Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2468 and Ga0059261_2469 are separated by 4 nucleotides Ga0059261_2469 and Ga0059261_2470 are separated by 83 nucleotides Ga0059261_2470 and Ga0059261_2471 are separated by 147 nucleotides Ga0059261_2471 and Ga0059261_2472 are separated by 63 nucleotides
Ga0059261_2468: Ga0059261_2468 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 2,551,656 to 2,552,459
_2468
Ga0059261_2469: Ga0059261_2469 - Predicted acetyltransferase, at 2,552,464 to 2,552,991
_2469
Ga0059261_2470: Ga0059261_2470 - chorismate synthase (EC 4.2.3.5), at 2,553,075 to 2,554,145
_2470
Ga0059261_2471: Ga0059261_2471 - hypothetical protein, at 2,554,293 to 2,554,532
_2471
Ga0059261_2472: Ga0059261_2472 - Adenylosuccinate synthetase (EC 6.3.4.4), at 2,554,596 to 2,555,885
_2472
Position (kb)
2553
2554
2555 Strain fitness (log2 ratio)
-2
-1
0
1 at 2552.725 kb on + strand, within Ga0059261_2469 at 2552.725 kb on + strand, within Ga0059261_2469 at 2552.726 kb on - strand, within Ga0059261_2469 at 2552.791 kb on + strand, within Ga0059261_2469 at 2552.791 kb on + strand, within Ga0059261_2469 at 2552.792 kb on - strand, within Ga0059261_2469 at 2552.824 kb on + strand, within Ga0059261_2469 at 2552.824 kb on + strand, within Ga0059261_2469 at 2552.824 kb on + strand, within Ga0059261_2469 at 2552.825 kb on - strand, within Ga0059261_2469 at 2552.825 kb on - strand, within Ga0059261_2469 at 2552.825 kb on - strand, within Ga0059261_2469 at 2552.825 kb on - strand, within Ga0059261_2469 at 2552.842 kb on + strand, within Ga0059261_2469 at 2552.879 kb on - strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2552.890 kb on + strand, within Ga0059261_2469 at 2553.007 kb on + strand at 2553.007 kb on + strand at 2553.008 kb on - strand at 2554.277 kb on + strand at 2554.277 kb on + strand at 2554.278 kb on - strand at 2554.278 kb on - strand at 2554.278 kb on - strand at 2554.278 kb on - strand at 2554.278 kb on - strand at 2554.287 kb on + strand at 2554.287 kb on + strand at 2554.287 kb on + strand at 2554.287 kb on + strand at 2554.321 kb on + strand, within Ga0059261_2471 at 2554.355 kb on + strand, within Ga0059261_2471 at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.527 kb on + strand at 2554.528 kb on - strand at 2554.528 kb on - strand at 2554.528 kb on - strand at 2554.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,552,725 + Ga0059261_2469 0.49 -0.9 2,552,725 + Ga0059261_2469 0.49 +0.4 2,552,726 - Ga0059261_2469 0.50 -0.1 2,552,791 + Ga0059261_2469 0.62 -0.6 2,552,791 + Ga0059261_2469 0.62 -0.5 2,552,792 - Ga0059261_2469 0.62 +0.3 2,552,824 + Ga0059261_2469 0.68 -0.1 2,552,824 + Ga0059261_2469 0.68 +1.0 2,552,824 + Ga0059261_2469 0.68 -0.9 2,552,825 - Ga0059261_2469 0.68 +0.6 2,552,825 - Ga0059261_2469 0.68 +0.5 2,552,825 - Ga0059261_2469 0.68 +0.1 2,552,825 - Ga0059261_2469 0.68 +0.7 2,552,842 + Ga0059261_2469 0.72 -0.2 2,552,879 - Ga0059261_2469 0.79 -0.3 2,552,890 + Ga0059261_2469 0.81 -0.9 2,552,890 + Ga0059261_2469 0.81 -1.5 2,552,890 + Ga0059261_2469 0.81 +0.2 2,552,890 + Ga0059261_2469 0.81 +0.6 2,552,890 + Ga0059261_2469 0.81 -0.8 2,552,890 + Ga0059261_2469 0.81 -0.7 2,553,007 + -0.0 2,553,007 + -0.9 2,553,008 - +0.1 2,554,277 + -0.2 2,554,277 + -0.5 2,554,278 - +0.3 2,554,278 - -0.2 2,554,278 - -0.9 2,554,278 - +0.3 2,554,278 - -0.6 2,554,287 + -0.5 2,554,287 + -0.7 2,554,287 + -0.4 2,554,287 + +0.6 2,554,321 + Ga0059261_2471 0.12 -1.8 2,554,355 + Ga0059261_2471 0.26 -0.9 2,554,527 + +0.1 2,554,527 + +0.3 2,554,527 + -0.5 2,554,527 + -0.0 2,554,527 + -0.2 2,554,527 + -0.6 2,554,527 + +0.5 2,554,527 + +0.2 2,554,528 - -0.1 2,554,528 - -2.6 2,554,528 - -0.5 2,554,528 - -0.0
Or see this region's nucleotide sequence