Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27320

Experiment: Growth at 34C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS27315 and PFLU_RS27320 are separated by 136 nucleotidesPFLU_RS27320 and PFLU_RS27325 are separated by 24 nucleotides PFLU_RS27315: PFLU_RS27315 - N-acetyl-gamma-glutamyl-phosphate reductase, at 6,078,783 to 6,079,817 _RS27315 PFLU_RS27320: PFLU_RS27320 - protoporphyrinogen oxidase HemJ, at 6,079,954 to 6,080,382 _RS27320 PFLU_RS27325: PFLU_RS27325 - nitronate monooxygenase, at 6,080,407 to 6,081,369 _RS27325 Position (kb) 6079 6080 6081Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6079.858 kb on + strandat 6079.859 kb on - strandat 6079.859 kb on - strandat 6079.897 kb on + strandat 6079.897 kb on + strandat 6079.897 kb on + strandat 6079.897 kb on + strandat 6079.897 kb on + strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.898 kb on - strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.915 kb on + strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.916 kb on - strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.918 kb on + strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.919 kb on - strandat 6079.929 kb on - strandat 6079.929 kb on - strandat 6079.945 kb on + strandat 6079.945 kb on + strandat 6079.949 kb on + strandat 6079.949 kb on + strandat 6079.949 kb on + strandat 6079.949 kb on + strandat 6079.949 kb on + strandat 6080.380 kb on + strandat 6080.380 kb on + strandat 6080.381 kb on - strandat 6080.381 kb on - strandat 6080.381 kb on - strandat 6080.472 kb on + strandat 6080.472 kb on + strandat 6080.472 kb on + strandat 6080.472 kb on + strandat 6080.472 kb on + strandat 6080.473 kb on - strandat 6080.473 kb on - strandat 6080.473 kb on - strandat 6080.473 kb on - strandat 6080.473 kb on - strandat 6080.538 kb on + strand, within PFLU_RS27325at 6080.620 kb on + strand, within PFLU_RS27325at 6080.709 kb on + strand, within PFLU_RS27325at 6080.755 kb on + strand, within PFLU_RS27325at 6080.755 kb on + strand, within PFLU_RS27325at 6080.755 kb on + strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.756 kb on - strand, within PFLU_RS27325at 6080.995 kb on + strand, within PFLU_RS27325at 6080.995 kb on + strand, within PFLU_RS27325at 6080.995 kb on + strand, within PFLU_RS27325at 6080.995 kb on + strand, within PFLU_RS27325at 6080.996 kb on - strand, within PFLU_RS27325at 6080.996 kb on - strand, within PFLU_RS27325at 6080.996 kb on - strand, within PFLU_RS27325at 6080.996 kb on - strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.046 kb on + strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.047 kb on - strand, within PFLU_RS27325at 6081.048 kb on + strand, within PFLU_RS27325at 6081.048 kb on + strand, within PFLU_RS27325at 6081.048 kb on + strand, within PFLU_RS27325at 6081.048 kb