	0.51	+0.8
120,208	+		IAI47_00525	0.51	-1.0
120,208	+		IAI47_00525	0.51	-0.2
120,208	+		IAI47_00525	0.51	-2.8
120,208	+		IAI47_00525	0.51	-0.3
120,208	+		IAI47_00525	0.51	+0.6
120,208	+		IAI47_00525	0.51	-0.0
120,208	+		IAI47_00525	0.51	-0.7
120,208	+		IAI47_00525	0.51	+2.9
120,208	+		IAI47_00525	0.51	+3.1
120,208	+		IAI47_00525	0.51	-2.0
120,208	+		IAI47_00525	0.51	+0.7
120,209	-		IAI47_00525	0.52	-0.4
120,209	-		IAI47_00525	0.52	+0.8
120,209	-		IAI47_00525	0.52	-0.5
120,209	-		IAI47_00525	0.52	+1.2
120,209	-		IAI47_00525	0.52	+1.1
120,209	-		IAI47_00525	0.52	-2.0
120,209	-		IAI47_00525	0.52	+1.1
120,209	-		IAI47_00525	0.52	-0.0
120,210	+		IAI47_00525	0.52	-0.3
120,210	+		IAI47_00525	0.52	-1.8
120,210	+		IAI47_00525	0.52	+0.8
120,210	+		IAI47_00525	0.52	+0.9
120,210	+		IAI47_00525	0.52	+1.0
120,210	+		IAI47_00525	0.52	+1.5
120,210	+		IAI47_00525	0.52	-0.2
120,211	-		IAI47_00525	0.52	+1.0
120,211	-		IAI47_00525	0.52	+0.3
120,211	-		IAI47_00525	0.52	+2.6
120,211	-		IAI47_00525	0.52	-0.3
120,211	-		IAI47_00525	0.52	-1.2
120,211	-		IAI47_00525	0.52	-0.7
120,230	+		IAI47_00525	0.53	+1.0
120,230	+		IAI47_00525	0.53	-0.8
120,230	+		IAI47_00525	0.53	+0.8
120,230	+		IAI47_00525	0.53	-1.1
120,231	-		IAI47_00525	0.53	-1.3
120,306	+		IAI47_00525	0.57	-1.0
120,307	-		IAI47_00525	0.57	-1.0
120,310	+		IAI47_00525	0.57	+0.8
120,310	+		IAI47_00525	0.57	+1.3
120,310	+		IAI47_00525	0.57	+0.9
120,311	-		IAI47_00525	0.57	+1.3
120,311	-		IAI47_00525	0.57	+0.1
120,311	-		IAI47_00525	0.57	-0.8
120,311	-		IAI47_00525	0.57	+1.7
120,311	-		IAI47_00525	0.57	+1.0
120,311	-		IAI47_00525	0.57	+0.3
120,337	+		IAI47_00525	0.59	+0.7
120,337	+		IAI47_00525	0.59	+0.8
120,338	-		IAI47_00525	0.59	+0.6
120,338	-		IAI47_00525	0.59	-0.1
120,338	-		IAI47_00525	0.59	+1.5
120,355	+		IAI47_00525	0.60	+1.8
120,356	-		IAI47_00525	0.60	-2.4
120,482	+		IAI47_00525	0.67	-0.4
120,482	+		IAI47_00525	0.67	+0.1
120,483	-		IAI47_00525	0.67	-0.7
120,510	-		IAI47_00525	0.69	-0.1
120,511	+		IAI47_00525	0.69	-3.3
120,511	+		IAI47_00525	0.69	-0.6
120,511	+		IAI47_00525	0.69	+0.9
120,512	-		IAI47_00525	0.69	-3.0
120,526	+		IAI47_00525	0.70	-1.0
120,527	+		IAI47_00525	0.70	+0.8
120,527	+		IAI47_00525	0.70	-1.2
120,527	+		IAI47_00525	0.70	+2.0
120,528	-		IAI47_00525	0.70	+0.8
