Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05165 and MMP_RS05170 are separated by 84 nucleotides MMP_RS05170 and MMP_RS05175 overlap by 4 nucleotides MMP_RS05175 and MMP_RS05180 are separated by 213 nucleotides
MMP_RS05165: MMP_RS05165 - right-handed parallel beta-helix repeat-containing protein, at 983,537 to 984,193
_RS05165
MMP_RS05170: MMP_RS05170 - lysine exporter LysO family protein, at 984,278 to 984,865
_RS05170
MMP_RS05175: MMP_RS05175 - hypothetical protein, at 984,862 to 985,110
_RS05175
MMP_RS05180: MMP_RS05180 - Nre family DNA repair protein, at 985,324 to 986,544
_RS05180
Position (kb) 984
985 Strain fitness (log2 ratio) -1
0
1 at 983.285 kb on - strand at 983.291 kb on - strand at 983.313 kb on - strand at 983.314 kb on + strand at 983.319 kb on + strand at 983.324 kb on + strand at 983.341 kb on - strand at 983.342 kb on + strand at 983.412 kb on - strand at 983.583 kb on - strand at 983.595 kb on - strand at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.646 kb on - strand, within MMP_RS05165 at 983.647 kb on + strand, within MMP_RS05165 at 983.686 kb on - strand, within MMP_RS05165 at 983.686 kb on - strand, within MMP_RS05165 at 983.698 kb on + strand, within MMP_RS05165 at 983.698 kb on + strand, within MMP_RS05165 at 983.700 kb on - strand, within MMP_RS05165 at 983.701 kb on + strand, within MMP_RS05165 at 983.717 kb on - strand, within MMP_RS05165 at 983.754 kb on - strand, within MMP_RS05165 at 983.798 kb on + strand, within MMP_RS05165 at 983.801 kb on + strand, within MMP_RS05165 at 983.804 kb on + strand, within MMP_RS05165 at 983.826 kb on - strand, within MMP_RS05165 at 983.844 kb on - strand, within MMP_RS05165 at 983.977 kb on + strand, within MMP_RS05165 at 983.988 kb on - strand, within MMP_RS05165 at 983.990 kb on - strand, within MMP_RS05165 at 983.990 kb on - strand, within MMP_RS05165 at 983.991 kb on + strand, within MMP_RS05165 at 984.011 kb on - strand, within MMP_RS05165 at 984.011 kb on - strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.012 kb on + strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.015 kb on - strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.016 kb on + strand, within MMP_RS05165 at 984.017 kb on - strand, within MMP_RS05165 at 984.020 kb on + strand, within MMP_RS05165 at 984.020 kb on + strand, within MMP_RS05165 at 984.083 kb on - strand, within MMP_RS05165 at 984.084 kb on + strand, within MMP_RS05165 at 984.093 kb on - strand, within MMP_RS05165 at 984.093 kb on - strand, within MMP_RS05165 at 984.159 kb on - strand at 984.160 kb on + strand at 984.272 kb on - strand at 984.362 kb on - strand, within MMP_RS05170 at 984.478 kb on - strand, within MMP_RS05170 at 984.479 kb on + strand, within MMP_RS05170 at 984.479 kb on + strand, within MMP_RS05170 at 984.540 kb on - strand, within MMP_RS05170 at 984.667 kb on - strand, within MMP_RS05170 at 984.667 kb on - strand, within MMP_RS05170 at 984.766 kb on + strand, within MMP_RS05170 at 984.766 kb on + strand, within MMP_RS05170 at 984.805 kb on - strand, within MMP_RS05170 at 984.820 kb on - strand at 984.821 kb on + strand at 984.873 kb on - strand at 984.906 kb on - strand, within MMP_RS05175 at 984.914 kb on + strand, within MMP_RS05175 at 984.940 kb on - strand, within MMP_RS05175 at 984.941 kb on + strand, within MMP_RS05175 at 984.941 kb on + strand, within MMP_RS05175 at 985.079 kb on + strand, within MMP_RS05175 at 985.096 kb on + strand at 985.097 kb on - strand at 985.098 kb on + strand at 985.098 kb on + strand at 985.110 kb on - strand at 985.142 kb on - strand at 985.158 kb on + strand at 985.159 kb on - strand at 985.162 kb on - strand at 