on + strand, within PFLU_RS27325at 6081.048 kb on + strand, within PFLU_RS27325at 6081.049 kb on - strand, within PFLU_RS27325at 6081.049 kb on - strand, within PFLU_RS27325at 6081.049 kb on - strand, within PFLU_RS27325at 6081.049 kb on - strand, within PFLU_RS27325at 6081.049 kb on - strand, within PFLU_RS27325at 6081.123 kb on + strand, within PFLU_RS27325at 6081.123 kb on + strand, within PFLU_RS27325at 6081.123 kb on + strand, within PFLU_RS27325at 6081.123 kb on + strand, within PFLU_RS27325at 6081.123 kb on + strand, within PFLU_RS27325at 6081.124 kb on - strand, within PFLU_RS27325at 6081.124 kb on - strand, within PFLU_RS27325at 6081.124 kb on - strand, within PFLU_RS27325at 6081.124 kb on - strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.242 kb on + strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325at 6081.243 kb on - strand, within PFLU_RS27325

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C; with MOPS
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6,079,858 + -0.3
6,079,859 - -0.9
6,079,859 - +0.9
6,079,897 + +0.2
6,079,897 + +0.3
6,079,897 + +1.0
6,079,897 + +1.1
6,079,897 + -0.7
6,079,898 - +0.2
6,079,898 - +0.2
6,079,898 - -2.1
6,079,898 - +2.9
6,079,898 - -1.5
6,079,898 - +0.9
6,079,898 - +0.0
6,079,898 - +0.4
6,079,915 + -0.7
6,079,915 + -0.2
6,079,915 + +1.0
6,079,915 + +1.0
6,079,915 + +1.1
6,079,915 + +0.9
6,079,915 + +0.5
6,079,915 + +1.2
6,079,916 - +0.6
6,079,916 - +0.9
6,079,916 - -3.2
6,079,916 - +1.4
6,079,916 - +0.3
6,079,916 - +0.9
6,079,916 - -0.8
6,079,918 + -1.3
6,079,918 + +1.0
6,079,918 + +0.7
6,079,918 + -0.1
6,079,918 + -1.9
6,079,918 + -0.8
6,079,918 + +0.4
6,079,918 + +1.2
6,079,918 + +1.5
6,079,918 + -0.7
6,079,918 + +0.3
6,079,918 + +0.1
6,079,918 + -0.8
6,079,919 - +1.1
6,079,919 - -0.7
6,079,919 - -0.1
6,079,919 - +0.3
6,079,919 - -0.1
6,079,919 - -0.8
6,079,919 - -2.5
6,079,919 - -0.0
6,079,919 - +0.1
6,079,919 - +0.7
6,079,919 - +0.9
6,079,919 - -0.1
6,079,919 - +0.9
6,079,919 - -0.5
6,079,919 - -0.5
6,079,919 - +0.3
6,079,919 - +1.3
6,079,919 - +1.0
6,079,919 - -0.6
6,079,919 - +1.0
6,079,919 - +1.9
6,079,919 - +0.2
6,079,929 - +1.0
6,079,929 - -1.2
6,079,945 + +0.3
6,079,945 + -0.1
6,079,949 + +1.6
6,079,949 + +1.2
6,079,949 + +1.4
6,079,949 + -1.9
6,079,949 + -0.5
6,080,380 + -0.0
6,080,380 + +0.1
6,080,381 - -0.7
6,080,381 - +0.0
6,080,381 - -0.5
6,080,472 + +0.3
6,080,472 + +0.4
6,080,472 + +0.6
6,080,472 + -0.6
6,080,472 + +0.4
6,080,473 - +2.5
6,080,473 - +0.8
6,080,473 - +0.3
6,080,473 - +0.5
6,080,473 - -1.4
6,080,538 + PFLU_RS27325 0.14 -1.8
6,080,620 + PFLU_RS27325 0.22 -0.7
6,080,709 + PFLU_RS27325 0.31 +0.8
6,080,755 + PFLU_RS27325 0.36 +0.9
6,080,755 + PFLU_RS27325 0.36 +0.2
6,080,755 + PFLU_RS27325 0.36 +1.9
6,080,756 - PFLU_RS27325 0.36 +0.1
6,080,756 - PFLU_RS27325 0.36 +0.2