120,528	-		IAI47_00525	0.70	+0.1
120,528	-		IAI47_00525	0.70	+1.8
120,528	-		IAI47_00525	0.70	+0.4
120,529	+		IAI47_00525	0.70	+0.0
120,529	+		IAI47_00525	0.70	-1.0
120,529	+		IAI47_00525	0.70	-1.5
120,529	+		IAI47_00525	0.70	-2.7
120,530	-		IAI47_00525	0.70	+1.4
120,530	-		IAI47_00525	0.70	-0.8
120,530	-		IAI47_00525	0.70	-2.8
120,530	-		IAI47_00525	0.70	+0.4
120,530	-		IAI47_00525	0.70	-1.2
120,530	-		IAI47_00525	0.70	+1.8
120,530	-		IAI47_00525	0.70	+2.0
120,530	-		IAI47_00525	0.70	-1.9
120,530	-		IAI47_00525	0.70	-0.9
120,558	+		IAI47_00525	0.71	-2.9
120,559	-		IAI47_00525	0.72	-2.8
120,559	-		IAI47_00525	0.72	+1.0
120,570	+		IAI47_00525	0.72	-0.7
120,601	+		IAI47_00525	0.74	-1.8
120,601	+		IAI47_00525	0.74	+0.8
120,636	+		IAI47_00525	0.76	-0.4
120,637	-		IAI47_00525	0.76	+0.1
120,652	+		IAI47_00525	0.77	-1.3
120,653	-		IAI47_00525	0.77	+0.2
120,653	-		IAI47_00525	0.77	-0.4
120,653	-		IAI47_00525	0.77	+2.6
120,653	-		IAI47_00525	0.77	-0.8
120,653	-		IAI47_00525	0.77	+3.7
120,653	-		IAI47_00525	0.77	-1.1
120,682	-		IAI47_00525	0.79	-1.0
120,751	+		IAI47_00525	0.82	+0.4
120,752	-		IAI47_00525	0.83	-2.8
120,855	+		IAI47_00525	0.88	-1.1
120,855	+		IAI47_00525	0.88	+0.0
120,855	+		IAI47_00525	0.88	-2.4
120,855	+		IAI47_00525	0.88	-1.4
120,856	-		IAI47_00525	0.88	-2.5
120,856	-		IAI47_00525	0.88	-2.8
120,856	-		IAI47_00525	0.88	+3.5
120,856	-		IAI47_00525	0.88	+0.6
120,856	-		IAI47_00525	0.88	-2.6
120,871	+		IAI47_00525	0.89	+0.5
120,871	+		IAI47_00525	0.89	-3.1
120,871	+		IAI47_00525	0.89	+1.5
120,872	-		IAI47_00525	0.89	-0.3
120,872	-		IAI47_00525	0.89	-0.8
120,872	-		IAI47_00525	0.89	-0.7
120,982	+				+1.0
120,983	-				+0.7
120,983	-				+2.6
120,983	-				-2.4
120,983	-				-1.1
121,014	+				-0.6
121,014	+				-0.1
121,015	-				-0.8
121,084	+		IAI47_00530	0.14	+0.4
121,084	+		IAI47_00530	0.14	-0.0
121,085	-		IAI47_00530	0.15	-2.8
121,090	+		IAI47_00530	0.15	+0.7
121,090	+		IAI47_00530	0.15	+2.4
121,090	+		IAI47_00530	0.15	-2.3
121,090	+		IAI47_00530	0.15	+0.3
121,090	+		IAI47_00530	0.15	+0.4
121,090	+		IAI47_00530	0.15	+1.3
121,091	-		IAI47_00530	0.16	-3.0
121,091	-		IAI47_00530	0.16	-0.7
121,091	-		IAI47_00530	0.16	-0.8
121,132	+		IAI47_00530	0.22	+0.4
121,132	+		IAI47_00530	0.22	-2.5
121,133	-		IAI47_00530	0.22	-1.2
