Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05230 and MMP_RS05235 are separated by 154 nucleotides MMP_RS05235 and MMP_RS05240 are separated by 214 nucleotides
MMP_RS05230: MMP_RS05230 - glutamate--tRNA ligase, at 995,327 to 996,994
_RS05230
MMP_RS05235: MMP_RS05235 - exodeoxyribonuclease III, at 997,149 to 997,898
_RS05235
MMP_RS05240: MMP_RS05240 - carbamoyl-phosphate synthase large subunit, at 998,113 to 1,001,358
_RS05240
Position (kb) 997
998 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 996.438 kb on - strand at 996.909 kb on + strand at 996.972 kb on - strand at 996.972 kb on - strand at 996.973 kb on + strand at 996.981 kb on + strand at 996.994 kb on - strand at 996.999 kb on + strand at 997.010 kb on - strand at 997.043 kb on - strand at 997.102 kb on - strand at 997.109 kb on + strand at 997.151 kb on + strand at 997.158 kb on - strand at 997.159 kb on + strand at 997.160 kb on - strand at 997.160 kb on - strand at 997.192 kb on + strand at 997.204 kb on + strand at 997.204 kb on + strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.205 kb on - strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.206 kb on + strand at 997.207 kb on - strand at 997.207 kb on - strand at 997.207 kb on - strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.244 kb on - strand, within MMP_RS05235 at 997.257 kb on - strand, within MMP_RS05235 at 997.258 kb on + strand, within MMP_RS05235 at 997.312 kb on - strand, within MMP_RS05235 at 997.317 kb on + strand, within MMP_RS05235 at 997.600 kb on - strand, within MMP_RS05235 at 997.603 kb on - strand, within MMP_RS05235 at 997.622 kb on - strand, within MMP_RS05235 at 997.800 kb on - strand, within MMP_RS05235 at 997.800 kb on - strand, within MMP_RS05235 at 997.801 kb on + strand, within MMP_RS05235 at 997.875 kb on - strand at 997.876 kb on + strand at 997.876 kb on + strand at 997.926 kb on + strand at 997.931 kb on + strand at 997.933 kb on - strand at 997.936 kb on + strand at 997.945 kb on + strand at 997.990 kb on + strand at 998.008 kb on + strand at 998.008 kb on + strand at 998.011 kb on - strand at 998.027 kb on - strand at 998.028 kb on + strand at 998.028 kb on + strand at 998.047 kb on - strand at 998.081 kb on - strand at 998.084 kb on - strand at 998.085 kb on + strand at 998.834 kb on - strand at 998.834 kb on - strand at 998.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 996,438 - -1.4 996,909 + -1.9 996,972 - -3.0 996,972 - -1.9 996,973 + -1.4 996,981 + -3.2 996,994 - -3.9 996,999 + -2.5 997,010 - -2.1 997,043 - +0.2 997,102 - +0.3 997,109 + +1.6 997,151 + -0.4 997,158 - +0.6 997,159 + +0.5 997,160 - +0.3 997,160 - -0.3 997,192 + +0.2 997,204 + -0.4 997,204 + -0.3 997,205 - -0.3 997,205 - -0.0 997,205 - +0.3 997,205 - -0.4 997,205 - +0.1 997,205 - -0.3 997,205 - -0.3 997,205 - +0.4 997,205 - -0.2 997,205 - -0.9 997,205 - -0.4 997,205 - +0.3 997,206 + -0.3 997,206 + +0.4 997,206 + -0.3 997,206 + +0.7 997,206 + +0.5 997,206 + +0.3 997,206 + -0.1 997,206 + +0.1 997,206 + -0.3 997,206 + -0.2 997,206 + +0.1 997,206 + -0.0 997,206 + -0.2 997,207 - +0.0 997,207 - -0.1 997,207 - +0.4 997,208 + +0.1 997,208 + -0.2 997,208 + +0.3 997,244 - MMP_RS05235 0.13 +1.1 997,257 - MMP_RS05235 0.14 +0.2 997,258 + MMP_RS05235 0.15 +0.6 997,312 - MMP_RS05235 0.22 +0.1 997,317 + MMP_RS05235 0.22 -0.1 997,600 - MMP_RS05235 0.60 -0.2 997,603 - MMP_RS05235 0.61 +0.3 997,622 - MMP_RS05235 0.63 +0.1 997,800 - MMP_RS05235 0.87 -0.0 997,800 - MMP_RS05235 0.87 +0.1 997,801 + MMP_RS05235 0.87 +0.1 997,875 - -0.5 997,876 + -0.1 997,876 + +0.1 997,926 + +0.6 997,931 + -0.3 997,933 - +0.0 997,936 + +0.1 997,945 + -0.1 997,990 + +0.0 998,008 + +0.1 998,008 + -0.0 998,011 - +0.9 998,027 - +0.5 998,028 + +0.7 998,028 + +0.9 998,047 - +0.9 998,081 - -1.3 998,084 - -0.7 998,085 + -0.1 998,834 - -1.8 998,834 - -2.9 998,877 + -2.0
Or see this region's nucleotide sequence