Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2123

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2121 and Ga0059261_2122 are separated by 97 nucleotidesGa0059261_2122 and Ga0059261_2123 are separated by 213 nucleotidesGa0059261_2123 and Ga0059261_2124 are separated by 39 nucleotidesGa0059261_2124 and Ga0059261_2125 are separated by 90 nucleotides Ga0059261_2121: Ga0059261_2121 - hypothetical protein, at 2,234,368 to 2,236,869 _2121 Ga0059261_2122: Ga0059261_2122 - chorismate mutase (EC 5.4.99.5), at 2,236,967 to 2,237,260 _2122 Ga0059261_2123: Ga0059261_2123 - Geranylgeranyl pyrophosphate synthase, at 2,237,474 to 2,238,487 _2123 Ga0059261_2124: Ga0059261_2124 - hypothetical protein, at 2,238,527 to 2,238,739 _2124 Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286 _2125 Position (kb) 2237 2238 2239Strain fitness (log2 ratio) -1 0 1 2at 2236.598 kb on + strand, within Ga0059261_2121at 2236.598 kb on + strand, within Ga0059261_2121at 2236.598 kb on + strand, within Ga0059261_2121at 2236.624 kb on + strandat 2236.624 kb on + strandat 2236.853 kb on + strandat 2236.915 kb on + strandat 2236.915 kb on + strandat 2236.916 kb on - strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.937 kb on + strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2236.938 kb on - strandat 2237.265 kb on + strandat 2237.266 kb on - strandat 2237.266 kb on - strandat 2237.266 kb on - strandat 2237.337 kb on + strandat 2237.337 kb on + strandat 2237.338 kb on - strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.342 kb on + strandat 2237.343 kb on - strandat 2237.343 kb on - strandat 2237.343 kb on - strandat 2237.412 kb on + strandat 2237.413 kb on - strandat 2237.413 kb on - strandat 2237.413 kb on - strandat 2237.418 kb on + strandat 2237.419 kb on - strandat 2237.419 kb on - strandat 2237.419 kb on - strandat 2237.419 kb on - strandat 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.529 kb on - strandat 2238.529 kb on - strandat 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.618 kb on - strand, within Ga0059261_2124at 2238.618 kb on - strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.687 kb on + strand, within Ga0059261_2124at 2238.687 kb on + strand, within Ga0059261_2124at 2238.688 kb on - strand, within Ga0059261_2124at 2238.688 kb on - strand, within Ga0059261_2124at 2238.818 kb on + strandat 2238.819 kb on - strandat 2238.819 kb on - strandat 2238.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,236,598 + Ga0059261_2121 0.89 +0.8
2,236,598 + Ga0059261_2121 0.89 +0.5
2,236,598 + Ga0059261_2121 0.89 -1.5
2,236,624 + -0.4
2,236,624 + +0.3
2,236,853 + -1.1
2,236,915 + -0.3
2,236,915 + +0.4
2,236,916 - +1.0
2,236,937 + -0.4
2,236,937 + -0.2
2,236,937 + +0.7
2,236,937 + +1.2
2,236,937 + +0.7
2,236,937 + -1.0
2,236,937 + +0.2
2,236,937 + +1.5
2,236,938 - -0.2
2,236,938 - +0.6
2,236,938 - +1.9
2,236,938 - +0.3
2,236,938 - -0.2
2,236,938 - +1.0
2,236,938 - +1.3
2,236,938 - -0.8
2,237,265 + +0.4
2,237,266 - +0.6
2,237,266 - +0.8
2,237,266 - +0.0
2,237,337 + +0.2
2,237,337 + -0.1
2,237,338 - +1.7
2,237,342 + +0.0
2,237,342 + +0.6
2,237,342 + +0.6
2,237,342 + +0.7
2,237,342 + -0.8
2,237,342 + +1.4
2,237,342 + +0.0
2,237,342 + +1.2
2,237,342 + -0.6
2,237,343 - -0.1
2,237,343 - +0.2
2,237,343 - +0.7
2,237,412 + +0.2
2,237,413 - -0.4
2,237,413 - +0.7
2,237,413 - +0.3
2,237,418 + +0.3
2,237,419 - -1.1
2,237,419 - -0.4
2,237,419 - -0.4
2,237,419 - +1.4
2,238,528 + +0.5
2,238,528 + +0.5
2,238,528 + +1.3
2,238,528 + +0.6
2,238,529 - +1.8
2,238,529 - +0.4
2,238,617 + Ga0059261_2124 0.42 +0.9
2,238,617 + Ga0059261_2124 0.42 +0.1
2,238,617 + Ga0059261_2124 0.42 +2.2
2,238,617 + Ga0059261_2124 0.42 +0.6
2,238,617 + Ga0059261_2124 0.42 +0.7
2,238,617 + Ga0059261_2124 0.42 +1.6
2,238,618 - Ga0059261_2124 0.43 +0.4
2,238,618 - Ga0059261_2124 0.43 +2.2
2,238,633 + Ga0059261_2124 0.50 +0.2
2,238,633 + Ga0059261_2124 0.50 +0.1
2,238,633 + Ga0059261_2124 0.50 +1.2
2,238,633 + Ga0059261_2124 0.50 +0.6
2,238,633 + Ga0059261_2124 0.50 +0.2
2,238,633 + Ga0059261_2124 0.50 +0.1
2,238,633 + Ga0059261_2124 0.50 -0.7
2,238,633 + Ga0059261_2124 0.50 +0.3
2,238,634 - Ga0059261_2124 0.50 +1.3
2,238,634 - Ga0059261_2124 0.50 +1.0
2,238,634 - Ga0059261_2124 0.50 +0.5
2,238,634 - Ga0059261_2124 0.50 +0.2
2,238,634 - Ga0059261_2124 0.50 +0.7
2,238,634 - Ga0059261_2124 0.50 -0.4
2,238,687 + Ga0059261_2124 0.75 +1.0
2,238,687 + Ga0059261_2124 0.75 +0.2
2,238,688 - Ga0059261_2124 0.76 +0.6
2,238,688 - Ga0059261_2124 0.76 +1.2
2,238,818 + -0.6
2,238,819 - +0.5
2,238,819 - +1.3
2,238,901 - +0.5

Or see this region's nucleotide sequence