121,133	-		IAI47_00530	0.22	-0.8
121,133	-		IAI47_00530	0.22	-0.6
121,134	+		IAI47_00530	0.22	+0.3
121,134	+		IAI47_00530	0.22	+1.9
121,134	+		IAI47_00530	0.22	-0.7
121,134	+		IAI47_00530	0.22	+0.4
121,134	+		IAI47_00530	0.22	-0.1
121,134	+		IAI47_00530	0.22	-0.2
121,134	+		IAI47_00530	0.22	-0.6
121,134	+		IAI47_00530	0.22	+0.8
121,134	+		IAI47_00530	0.22	+1.2
121,134	+		IAI47_00530	0.22	+3.1
121,134	+		IAI47_00530	0.22	+0.5
121,134	+		IAI47_00530	0.22	+0.5
121,134	+		IAI47_00530	0.22	-0.2
121,134	+		IAI47_00530	0.22	-0.1
121,135	-		IAI47_00530	0.23	+0.5
121,135	-		IAI47_00530	0.23	+1.2
121,135	-		IAI47_00530	0.23	+0.5
121,135	-		IAI47_00530	0.23	-1.3
121,135	-		IAI47_00530	0.23	+0.2
121,135	-		IAI47_00530	0.23	-0.0
121,135	-		IAI47_00530	0.23	-1.9
121,135	-		IAI47_00530	0.23	-0.4
121,135	-		IAI47_00530	0.23	+0.6
121,135	-		IAI47_00530	0.23	+1.5
121,135	-		IAI47_00530	0.23	-1.2
121,135	-		IAI47_00530	0.23	+3.9
121,135	-		IAI47_00530	0.23	+1.8
121,135	-		IAI47_00530	0.23	-4.1
121,167	+		IAI47_00530	0.28	+1.0
121,168	-		IAI47_00530	0.28	+2.0
121,201	+		IAI47_00530	0.33	-0.2
121,202	-		IAI47_00530	0.33	-0.2
121,220	+		IAI47_00530	0.36	-0.7
121,221	-		IAI47_00530	0.37	+1.1
121,221	-		IAI47_00530	0.37	-2.4
121,221	-		IAI47_00530	0.37	-2.3
121,221	-		IAI47_00530	0.37	-1.4
121,240	+		IAI47_00530	0.40	-1.6
121,240	+		IAI47_00530	0.40	+4.7
121,241	-		IAI47_00530	0.40	-1.1
121,241	-		IAI47_00530	0.40	+0.5
121,253	+		IAI47_00530	0.42	+0.2
121,264	+		IAI47_00530	0.44	-1.3
121,264	+		IAI47_00530	0.44	-0.5
121,264	+		IAI47_00530	0.44	-1.5
121,265	-		IAI47_00530	0.44	+0.3
121,306	+		IAI47_00530	0.50	-0.2
121,422	+		IAI47_00530	0.69	+2.1
121,422	+		IAI47_00530	0.69	+1.1
121,422	+		IAI47_00530	0.69	+0.2
121,422	+		IAI47_00530	0.69	+0.1
121,422	+		IAI47_00530	0.69	-0.9
121,423	-		IAI47_00530	0.69	+1.5
121,423	-		IAI47_00530	0.69	-2.0
121,423	-		IAI47_00530	0.69	-0.3
121,423	-		IAI47_00530	0.69	+0.6
121,423	-		IAI47_00530	0.69	-1.9
121,423	-		IAI47_00530	0.69	+0.7
121,423	-		IAI47_00530	0.69	-0.9
121,423	-		IAI47_00530	0.69	+0.8
121,423	-		IAI47_00530	0.69	+0.5
121,423	-		IAI47_00530	0.69	-0.7
121,510	+		IAI47_00530	0.83	+1.3
121,510	+		IAI47_00530	0.83	-1.9
121,510	+		IAI47_00530	0.83	-1.8
121,510	+		IAI47_00530	0.83	+0.9
121,510	+		IAI47_00530	0.83	-0.3
