Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04720 and MMP_RS04725 are separated by 38 nucleotides MMP_RS04725 and MMP_RS04730 are separated by 43 nucleotides MMP_RS04730 and MMP_RS04735 are separated by 75 nucleotides MMP_RS04735 and MMP_RS04740 are separated by 41 nucleotides MMP_RS04740 and MMP_RS04745 are separated by 18 nucleotides
MMP_RS04720: MMP_RS04720 - DedA family protein, at 901,906 to 902,388
_RS04720
MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855
_RS04725
MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480
_RS04730
MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750
_RS04735
MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169
_RS04740
MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895
_RS04745
Position (kb) 902
903
904 Strain fitness (log2 ratio) -1
0
1
2
3 at 901.931 kb on + strand at 902.011 kb on + strand, within MMP_RS04720 at 902.012 kb on - strand, within MMP_RS04720 at 902.016 kb on - strand, within MMP_RS04720 at 902.017 kb on + strand, within MMP_RS04720 at 902.017 kb on + strand, within MMP_RS04720 at 902.337 kb on + strand, within MMP_RS04720 at 902.341 kb on - strand at 902.366 kb on - strand at 902.391 kb on - strand at 902.426 kb on + strand at 902.482 kb on + strand, within MMP_RS04725 at 902.482 kb on + strand, within MMP_RS04725 at 902.482 kb on + strand, within MMP_RS04725 at 902.552 kb on - strand, within MMP_RS04725 at 902.557 kb on + strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.643 kb on - strand, within MMP_RS04725 at 902.669 kb on - strand, within MMP_RS04725 at 902.691 kb on - strand, within MMP_RS04725 at 902.692 kb on + strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.742 kb on + strand, within MMP_RS04725 at 902.758 kb on + strand, within MMP_RS04725 at 902.758 kb on + strand, within MMP_RS04725 at 902.817 kb on - strand at 902.873 kb on - strand at 902.873 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.898 kb on + strand at 902.898 kb on + strand at 902.900 kb on - strand at 902.902 kb on - strand at 902.903 kb on + strand at 902.903 kb on + strand at 902.943 kb on - strand at 903.018 kb on + strand, within MMP_RS04730 at 903.088 kb on - strand, within MMP_RS04730 at 903.094 kb on + strand, within MMP_RS04730 at 903.160 kb on + strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.228 kb on + strand, within MMP_RS04730 at 903.243 kb on - strand, within MMP_RS04730 at 903.244 kb on + strand, within MMP_RS04730 at 903.247 kb on - strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.250 kb on + strand, within MMP_RS04730 at 903.295 kb on - strand, within MMP_RS04730 at 903.301 kb on + strand, within MMP_RS04730 at 903.422 kb on + strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.542 kb on - strand at 903.542 kb on - strand at 903.578 kb on + strand, within MMP_RS04735 at 903.632 kb on + strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.662 kb on + strand, within MMP_RS04735 at 903.793 kb on - strand at 903.794 kb on + strand at 903.804 kb on - strand