Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04425 and MMP_RS04430 are separated by 43 nucleotides MMP_RS04430 and MMP_RS04435 are separated by 27 nucleotides MMP_RS04435 and MMP_RS04440 are separated by 344 nucleotides
MMP_RS04425: MMP_RS04425 - APC family permease, at 841,312 to 842,565
_RS04425
MMP_RS04430: MMP_RS04430 - DUF1847 domain-containing protein, at 842,609 to 843,238
_RS04430
MMP_RS04435: MMP_RS04435 - pyridoxamine 5'-phosphate oxidase family protein, at 843,266 to 843,745
_RS04435
MMP_RS04440: MMP_RS04440 - nitrogenase iron protein, at 844,090 to 844,917
_RS04440
Position (kb) 843
844 Strain fitness (log2 ratio) -1
0
1 at 842.300 kb on - strand, within MMP_RS04425 at 842.311 kb on - strand, within MMP_RS04425 at 842.493 kb on + strand at 842.495 kb on - strand at 842.496 kb on + strand at 842.548 kb on + strand at 842.552 kb on + strand at 842.617 kb on - strand at 842.640 kb on - strand at 842.647 kb on - strand at 842.648 kb on + strand at 842.774 kb on + strand, within MMP_RS04430 at 842.879 kb on - strand, within MMP_RS04430 at 842.950 kb on - strand, within MMP_RS04430 at 842.951 kb on + strand, within MMP_RS04430 at 843.002 kb on - strand, within MMP_RS04430 at 843.011 kb on + strand, within MMP_RS04430 at 843.012 kb on - strand, within MMP_RS04430 at 843.038 kb on + strand, within MMP_RS04430 at 843.094 kb on - strand, within MMP_RS04430 at 843.095 kb on + strand, within MMP_RS04430 at 843.129 kb on + strand, within MMP_RS04430 at 843.302 kb on - strand at 843.386 kb on - strand, within MMP_RS04435 at 843.387 kb on + strand, within MMP_RS04435 at 843.402 kb on + strand, within MMP_RS04435 at 843.416 kb on + strand, within MMP_RS04435 at 843.419 kb on - strand, within MMP_RS04435 at 843.425 kb on - strand, within MMP_RS04435 at 843.426 kb on + strand, within MMP_RS04435 at 843.505 kb on + strand, within MMP_RS04435 at 843.623 kb on - strand, within MMP_RS04435 at 843.623 kb on - strand, within MMP_RS04435 at 843.629 kb on - strand, within MMP_RS04435 at 843.629 kb on - strand, within MMP_RS04435 at 843.630 kb on + strand, within MMP_RS04435 at 843.645 kb on - strand, within MMP_RS04435 at 843.645 kb on - strand, within MMP_RS04435 at 843.651 kb on - strand, within MMP_RS04435 at 843.663 kb on + strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.682 kb on - strand, within MMP_RS04435 at 843.701 kb on - strand at 843.708 kb on - strand at 843.708 kb on - strand at 843.779 kb on + strand at 843.781 kb on - strand at 843.781 kb on - strand at 843.782 kb on + strand at 843.803 kb on - strand at 843.803 kb on - strand at 843.804 kb on + strand at 843.808 kb on - strand at 843.812 kb on - strand at 843.816 kb on + strand at 843.822 kb on + strand at 843.822 kb on + strand at 843.824 kb on - strand at 843.824 kb on - strand at 843.824 kb on - strand at 843.825 kb on + strand at 843.845 kb on + strand at 843.845 kb on + strand at 843.932 kb on + strand at 843.997 kb on - strand at 843.998 kb on + strand at 843.998 kb on + strand at 843.998 kb on + strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.072 kb on - strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.073 kb on + strand at 844.074 kb on - strand at 844.074 kb on - strand at 