Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2121 and Ga0059261_2122 are separated by 97 nucleotides Ga0059261_2122 and Ga0059261_2123 are separated by 213 nucleotides Ga0059261_2123 and Ga0059261_2124 are separated by 39 nucleotides Ga0059261_2124 and Ga0059261_2125 are separated by 90 nucleotides
Ga0059261_2121: Ga0059261_2121 - hypothetical protein, at 2,234,368 to 2,236,869
_2121
Ga0059261_2122: Ga0059261_2122 - chorismate mutase (EC 5.4.99.5), at 2,236,967 to 2,237,260
_2122
Ga0059261_2123: Ga0059261_2123 - Geranylgeranyl pyrophosphate synthase, at 2,237,474 to 2,238,487
_2123
Ga0059261_2124: Ga0059261_2124 - hypothetical protein, at 2,238,527 to 2,238,739
_2124
Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286
_2125
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-1
0
1
2 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.624 kb on + strand at 2236.624 kb on + strand at 2236.853 kb on + strand at 2236.915 kb on + strand at 2236.915 kb on + strand at 2236.916 kb on - strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2237.265 kb on + strand at 2237.266 kb on - strand at 2237.266 kb on - strand at 2237.266 kb on - strand at 2237.337 kb on + strand at 2237.337 kb on + strand at 2237.338 kb on - strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.343 kb on - strand at 2237.343 kb on - strand at 2237.343 kb on - strand at 2237.412 kb on + strand at 2237.413 kb on - strand at 2237.413 kb on - strand at 2237.413 kb on - strand at 2237.418 kb on + strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.529 kb on - strand at 2238.529 kb on - strand at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.818 kb on + strand at 2238.819 kb on - strand at 2238.819 kb on - strand at 2238.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,236,598 + Ga0059261_2121 0.89 +0.8 2,236,598 + Ga0059261_2121 0.89 +0.5 2,236,598 + Ga0059261_2121 0.89 -1.5 2,236,624 + -0.4 2,236,624 + +0.3 2,236,853 + -1.1 2,236,915 + -0.3 2,236,915 + +0.4 2,236,916 - +1.0 2,236,937 + -0.4 2,236,937 + -0.2 2,236,937 + +0.7 2,236,937 + +1.2 2,236,937 + +0.7 2,236,937 + -1.0 2,236,937 + +0.2 2,236,937 + +1.5 2,236,938 - -0.2 2,236,938 - +0.6 2,236,938 - +1.9 2,236,938 - +0.3 2,236,938 - -0.2 2,236,938 - +1.0 2,236,938 - +1.3 2,236,938 - -0.8 2,237,265 + +0.4 2,237,266 - +0.6 2,237,266 - +0.8 2,237,266 - +0.0 2,237,337 + +0.2 2,237,337 + -0.1 2,237,338 - +1.7 2,237,342 + +0.0 2,237,342 + +0.6 2,237,342 + +0.6 2,237,342 + +0.7 2,237,342 + -0.8 2,237,342 + +1.4 2,237,342 + +0.0 2,237,342 + +1.2 2,237,342 + -0.6 2,237,343 - -0.1 2,237,343 - +0.2 2,237,343 - +0.7 2,237,412 + +0.2 2,237,413 - -0.4 2,237,413 - +0.7 2,237,413 - +0.3 2,237,418 + +0.3 2,237,419 - -1.1 2,237,419 - -0.4 2,237,419 - -0.4 2,237,419 - +1.4 2,238,528 + +0.5 2,238,528 + +0.5 2,238,528 + +1.3 2,238,528 + +0.6 2,238,529 - +1.8 2,238,529 - +0.4 2,238,617 + Ga0059261_2124 0.42 +0.9 2,238,617 + Ga0059261_2124 0.42 +0.1 2,238,617 + Ga0059261_2124 0.42 +2.2 2,238,617 + Ga0059261_2124 0.42 +0.6 2,238,617 + Ga0059261_2124 0.42 +0.7 2,238,617 + Ga0059261_2124 0.42 +1.6 2,238,618 - Ga0059261_2124 0.43 +0.4 2,238,618 - Ga0059261_2124 0.43 +2.2 2,238,633 + Ga0059261_2124 0.50 +0.2 2,238,633 + Ga0059261_2124 0.50 +0.1 2,238,633 + Ga0059261_2124 0.50 +1.2 2,238,633 + Ga0059261_2124 0.50 +0.6 2,238,633 + Ga0059261_2124 0.50 +0.2 2,238,633 + Ga0059261_2124 0.50 +0.1 2,238,633 + Ga0059261_2124 0.50 -0.7 2,238,633 + Ga0059261_2124 0.50 +0.3 2,238,634 - Ga0059261_2124 0.50 +1.3 2,238,634 - Ga0059261_2124 0.50 +1.0 2,238,634 - Ga0059261_2124 0.50 +0.5 2,238,634 - Ga0059261_2124 0.50 +0.2 2,238,634 - Ga0059261_2124 0.50 +0.7 2,238,634 - Ga0059261_2124 0.50 -0.4 2,238,687 + Ga0059261_2124 0.75 +1.0 2,238,687 + Ga0059261_2124 0.75 +0.2 2,238,688 - Ga0059261_2124 0.76 +0.6 2,238,688 - Ga0059261_2124 0.76 +1.2 2,238,818 + -0.6 2,238,819 - +0.5 2,238,819 - +1.3 2,238,901 - +0.5
Or see this region's nucleotide sequence