at 903.909 kb on - strand, within MMP_RS04740 at 903.919 kb on + strand, within MMP_RS04740 at 903.954 kb on + strand, within MMP_RS04740 at 903.958 kb on + strand, within MMP_RS04740 at 903.960 kb on + strand, within MMP_RS04740 at 904.189 kb on - strand at 904.189 kb on - strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.199 kb on - strand at 904.200 kb on + strand at 904.392 kb on - strand, within MMP_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 901,931 + +0.1 902,011 + MMP_RS04720 0.22 +0.1 902,012 - MMP_RS04720 0.22 +2.9 902,016 - MMP_RS04720 0.23 +1.0 902,017 + MMP_RS04720 0.23 -0.1 902,017 + MMP_RS04720 0.23 -0.7 902,337 + MMP_RS04720 0.89 -1.3 902,341 - -0.3 902,366 - +0.2 902,391 - -0.0 902,426 + +0.1 902,482 + MMP_RS04725 0.13 +0.2 902,482 + MMP_RS04725 0.13 -0.1 902,482 + MMP_RS04725 0.13 -0.2 902,552 - MMP_RS04725 0.29 -0.1 902,557 + MMP_RS04725 0.30 -0.1 902,575 - MMP_RS04725 0.34 -0.2 902,575 - MMP_RS04725 0.34 +0.2 902,575 - MMP_RS04725 0.34 +0.0 902,643 - MMP_RS04725 0.50 +0.4 902,669 - MMP_RS04725 0.56 +0.0 902,691 - MMP_RS04725 0.62 +0.1 902,692 + MMP_RS04725 0.62 +0.0 902,696 - MMP_RS04725 0.63 +0.5 902,696 - MMP_RS04725 0.63 -0.1 902,696 - MMP_RS04725 0.63 +0.2 902,742 + MMP_RS04725 0.73 -0.0 902,758 + MMP_RS04725 0.77 +0.4 902,758 + MMP_RS04725 0.77 +0.0 902,817 - +0.5 902,873 - -0.0 902,873 - +0.4 902,897 - -0.3 902,897 - +0.5 902,897 - +0.4 902,898 + +0.5 902,898 + -0.3 902,900 - -0.5 902,902 - +0.6 902,903 + +0.2 902,903 + +0.5 902,943 - -0.0 903,018 + MMP_RS04730 0.20 +0.1 903,088 - MMP_RS04730 0.32 -0.1 903,094 + MMP_RS04730 0.34 +0.3 903,160 + MMP_RS04730 0.45 +0.4 903,171 - MMP_RS04730 0.47 -0.0 903,171 - MMP_RS04730 0.47 +0.3 903,228 + MMP_RS04730 0.57 +0.2 903,243 - MMP_RS04730 0.59 +0.1 903,244 + MMP_RS04730 0.59 +0.2 903,247 - MMP_RS04730 0.60 +0.8 903,248 + MMP_RS04730 0.60 -0.3 903,248 + MMP_RS04730 0.60 +0.3 903,248 + MMP_RS04730 0.60 -0.1 903,248 + MMP_RS04730 0.60 +0.2 903,250 + MMP_RS04730 0.60 +0.3 903,295 - MMP_RS04730 0.68 +0.1 903,301 + MMP_RS04730 0.69 +0.1 903,422 + -1.2 903,501 - -0.3 903,501 - +0.1 903,501 - +0.3 903,502 + +0.5 903,502 + +0.2 903,502 + +0.2 903,542 - +0.9 903,542 - +0.2 903,578 + MMP_RS04735 0.11 +0.2 903,632 + MMP_RS04735 0.39 -0.4 903,661 - MMP_RS04735 0.54 +0.0 903,661 - MMP_RS04735 0.54 +0.1 903,662 + MMP_RS04735 0.54 -0.3 903,793 - +0.2 903,794 + -0.1 903,804 - -0.1 903,909 - MMP_RS04740 0.31 +0.3 903,919 + MMP_RS04740 0.34 +0.4 903,954 + MMP_RS04740 0.43 +0.4 903,958 + MMP_RS04740 0.44 -0.0 903,960 + MMP_RS04740 0.44 +0.4 904,189 - +0.2 904,189 - +0.0 904,194 + -0.1 904,194 + +0.1 904,194 + +1.1 904,195 - +0.3 904,195 - +0.4 904,195 - -0.4 904,195 - +0.1 904,195 - -0.7 904,195 - -0.2 904,195 - +0.0 904,195 - +0.2 904,195 - +0.0 904,195 - +0.1 904,195 - +0.3 904,196 + +0.3 904,196 + +0.3 904,196 + +0.3 904,196 + +0.3 904,196 + +0.1 904,196 + +0.6 904,196 + -0.1 904,196 + -0.6 904,196 + -0.2 904,199 - -0.1 904,200 + -0.1 904,392 - MMP_RS04745 0.29 -0.3
Or see this region's nucleotide sequence