Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05050

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05040 and MMP_RS05045 overlap by 14 nucleotidesMMP_RS05045 and MMP_RS05050 are separated by 51 nucleotidesMMP_RS05050 and MMP_RS05055 are separated by 219 nucleotidesMMP_RS05055 and MMP_RS05060 are separated by 0 nucleotides MMP_RS05040: MMP_RS05040 - permease, at 959,986 to 960,843 _RS05040 MMP_RS05045: MMP_RS05045 - 4Fe-4S binding protein, at 960,830 to 961,489 _RS05045 MMP_RS05050: MMP_RS05050 - substrate-binding domain-containing protein, at 961,541 to 962,392 _RS05050 MMP_RS05055: MMP_RS05055 - DUF166 domain-containing protein, at 962,612 to 963,268 _RS05055 MMP_RS05060: MMP_RS05060 - AAA family ATPase, at 963,269 to 964,051 _RS05060 Position (kb) 961 962 963Strain fitness (log2 ratio) -1 0 1at 960.557 kb on + strand, within MMP_RS05040at 960.558 kb on - strand, within MMP_RS05040at 960.571 kb on + strand, within MMP_RS05040at 960.571 kb on + strand, within MMP_RS05040at 960.667 kb on + strand, within MMP_RS05040at 960.667 kb on + strand, within MMP_RS05040at 960.697 kb on + strand, within MMP_RS05040at 960.743 kb on - strand, within MMP_RS05040at 960.743 kb on - strand, within MMP_RS05040at 960.744 kb on + strand, within MMP_RS05040at 960.769 kb on - strandat 960.773 kb on - strandat 960.774 kb on + strandat 960.819 kb on - strandat 960.931 kb on + strand, within MMP_RS05045at 960.934 kb on - strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.956 kb on - strand, within MMP_RS05045at 960.963 kb on + strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.989 kb on + strand, within MMP_RS05045at 960.989 kb on + strand, within MMP_RS05045at 960.999 kb on - strand, within MMP_RS05045at 961.002 kb on - strand, within MMP_RS05045at 961.003 kb on + strand, within MMP_RS05045at 961.146 kb on + strand, within MMP_RS05045at 961.181 kb on + strand, within MMP_RS05045at 961.185 kb on + strand, within MMP_RS05045at 961.203 kb on - strand, within MMP_RS05045at 961.217 kb on - strand, within MMP_RS05045at 961.262 kb on + strand, within MMP_RS05045at 961.325 kb on - strand, within MMP_RS05045at 961.326 kb on + strand, within MMP_RS05045at 961.365 kb on - strand, within MMP_RS05045at 961.381 kb on - strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.386 kb on + strand, within MMP_RS05045at 961.392 kb on + strand, within MMP_RS05045at 961.460 kb on + strandat 961.465 kb on - strandat 961.508 kb on - strandat 961.542 kb on - strandat 961.543 kb on + strandat 961.543 kb on + strandat 961.543 kb on + strandat 961.550 kb on - strandat 961.573 kb on + strandat 961.573 kb on + strandat 961.573 kb on + strandat 961.581 kb on - strandat 961.582 kb on + strandat 961.584 kb on + strandat 961.607 kb on - strandat 961.636 kb on - strand, within MMP_RS05050at 961.637 kb on + strand, within MMP_RS05050at 961.677 kb on - strand, within MMP_RS05050at 961.699 kb on - strand, within MMP_RS05050at 961.702 kb on + strand, within MMP_RS05050at 961.721 kb on + strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.731 kb on + strand, within MMP_RS05050at 961.766 kb on + strand, within MMP_RS05050at 961.787 kb on + strand, within MMP_RS05050at 961.892 kb on + strand, within MMP_RS05050at 961.988 kb on - strand, within MMP_RS05050at 962.159 kb on - strand, within MMP_RS05050at 962.379 kb on - strandat 962.395 kb on + strandat 962.395 kb on + strandat 962.452 kb on + strandat 962.460 kb on + strandat 962.463 kb on + strandat 962.467 kb on + strandat 962.487 kb on - strandat 962.488 kb on + strandat 962.488 kb on + strandat 962.499 kb on - strandat 962.545 kb on - strandat 962.564 kb on - strandat 962.565 kb on + strandat 962.566 kb on - strandat 962.566 kb on - strandat 962.566 kb on - strandat 962.567 kb on + strandat 962.568 kb on - strandat 962.568 kb on - strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.573 kb on + strandat 962.573 kb on + strandat 962.598 kb on + strandat 962.620 kb on + strandat 962.625 kb on - strandat 962.663 kb on + strandat 962.735 kb on + strand, within MMP_RS05055at 962.779 kb on - strand, within MMP_RS05055at 962.788 kb on - strand, within MMP_RS05055at 962.789 kb on + strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.793 kb on + strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.795 kb on + strand, within MMP_RS05055at 962.795 kb on + strand, within MMP_RS05055at 962.799 kb on - strand, within MMP_RS05055at 962.837 kb on - strand, within MMP_RS05055at 962.838 kb on + strand, within MMP_RS05055at 962.852 kb on - strand, within MMP_RS05055at 963.023 kb on + strand, within MMP_RS05055at 963.039 kb on - strand, within MMP_RS05055at 963.040 kb on + strand, within MMP_RS05055at 963.047 kb on + strand, within MMP_RS05055at 963.047 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.137 kb on + strand, within MMP_RS05055at 963.366 kb on - strand, within MMP_RS05060at 963.366 kb on - strand, within MMP_RS05060at 963.367 kb on + strand, within MMP_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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960,557 + MMP_RS05040 0.67 +0.3
960,558 - MMP_RS05040 0.67 +0.2
960,571 + MMP_RS05040 0.68 -0.2
960,571 + MMP_RS05040 0.68 +0.2
960,667 + MMP_RS05040 0.79 +0.4
960,667 + MMP_RS05040 0.79 -0.2
960,697 + MMP_RS05040 0.83 +0.1
960,743 - MMP_RS05040 0.88 -0.0
960,743 - MMP_RS05040 0.88 +0.4
960,744 + MMP_RS05040 0.88 -0.1
960,769 - +0.0
960,773 - -0.0
960,774 + -0.3
960,819 - +0.5
960,931 + MMP_RS05045 0.15 -0.1
960,934 - MMP_RS05045 0.16 +0.1
960,935 + MMP_RS05045 0.16 -0.2
960,935 + MMP_RS05045 0.16 -0.2
960,935 + MMP_RS05045 0.16 +0.1
960,956 - MMP_RS05045 0.19 -0.1
960,963 + MMP_RS05045 0.20 -0.1
960,986 - MMP_RS05045 0.24 +0.1
960,986 - MMP_RS05045 0.24 +1.0
960,986 - MMP_RS05045 0.24 +0.0
960,986 - MMP_RS05045 0.24 +0.2
960,986 - MMP_RS05045 0.24 +0.6
960,987 + MMP_RS05045 0.24 -0.2
960,987 + MMP_RS05045 0.24 -0.2
960,987 + MMP_RS05045 0.24 -0.1
960,987 + MMP_RS05045 0.24 +0.3
960,987 + MMP_RS05045 0.24 +0.4
960,987 + MMP_RS05045 0.24 +0.2
960,987 + MMP_RS05045 0.24 -0.0