121,510	+		IAI47_00530	0.83	-0.8
121,511	-		IAI47_00530	0.83	+1.0
121,511	-		IAI47_00530	0.83	-3.2
121,511	-		IAI47_00530	0.83	+2.7
121,511	-		IAI47_00530	0.83	+2.0
121,513	+		IAI47_00530	0.84	-0.4
121,513	+		IAI47_00530	0.84	+1.0
121,513	+		IAI47_00530	0.84	+0.2
121,513	+		IAI47_00530	0.84	+0.2
121,513	+		IAI47_00530	0.84	-1.1
121,513	+		IAI47_00530	0.84	-0.3
121,514	-		IAI47_00530	0.84	+2.1
121,514	-		IAI47_00530	0.84	-0.6
121,579	+				+0.0
121,580	-				-0.3
121,580	-				+0.2
121,583	-				-2.3
121,588	+				-1.1
121,588	+				+4.7
121,589	-				-1.4
121,593	+				-1.6
121,593	+				+1.1
121,593	+				+0.2
121,594	-				+0.1
121,594	-				+1.9
121,608	-				+0.8
121,608	-				+2.6
121,608	-				-3.6
121,608	-				+0.2
121,608	-				-0.2
121,612	+				+0.4
121,613	-				+1.1
121,613	-				+0.0
121,613	-				-1.8
121,613	-				-2.9
121,626	-				-1.2
121,626	-				-2.0
121,642	+				-1.0
121,642	+				+0.7
121,642	+				-2.5
121,642	+				-0.7
121,643	-				+0.7
121,643	-				+1.3
121,643	-				+1.2
121,643	-				+0.8
121,654	+				+0.7
121,655	-				-0.8
121,655	-				-0.9
121,707	+				+0.9
121,707	+				-1.8
121,707	+				+0.6
121,707	+				-3.6
121,707	+				+0.8
121,707	+				-0.2
121,708	-				+1.4
121,708	-				+0.5
121,708	-				+1.1
121,708	-				+0.3
121,708	-				-0.5
121,708	-				-0.1
121,708	-				-0.5
121,708	-				-1.9
121,708	-				-0.6
121,708	-				-1.3
121,708	-				+0.8
121,709	+				-0.5
121,709	+				-1.6
121,710	-				-0.8
121,710	-				+3.1
121,733	+				+0.7
121,733	+				+0.6
121,733	+				-0.2
121,733	+				-1.6
121,734	-				+0.9
121,734	-				-0.5
121,734	-				+1.6
121,781	-				+0.1
121,826	+				-2.2
121,826	+				-0.5
121,853	+				+0.5
121,853	+				+0.4
121,853	+				+0.8
121,853	+				+2.0
121,853	+				+0.9
121,907	+				-0.2
121,908	-				+0.7
121,930	+				+0.3
121,931	-				+1.3
121,931	-				+2.4
121,948	+				-0.5
121,949	-				-1.8
121,950	+				-2.3
121,951	-				-0.6
121,963	-				-1.6
121,987	-				-0.3
122,031	-				+0.1
122,038	+				-1.3
122,038	+				-0.4
122,044	-				+0.1
122,047	-				-0.6
122,087	-				-0.1
122,095	-				+1.6
122,121	+		IAI47_00535	0.12	-0.8
122,121	+		IAI47_00535	0.12	-2.5
122,121	+		IAI47_00535	0.12	+1.0
122,122	-		IAI47_00535	0.12	+1.0
122,122	-		IAI47_00535	0.12	-0.4
122,122	-		IAI47_00535	0.12	+0.4
122,122	-		IAI47_00535	0.12	+0.9