985.162 kb on - strand at 985.164 kb on - strand at 985.165 kb on + strand at 985.165 kb on + strand at 985.166 kb on - strand at 985.167 kb on + strand at 985.175 kb on + strand at 985.175 kb on + strand at 985.186 kb on - strand at 985.187 kb on + strand at 985.189 kb on + strand at 985.244 kb on + strand at 985.244 kb on + strand at 985.247 kb on - strand at 985.247 kb on - strand at 985.247 kb on - strand at 985.247 kb on - strand at 985.251 kb on - strand at 985.252 kb on + strand at 985.254 kb on - strand at 985.254 kb on - strand at 985.323 kb on - strand at 985.400 kb on - strand at 985.401 kb on + strand at 985.446 kb on - strand, within MMP_RS05180 at 985.801 kb on + strand, within MMP_RS05180 at 985.852 kb on - strand, within MMP_RS05180 at 985.852 kb on - strand, within MMP_RS05180
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 983,285 - +0.5 983,291 - +0.1 983,313 - +0.2 983,314 + +0.4 983,319 + +0.1 983,324 + -0.5 983,341 - +0.4 983,342 + +0.5 983,412 - +0.2 983,583 - +0.2 983,595 - -0.1 983,646 - MMP_RS05165 0.17 +0.2 983,646 - MMP_RS05165 0.17 -0.3 983,646 - MMP_RS05165 0.17 -0.3 983,646 - MMP_RS05165 0.17 -0.1 983,647 + MMP_RS05165 0.17 +0.3 983,686 - MMP_RS05165 0.23 -0.1 983,686 - MMP_RS05165 0.23 -0.3 983,698 + MMP_RS05165 0.25 -0.0 983,698 + MMP_RS05165 0.25 +0.3 983,700 - MMP_RS05165 0.25 +0.4 983,701 + MMP_RS05165 0.25 -0.2 983,717 - MMP_RS05165 0.27 -0.1 983,754 - MMP_RS05165 0.33 -0.5 983,798 + MMP_RS05165 0.40 -0.2 983,801 + MMP_RS05165 0.40 -0.1 983,804 + MMP_RS05165 0.41 +0.1 983,826 - MMP_RS05165 0.44 -0.2 983,844 - MMP_RS05165 0.47 +0.5 983,977 + MMP_RS05165 0.67 +0.8 983,988 - MMP_RS05165 0.69 -0.1 983,990 - MMP_RS05165 0.69 +0.0 983,990 - MMP_RS05165 0.69 -0.1 983,991 + MMP_RS05165 0.69 -0.2 984,011 - MMP_RS05165 0.72 +0.0 984,011 - MMP_RS05165 0.72 +0.4 984,012 + MMP_RS05165 0.72 -0.5 984,012 + MMP_RS05165 0.72 +0.0 984,012 + MMP_RS05165 0.72 +0.2 984,012 + MMP_RS05165 0.72 -0.5 984,015 - MMP_RS05165 0.73 +0.3 984,015 - MMP_RS05165 0.73 +0.2 984,015 - MMP_RS05165 0.73 +0.2 984,015 - MMP_RS05165 0.73 +0.1 984,016 + MMP_RS05165 0.73 -0.1 984,016 + MMP_RS05165 0.73 +0.4 984,016 + MMP_RS05165 0.73 +0.2 984,017 - MMP_RS05165 0.73 +0.1 984,020 + MMP_RS05165 0.74 +0.2 984,020 + MMP_RS05165 0.74 -0.0 984,083 - MMP_RS05165 0.83 +0.5 984,084 + MMP_RS05165 0.83 -0.3 984,093 - MMP_RS05165 0.85 +0.5 984,093 - MMP_RS05165 0.85 -0.3 984,159 - -0.1 984,160 + +0.6 984,272 - +0.4 984,362 - MMP_RS05170 0.14 +0.3 984,478 - MMP_RS05170 0.34 -0.2 984,479 + MMP_RS05170 0.34 -0.4 984,479 + MMP_RS05170 0.34 +0.0 984,540 - MMP_RS05170 0.45 +1.1 984,667 - MMP_RS05170 0.66 +0.4 984,667 - MMP_RS05170 0.66 +0.4 984,766 + MMP_RS05170 0.83 +0.1 984,766 + MMP_RS05170 0.83 +0.3 984,805 - MMP_RS05170 0.90 +0.0 984,820 - -0.1 984,821 + +0.6 984,873 - -0.0 984,906 - MMP_RS05175 0.18 +0.2 984,914 + MMP_RS05175 0.21 +0.5 984,940 - MMP_RS05175 0.31 -0.1 984,941 + MMP_RS05175 0.32 +0.4 984,941 + MMP_RS05175 0.32 -0.2 985,079 + MMP_RS05175 0.87 -0.2 985,096 + +0.2 985,097 - -0.2 985,098 + +0.5 985,098 + -0.1 985,110 - -0.0 985,142 - +0.1 985,158 + +0.6 985,159 - +0.0 985,162 - +0.2 985,162 - +0.1 985,164 - +0.0 985,165 + +0.0 985,165 + -0.7 985,166 - -0.5 985,167 + -0.2 985,175 + +0.1 985,175 + +0.1 985,186 - -0.1 985,187 + +0.4 985,189 + +0.5 985,244 + -0.1 985,244 + +0.5 985,247 - -0.0 985,247 - -0.6 985,247 - +0.1 985,247 - +0.3 985,251 - +0.8 985,252 + +0.0 985,254 - -0.2 985,254 - +0.5 985,323 - -0.3 985,400 - +0.5 985,401 + +0.4 985,446 - MMP_RS05180 0.10 +0.3 985,801 + MMP_RS05180 0.39 +0.3 985,852 - MMP_RS05180 0.43 +0.9 985,852 - MMP_RS05180 0.43 +1.0
Or see this region's nucleotide sequence