960,987 + MMP_RS05045 0.24 -0.1
960,987 + MMP_RS05045 0.24 +0.1
960,989 + MMP_RS05045 0.24 +0.2
960,989 + MMP_RS05045 0.24 +0.3
960,999 - MMP_RS05045 0.26 -0.0
961,002 - MMP_RS05045 0.26 +0.1
961,003 + MMP_RS05045 0.26 -0.2
961,146 + MMP_RS05045 0.48 -0.3
961,181 + MMP_RS05045 0.53 +0.1
961,185 + MMP_RS05045 0.54 +0.3
961,203 - MMP_RS05045 0.57 +0.4
961,217 - MMP_RS05045 0.59 +0.2
961,262 + MMP_RS05045 0.65 -0.4
961,325 - MMP_RS05045 0.75 -0.2
961,326 + MMP_RS05045 0.75 +0.1
961,365 - MMP_RS05045 0.81 +0.1
961,381 - MMP_RS05045 0.83 +0.1
961,382 + MMP_RS05045 0.84 -0.0
961,382 + MMP_RS05045 0.84 +0.3
961,382 + MMP_RS05045 0.84 -0.2
961,386 + MMP_RS05045 0.84 +0.1
961,392 + MMP_RS05045 0.85 +0.2
961,460 + +0.1
961,465 - +0.0
961,508 - +0.6
961,542 - -0.2
961,543 + +0.3
961,543 + +0.2
961,543 + -0.0
961,550 - +0.1
961,573 + -0.2
961,573 + +0.7
961,573 + +0.1
961,581 - -0.1
961,582 + +0.1
961,584 + +0.5
961,607 - -0.3
961,636 - MMP_RS05050 0.11 +0.1
961,637 + MMP_RS05050 0.11 -0.1
961,677 - MMP_RS05050 0.16 -0.1
961,699 - MMP_RS05050 0.19 -0.2
961,702 + MMP_RS05050 0.19 +0.5
961,721 + MMP_RS05050 0.21 +0.4
961,724 - MMP_RS05050 0.21 +0.3
961,724 - MMP_RS05050 0.21 -0.2
961,725 + MMP_RS05050 0.22 +0.3
961,725 + MMP_RS05050 0.22 -0.0
961,725 + MMP_RS05050 0.22 +0.5
961,731 + MMP_RS05050 0.22 +0.1
961,766 + MMP_RS05050 0.26 +0.0
961,787 + MMP_RS05050 0.29 -0.2
961,892 + MMP_RS05050 0.41 -0.1
961,988 - MMP_RS05050 0.52 +0.1
962,159 - MMP_RS05050 0.73 +0.0
962,379 - -0.2
962,395 + +0.2
962,395 + +0.1
962,452 + -0.2
962,460 + -0.2
962,463 + -0.1
962,467 + +0.2
962,487 - -0.4
962,488 + -0.1
962,488 + -0.8
962,499 - +0.0
962,545 - -0.4
962,564 - -0.2
962,565 + +0.1
962,566 - -0.3
962,566 - -0.4
962,566 - -0.1
962,567 + -0.4
962,568 - +0.4
962,568 - +0.0
962,569 + -0.3
962,569 + -0.3
962,569 + +0.0
962,569 + -0.1
962,569 + -0.2
962,573 + +0.2
962,573 + +0.4
962,598 + -0.1
962,620 + -0.2
962,625 - -0.4
962,663 + +0.1
962,735 + MMP_RS05055 0.19 -0.2
962,779 - MMP_RS05055 0.25 -0.6
962,788 - MMP_RS05055 0.27 +0.1
962,789 + MMP_RS05055 0.27 -0.9
962,792 - MMP_RS05055 0.27 -0.6
962,792 - MMP_RS05055 0.27 -0.4
962,792 - MMP_RS05055 0.27 -0.6
962,792 - MMP_RS05055 0.27 +0.1
962,793 + MMP_RS05055 0.28 +0.1
962,794 - MMP_RS05055 0.28 -0.2
962,794 - MMP_RS05055 0.28 -0.4
962,794 - MMP_RS05055 0.28 -0.7
962,794 - MMP_RS05055 0.28 -0.3
962,794 - MMP_RS05055 0.28 -0.3
962,794 - MMP_RS05055 0.28 -0.7
962,795 + MMP_RS05055 0.28 -0.5
962,795 + MMP_RS05055 0.28 -0.2
962,799 - MMP_RS05055 0.28 -0.1
962,837 - MMP_RS05055 0.34 -0.6
962,838 + MMP_RS05055 0.34 -0.7
962,852 - MMP_RS05055 0.37 -1.1
963,023 + MMP_RS05055 0.63 -0.3
963,039 - MMP_RS05055 0.65 -0.3
963,040 + MMP_RS05055 0.65 +0.5
963,047 + MMP_RS05055 0.66 -0.6
963,047 + MMP_RS05055 0.66 -1.2
963,049 + MMP_RS05055 0.67 -0.6
963,049 + MMP_RS05055 0.67 -0.4
963,049 + MMP_RS05055 0.67 -0.5
963,137 + MMP_RS05055 0.80 -0.1
963,366 - MMP_RS05060 0.12 -0.9
963,366 - MMP_RS05060 0.12 -0.4
963,367 + MMP_RS05060 0.13 -0.5

Or see this region's nucleotide sequence