122,122	-		IAI47_00535	0.12	-1.2
122,124	+		IAI47_00535	0.12	+1.1
122,125	-		IAI47_00535	0.12	-2.1
122,125	-		IAI47_00535	0.12	+0.1
122,130	+		IAI47_00535	0.13	+1.0
122,130	+		IAI47_00535	0.13	+1.0
122,130	+		IAI47_00535	0.13	+0.6
122,130	+		IAI47_00535	0.13	+0.3
122,180	+		IAI47_00535	0.21	+1.1
122,180	+		IAI47_00535	0.21	-1.0
122,181	-		IAI47_00535	0.21	-2.2
122,183	+		IAI47_00535	0.21	+0.2
122,184	-		IAI47_00535	0.22	+0.7
122,206	+		IAI47_00535	0.25	+1.0
122,207	-		IAI47_00535	0.25	-1.0
122,211	-		IAI47_00535	0.26	+0.4
122,234	+		IAI47_00535	0.29	-1.8
122,235	-		IAI47_00535	0.29	+2.1
122,266	+		IAI47_00535	0.34	-3.8
122,266	+		IAI47_00535	0.34	+0.6
122,266	+		IAI47_00535	0.34	-4.2
122,266	+		IAI47_00535	0.34	-1.3
122,267	-		IAI47_00535	0.34	-1.3
122,267	-		IAI47_00535	0.34	-0.4
122,267	-		IAI47_00535	0.34	-0.5
122,268	+		IAI47_00535	0.35	+1.4
122,269	-		IAI47_00535	0.35	-0.7
122,286	-		IAI47_00535	0.37	+2.3
122,288	+		IAI47_00535	0.38	+0.5
122,299	-		IAI47_00535	0.39	+1.0
122,299	-		IAI47_00535	0.39	-1.8
122,320	+		IAI47_00535	0.43	-1.8
122,321	-		IAI47_00535	0.43	-1.2
122,323	+		IAI47_00535	0.43	+1.7
122,323	+		IAI47_00535	0.43	+1.2
122,323	+		IAI47_00535	0.43	-0.2
122,324	-		IAI47_00535	0.43	-1.0
122,324	-		IAI47_00535	0.43	+0.9
122,437	+		IAI47_00535	0.61	-0.2
122,437	+		IAI47_00535	0.61	+0.4
122,437	+		IAI47_00535	0.61	-0.1
122,438	-		IAI47_00535	0.61	+0.3
122,438	-		IAI47_00535	0.61	+0.8
122,440	+		IAI47_00535	0.61	-1.4
122,448	+		IAI47_00535	0.62	+2.2
122,449	-		IAI47_00535	0.63	+0.4
122,467	+		IAI47_00535	0.65	+1.1
122,468	-		IAI47_00535	0.66	+2.0
122,479	+		IAI47_00535	0.67	-2.3
122,480	-		IAI47_00535	0.67	-0.1
122,480	-		IAI47_00535	0.67	+0.5
122,480	-		IAI47_00535	0.67	+1.7
122,480	-		IAI47_00535	0.67	+1.1
122,497	+		IAI47_00535	0.70	+0.2
122,497	+		IAI47_00535	0.70	+0.4
122,525	-		IAI47_00535	0.74	+1.0
122,525	-		IAI47_00535	0.74	-0.8
122,525	-		IAI47_00535	0.74	+1.1
122,525	-		IAI47_00535	0.74	+1.5
122,525	-		IAI47_00535	0.74	+1.4
122,537	+		IAI47_00535	0.76	+1.9
122,537	+		IAI47_00535	0.76	+2.8
122,537	+		IAI47_00535	0.76	+1.0
122,546	+		IAI47_00535	0.78	-0.7
122,547	-		IAI47_00535	0.78	-2.3
122,547	-		IAI47_00535	0.78	-2.0
122,548	+		IAI47_00535	0.78	-2.5
122,567	-		IAI47_00535	0.81	+0.7