6,080,756 - PFLU_RS27325 0.36 -0.9
6,080,756 - PFLU_RS27325 0.36 -0.4
6,080,756 - PFLU_RS27325 0.36 +0.3
6,080,756 - PFLU_RS27325 0.36 -2.5
6,080,756 - PFLU_RS27325 0.36 -1.5
6,080,995 + PFLU_RS27325 0.61 +0.3
6,080,995 + PFLU_RS27325 0.61 -1.9
6,080,995 + PFLU_RS27325 0.61 -1.7
6,080,995 + PFLU_RS27325 0.61 -2.0
6,080,996 - PFLU_RS27325 0.61 +0.8
6,080,996 - PFLU_RS27325 0.61 +0.4
6,080,996 - PFLU_RS27325 0.61 -0.5
6,080,996 - PFLU_RS27325 0.61 -0.1
6,081,046 + PFLU_RS27325 0.66 -0.1
6,081,046 + PFLU_RS27325 0.66 -1.8
6,081,046 + PFLU_RS27325 0.66 +1.7
6,081,046 + PFLU_RS27325 0.66 +0.3
6,081,046 + PFLU_RS27325 0.66 +0.1
6,081,046 + PFLU_RS27325 0.66 -0.5
6,081,046 + PFLU_RS27325 0.66 +1.5
6,081,046 + PFLU_RS27325 0.66 +0.4
6,081,046 + PFLU_RS27325 0.66 -0.7
6,081,046 + PFLU_RS27325 0.66 +1.6
6,081,047 - PFLU_RS27325 0.66 -1.7
6,081,047 - PFLU_RS27325 0.66 +0.3
6,081,047 - PFLU_RS27325 0.66 +0.2
6,081,047 - PFLU_RS27325 0.66 -0.2
6,081,047 - PFLU_RS27325 0.66 -0.5
6,081,047 - PFLU_RS27325 0.66 -1.8
6,081,047 - PFLU_RS27325 0.66 -2.3
6,081,047 - PFLU_RS27325 0.66 +1.0
6,081,047 - PFLU_RS27325 0.66 +0.3
6,081,047 - PFLU_RS27325 0.66 -1.3
6,081,048 + PFLU_RS27325 0.67 +0.3
6,081,048 + PFLU_RS27325 0.67 -1.3
6,081,048 + PFLU_RS27325 0.67 -1.1
6,081,048 + PFLU_RS27325 0.67 -1.4
6,081,048 + PFLU_RS27325 0.67 +1.4
6,081,049 - PFLU_RS27325 0.67 -1.0
6,081,049 - PFLU_RS27325 0.67 +1.0
6,081,049 - PFLU_RS27325 0.67 +0.7
6,081,049 - PFLU_RS27325 0.67 +1.1
6,081,049 - PFLU_RS27325 0.67 -0.1
6,081,123 + PFLU_RS27325 0.74 -0.9
6,081,123 + PFLU_RS27325 0.74 +0.6
6,081,123 + PFLU_RS27325 0.74 -1.2
6,081,123 + PFLU_RS27325 0.74 -0.2
6,081,123 + PFLU_RS27325 0.74 +0.9
6,081,124 - PFLU_RS27325 0.74 -0.1
6,081,124 - PFLU_RS27325 0.74 -1.3
6,081,124 - PFLU_RS27325 0.74 +0.1
6,081,124 - PFLU_RS27325 0.74 +1.0
6,081,242 + PFLU_RS27325 0.87 +2.2
6,081,242 + PFLU_RS27325 0.87 +0.3
6,081,242 + PFLU_RS27325 0.87 +0.6
6,081,242 + PFLU_RS27325 0.87 +1.0
6,081,242 + PFLU_RS27325 0.87 -1.2
6,081,242 + PFLU_RS27325 0.87 +0.2
6,081,242 + PFLU_RS27325 0.87 +1.4
6,081,242 + PFLU_RS27325 0.87 +0.5
6,081,242 + PFLU_RS27325 0.87 +0.9
6,081,242 + PFLU_RS27325 0.87 -1.6
6,081,242 + PFLU_RS27325 0.87 -0.9
6,081,243 - PFLU_RS27325 0.87 -0.6
6,081,243 - PFLU_RS27325 0.87 -0.2
6,081,243 - PFLU_RS27325 0.87 +0.1
6,081,243 - PFLU_RS27325 0.87 -0.2
6,081,243 - PFLU_RS27325 0.87 +1.6
6,081,243 - PFLU_RS27325 0.87 -1.1
6,081,243 - PFLU_RS27325 0.87 +0.1
6,081,243 - PFLU_RS27325 0.87 -0.0
6,081,243 - PFLU_RS27325 0.87 +0.4
6,081,243 - PFLU_RS27325 0.87 +1.9
6,081,243 - PFLU_RS27325 0.87 +0.4
6,081,243 - PFLU_RS27325 0.87 +0.9
6,081,243 - PFLU_RS27325 0.87 -0.1
6,081,243 - PFLU_RS27325 0.87 -1.4
6,081,243 - PFLU_RS27325 0.87 -1.1
6,081,243 - PFLU_RS27325 0.87 +0.5
6,081,243 - PFLU_RS27325 0.87 -0.2

Or see this region's nucleotide sequence