844.074 kb on - strand at 844.075 kb on + strand at 844.075 kb on + strand at 844.076 kb on - strand at 844.076 kb on - strand at 844.076 kb on - strand at 844.077 kb on + strand at 844.077 kb on + strand at 844.112 kb on + strand at 844.225 kb on + strand, within MMP_RS04440 at 844.256 kb on - strand, within MMP_RS04440 at 844.256 kb on - strand, within MMP_RS04440 at 844.257 kb on + strand, within MMP_RS04440 at 844.269 kb on - strand, within MMP_RS04440 at 844.269 kb on - strand, within MMP_RS04440 at 844.300 kb on + strand, within MMP_RS04440 at 844.337 kb on - strand, within MMP_RS04440 at 844.337 kb on - strand, within MMP_RS04440 at 844.481 kb on - strand, within MMP_RS04440 at 844.532 kb on + strand, within MMP_RS04440 at 844.655 kb on - strand, within MMP_RS04440 at 844.673 kb on - strand, within MMP_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 842,300 - MMP_RS04425 0.79 +0.1 842,311 - MMP_RS04425 0.80 +0.2 842,493 + -0.1 842,495 - -0.3 842,496 + -0.4 842,548 + +0.0 842,552 + -0.7 842,617 - +0.0 842,640 - -0.1 842,647 - +0.1 842,648 + -0.1 842,774 + MMP_RS04430 0.26 +0.4 842,879 - MMP_RS04430 0.43 +0.2 842,950 - MMP_RS04430 0.54 +0.0 842,951 + MMP_RS04430 0.54 +0.6 843,002 - MMP_RS04430 0.62 -0.7 843,011 + MMP_RS04430 0.64 +1.5 843,012 - MMP_RS04430 0.64 -0.0 843,038 + MMP_RS04430 0.68 -0.0 843,094 - MMP_RS04430 0.77 -0.7 843,095 + MMP_RS04430 0.77 -0.1 843,129 + MMP_RS04430 0.83 +0.4 843,302 - -0.0 843,386 - MMP_RS04435 0.25 -0.2 843,387 + MMP_RS04435 0.25 -0.4 843,402 + MMP_RS04435 0.28 +0.5 843,416 + MMP_RS04435 0.31 -0.2 843,419 - MMP_RS04435 0.32 +0.4 843,425 - MMP_RS04435 0.33 -0.3 843,426 + MMP_RS04435 0.33 -0.2 843,505 + MMP_RS04435 0.50 +0.0 843,623 - MMP_RS04435 0.74 +0.2 843,623 - MMP_RS04435 0.74 -0.2 843,629 - MMP_RS04435 0.76 +0.1 843,629 - MMP_RS04435 0.76 +0.3 843,630 + MMP_RS04435 0.76 +0.5 843,645 - MMP_RS04435 0.79 +0.1 843,645 - MMP_RS04435 0.79 -0.0 843,651 - MMP_RS04435 0.80 +0.0 843,663 + MMP_RS04435 0.83 +0.5 843,682 - MMP_RS04435 0.87 +0.0 843,682 - MMP_RS04435 0.87 +0.1 843,682 - MMP_RS04435 0.87 +0.1 843,701 - -0.0 843,708 - -0.0 843,708 - -0.0 843,779 + -0.4 843,781 - -0.0 843,781 - +0.0 843,782 + +0.5 843,803 - +0.1 843,803 - +0.4 843,804 + -0.6 843,808 - +0.4 843,812 - +0.1 843,816 + +0.1 843,822 + +0.0 843,822 + +0.1 843,824 - -0.4 843,824 - -0.2 843,824 - +0.0 843,825 + -0.2 843,845 + +0.1 843,845 + -0.1 843,932 + -0.0 843,997 - +0.4 843,998 + -0.1 843,998 + +0.0 843,998 + +0.1 844,072 - +0.3 844,072 - +0.1 844,072 - +0.2 844,072 - +0.1 844,072 - +0.7 844,073 + +0.5 844,073 + +0.0 844,073 + +0.3 844,073 + -0.7 844,074 - -0.1 844,074 - +0.4 844,074 - -0.2 844,075 + -0.1 844,075 + -0.0 844,076 - -0.1 844,076 - -0.3 844,076 - -0.0 844,077 + +0.3 844,077 + +0.2 844,112 + +0.1 844,225 + MMP_RS04440 0.16 -0.1 844,256 - MMP_RS04440 0.20 -0.1 844,256 - MMP_RS04440 0.20 -0.3 844,257 + MMP_RS04440 0.20 -0.2 844,269 - MMP_RS04440 0.22 -0.2 844,269 - MMP_RS04440 0.22 +0.3 844,300 + MMP_RS04440 0.25 +0.1 844,337 - MMP_RS04440 0.30 +0.0 844,337 - MMP_RS04440 0.30 +0.5 844,481 - MMP_RS04440 0.47 +0.2 844,532 + MMP_RS04440 0.53 -0.0 844,655 - MMP_RS04440 0.68 +0.1 844,673 - MMP_RS04440 0.70 -0.2
Or see this region's nucleotide sequence