Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03745 and MMP_RS03750 are separated by 13 nucleotides MMP_RS03750 and MMP_RS03755 are separated by 12 nucleotides MMP_RS03755 and MMP_RS03760 are separated by 383 nucleotides
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302
_RS03750
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1 at 709.115 kb on + strand, within MMP_RS03745 at 709.123 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.265 kb on + strand, within MMP_RS03745 at 709.413 kb on + strand, within MMP_RS03745 at 709.416 kb on - strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.640 kb on - strand, within MMP_RS03745 at 709.657 kb on + strand, within MMP_RS03745 at 709.796 kb on - strand at 709.797 kb on + strand at 709.927 kb on + strand, within MMP_RS03750 at 710.010 kb on - strand, within MMP_RS03750 at 710.091 kb on - strand, within MMP_RS03750 at 710.159 kb on + strand, within MMP_RS03750 at 710.172 kb on + strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.176 kb on + strand, within MMP_RS03750 at 710.248 kb on + strand, within MMP_RS03750 at 710.301 kb on + strand at 710.326 kb on - strand at 710.375 kb on + strand, within MMP_RS03755 at 710.415 kb on + strand, within MMP_RS03755 at 710.478 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.503 kb on + strand, within MMP_RS03755 at 710.524 kb on - strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.616 kb on + strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.653 kb on - strand, within MMP_RS03755 at 710.750 kb on + strand, within MMP_RS03755 at 710.767 kb on - strand, within MMP_RS03755 at 710.783 kb on - strand, within MMP_RS03755 at 710.784 kb on + strand, within MMP_RS03755 at 710.818 kb on + strand at 710.831 kb on - strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.875 kb on - strand at 710.875 kb on - strand at 710.942 kb on + strand at 711.055 kb on - strand at 711.055 kb on - strand at 711.082 kb on - strand at 711.086 kb on + strand at 711.088 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.094 kb on - strand at 711.202 kb on - strand at 711.202 kb on - strand at 711.205 kb on + strand at 711.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 709,115 + MMP_RS03745 0.42 +0.2 709,123 - MMP_RS03745 0.43 -0.2 709,262 - MMP_RS03745 0.54 -0.1 709,262 - MMP_RS03745 0.54 -0.3 709,265 + MMP_RS03745 0.54 -0.2 709,413 + MMP_RS03745 0.65 +0.1 709,416 - MMP_RS03745 0.66 -0.5 709,417 + MMP_RS03745 0.66 +0.2 709,417 + MMP_RS03745 0.66 +0.1 709,640 - MMP_RS03745 0.83 +0.2 709,657 + MMP_RS03745 0.84 +0.6 709,796 - -0.1 709,797 + +0.3 709,927 + MMP_RS03750 0.12 -0.1 710,010 - MMP_RS03750 0.31 +0.3 710,091 - MMP_RS03750 0.50 -0.2 710,159 + MMP_RS03750 0.66 +0.2 710,172 + MMP_RS03750 0.69 +0.1 710,175 - MMP_RS03750 0.70 -0.7 710,175 - MMP_RS03750 0.70 -0.2 710,176 + MMP_RS03750 0.70 +0.2 710,248 + MMP_RS03750 0.87 -0.1 710,301 + +0.0 710,326 - -0.1 710,375 + MMP_RS03755 0.11 +0.3 710,415 + MMP_RS03755 0.19 +1.0 710,478 + MMP_RS03755 0.30 +0.3 710,483 + MMP_RS03755 0.31 +0.0 710,483 + MMP_RS03755 0.31 +1.3 710,502 - MMP_RS03755 0.35 -0.4 710,502 - MMP_RS03755 0.35 +0.2 710,503 + MMP_RS03755 0.35 -0.0 710,524 - MMP_RS03755 0.39 +0.1 710,525 + MMP_RS03755 0.39 -0.1 710,525 + MMP_RS03755 0.39 +0.5 710,525 + MMP_RS03755 0.39 -0.0 710,616 + MMP_RS03755 0.56 +0.6 710,636 - MMP_RS03755 0.60 +0.2 710,636 - MMP_RS03755 0.60 -0.1 710,637 + MMP_RS03755 0.60 -0.8 710,637 + MMP_RS03755 0.60 +0.2 710,643 - MMP_RS03755 0.61 +0.2 710,643 - MMP_RS03755 0.61 -0.3 710,643 - MMP_RS03755 0.61 -0.2 710,643 - MMP_RS03755 0.61 -0.0 710,644 + MMP_RS03755 0.61 +0.3 710,644 + MMP_RS03755 0.61 -0.4 710,653 - MMP_RS03755 0.63 -0.1 710,750 + MMP_RS03755 0.81 +0.0 710,767 - MMP_RS03755 0.84 -0.1 710,783 - MMP_RS03755 0.87 -0.3 710,784 + MMP_RS03755 0.87 -0.1 710,818 + +0.1 710,831 - -0.4 710,832 + +0.5 710,832 + -0.1 710,832 + +0.6 710,875 - +0.0 710,875 - +0.0 710,942 + -0.2 711,055 - +0.1 711,055 - -0.4 711,082 - -0.5 711,086 + -0.4 711,088 - -0.4 711,092 - -0.1 711,092 - -0.3 711,092 - +0.3 711,094 - +0.2 711,202 - -0.1 711,202 - +0.3 711,205 + +0.1 711,255 + -0.2
Or see this region's nucleotide sequence