Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07120

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07115 and MMP_RS07120 are separated by 216 nucleotidesMMP_RS07120 and MMP_RS07125 are separated by 102 nucleotidesMMP_RS07125 and MMP_RS07130 are separated by 14 nucleotides MMP_RS07115: MMP_RS07115 - MBL fold metallo-hydrolase, at 1,360,985 to 1,362,253 _RS07115 MMP_RS07120: MMP_RS07120 - coenzyme F420 hydrogenase subunit alpha, at 1,362,470 to 1,363,714 _RS07120 MMP_RS07125: MMP_RS07125 - coenzyme F420-reducing hydrogenase FrhD protein, at 1,363,817 to 1,364,341 _RS07125 MMP_RS07130: MMP_RS07130 - coenzyme F420 hydrogenase subunit gamma, at 1,364,356 to 1,365,042 _RS07130 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -1 0 1at 1361.508 kb on - strand, within MMP_RS07115at 1361.538 kb on - strand, within MMP_RS07115at 1361.542 kb on - strand, within MMP_RS07115at 1361.544 kb on - strand, within MMP_RS07115at 1361.545 kb on + strand, within MMP_RS07115at 1361.679 kb on + strand, within MMP_RS07115at 1361.867 kb on + strand, within MMP_RS07115at 1361.950 kb on - strand, within MMP_RS07115at 1361.953 kb on + strand, within MMP_RS07115at 1362.131 kb on + strandat 1362.224 kb on + strandat 1362.264 kb on - strandat 1362.447 kb on - strandat 1362.488 kb on + strandat 1362.570 kb on + strandat 1362.589 kb on + strandat 1362.661 kb on - strand, within MMP_RS07120at 1362.663 kb on - strand, within MMP_RS07120at 1362.664 kb on + strand, within MMP_RS07120at 1362.664 kb on + strand, within MMP_RS07120at 1362.760 kb on + strand, within MMP_RS07120at 1362.765 kb on - strand, within MMP_RS07120at 1362.793 kb on + strand, within MMP_RS07120at 1362.810 kb on - strand, within MMP_RS07120at 1362.853 kb on + strand, within MMP_RS07120at 1362.904 kb on + strand, within MMP_RS07120at 1363.039 kb on + strand, within MMP_RS07120at 1363.111 kb on + strand, within MMP_RS07120at 1363.111 kb on + strand, within MMP_RS07120at 1363.115 kb on - strand, within MMP_RS07120at 1363.116 kb on + strand, within MMP_RS07120at 1363.193 kb on - strand, within MMP_RS07120at 1363.247 kb on - strand, within MMP_RS07120at 1363.248 kb on + strand, within MMP_RS07120at 1363.399 kb on + strand, within MMP_RS07120at 1363.535 kb on - strand, within MMP_RS07120at 1363.617 kb on - strandat 1363.638 kb on - strandat 1363.638 kb on - strandat 1363.824 kb on + strandat 1363.899 kb on - strand, within MMP_RS07125at 1363.971 kb on - strand, within MMP_RS07125at 1364.098 kb on - strand, within MMP_RS07125at 1364.176 kb on + strand, within MMP_RS07125at 1364.308 kb on + strandat 1364.381 kb on - strandat 1364.508 kb on + strand, within MMP_RS07130at 1364.513 kb on - strand, within MMP_RS07130at 1364.594 kb on - strand, within MMP_RS07130at 1364.598 kb on + strand, within MMP_RS07130at 1364.631 kb on - strand, within MMP_RS07130

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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1,361,508 - MMP_RS07115 0.41 +0.7
1,361,538 - MMP_RS07115 0.44 -0.7
1,361,542 - MMP_RS07115 0.44 +1.0
1,361,544 - MMP_RS07115 0.44 +0.6
1,361,545 + MMP_RS07115 0.44 +1.0
1,361,679 + MMP_RS07115 0.55 +0.6
1,361,867 + MMP_RS07115 0.70 +0.6
1,361,950 - MMP_RS07115 0.76 +0.9
1,361,953 + MMP_RS07115 0.76 +0.5
1,362,131 + +0.8
1,362,224 + +0.5
1,362,264 - +0.2
1,362,447 - +0.0
1,362,488 + +0.4
1,362,570 + -0.1
1,362,589 + +0.6
1,362,661 - MMP_RS07120 0.15 +0.6
1,362,663 - MMP_RS07120 0.16 +0.4
1,362,664 + MMP_RS07120 0.16 +0.2
1,362,664 + MMP_RS07120 0.16 +0.2
1,362,760 + MMP_RS07120 0.23 +0.5
1,362,765 - MMP_RS07120 0.24 +0.5
1,362,793 + MMP_RS07120 0.26 +0.4
1,362,810 - MMP_RS07120 0.27 +0.5
1,362,853 + MMP_RS07120 0.31 +0.2
1,362,904 + MMP_RS07120 0.35 +1.0
1,363,039 + MMP_RS07120 0.46 -0.0
1,363,111 + MMP_RS07120 0.51 +0.2
1,363,111 + MMP_RS07120 0.51 +0.9
1,363,115 - MMP_RS07120 0.52 +0.4
1,363,116 + MMP_RS07120 0.52 +0.3
1,363,193 - MMP_RS07120 0.58 +1.3
1,363,247 - MMP_RS07120 0.62 +0.7
1,363,248 + MMP_RS07120 0.62 +0.5
1,363,399 + MMP_RS07120 0.75 +0.1
1,363,535 - MMP_RS07120 0.86 +0.3
1,363,617 - +0.8
1,363,638 - +0.3
1,363,638 - +0.7
1,363,824 + +0.6
1,363,899 - MMP_RS07125 0.16 +0.7
1,363,971 - MMP_RS07125 0.29 +0.7
1,364,098 - MMP_RS07125 0.54 +0.5
1,364,176 + MMP_RS07125 0.68 +0.6
1,364,308 + +0.8
1,364,381 - +1.1
1,364,508 + MMP_RS07130 0.22 +0.9
1,364,513 - MMP_RS07130 0.23 +0.2
1,364,594 - MMP_RS07130 0.35 +1.0
1,364,598 + MMP_RS07130 0.35 +0.3
1,364,631 - MMP_RS07130 0.40 +0.0

Or see this region's nucleotide sequence