Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05940

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,139,321	+		MMP_RS05935	0.17	-0.3
1,139,335	-		MMP_RS05935	0.18	+0.2
1,139,336	+		MMP_RS05935	0.18	-0.1
1,139,354	+		MMP_RS05935	0.20	-0.1
1,139,496	-		MMP_RS05935	0.33	-0.2
1,139,499	-		MMP_RS05935	0.34	-0.6
1,139,500	+		MMP_RS05935	0.34	+0.1
1,139,540	-		MMP_RS05935	0.37	-0.2
1,139,575	-		MMP_RS05935	0.41	+0.3
1,139,690	+		MMP_RS05935	0.52	+0.2
1,139,703	-		MMP_RS05935	0.53	+0.1
1,139,705	-		MMP_RS05935	0.53	+0.0
1,139,705	-		MMP_RS05935	0.53	+0.6
1,139,706	+		MMP_RS05935	0.53	-0.1
1,139,706	+		MMP_RS05935	0.53	+0.2
1,139,706	+		MMP_RS05935	0.53	+0.2
1,139,709	-		MMP_RS05935	0.53	+0.5
1,139,828	-		MMP_RS05935	0.65	+0.2
1,139,832	+		MMP_RS05935	0.65	-0.3
1,139,834	+		MMP_RS05935	0.65	+0.4
1,139,937	+		MMP_RS05935	0.75	-0.4
1,139,970	+		MMP_RS05935	0.78	-0.4
1,139,970	+		MMP_RS05935	0.78	-0.3
1,139,983	+		MMP_RS05935	0.79	-0.0
1,139,986	-		MMP_RS05935	0.80	-0.2
1,140,110	+				-0.1
1,140,130	+				+0.1
1,140,259	-				+0.1
1,140,262	+				-0.3
1,140,335	-		MMP_RS05940	0.21	+0.3
1,140,336	+		MMP_RS05940	0.21	+0.4
1,140,462	-		MMP_RS05940	0.40	+0.4
1,140,632	+		MMP_RS05940	0.67	+0.3
1,140,686	+		MMP_RS05940	0.75	+0.6
1,140,697	+		MMP_RS05940	0.77	+0.2
1,140,697	+		MMP_RS05940	0.77	+0.2
1,140,781	+		MMP_RS05940	0.90	+0.7
1,140,828	-				+1.0
1,140,831	-				+0.2
1,140,885	+				+0.4
1,140,885	+				-0.5
1,140,886	-				+0.6
1,140,967	+				+0.4
1,140,967	+				+0.2
1,140,967	+				+0.2
1,140,967	+				+0.3
1,140,971	+				-0.5
1,141,146	+		MMP_RS05945	0.34	+0.3
1,141,301	+		MMP_RS05945	0.77	+0.5
1,141,302	-		MMP_RS05945	0.77	-0.5
1,141,317	+		MMP_RS05945	0.81	+0.3
1,141,317	+		MMP_RS05945	0.81	-0.0
1,141,377	+				+0.5
1,141,384	-				-0.1
1,141,385	+				+0.2
1,141,418	-				+0.1
1,141,418	-				+0.4
1,141,418	-				+0.2
1,141,421	-				+0.0
1,141,421	-				+0.9
1,141,421	-				+0.0
1,141,422	+				+0.4
1,141,423	-				+0.2
1,141,424	+				-0.2
1,141,425	-				-0.0
1,141,425	-				+0.2
1,141,425	-				+0.2
1,141,425	-				+0.1
1,141,425	-				-0.1
1,141,426	+				+0.4
1,141,426	+				+1.0
1,141,426	+				+0.6
1,141,429	-				+0.6
1,141,429	-				+0.3
1,141,430	+				+0.6
1,141,432	-				-0.2
1,141,486	+				+0.2
1,141,491	-				-0.1
1,141,610	+		MMP_RS05950	0.15	+0.0
1,141,640	-		MMP_RS05950	0.17	+0.0
1,141,716	+		MMP_RS05950	0.24	-0.1
1,141,716	+		MMP_RS05950	0.24	-0.1
1,141,762	-		MMP_RS05950	0.28	-0.2
1,141,798	+		MMP_RS05950	0.31	-0.0