Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03530 and MMP_RS03535 are separated by 241 nucleotides MMP_RS03535 and MMP_RS03540 are separated by 10 nucleotides MMP_RS03540 and MMP_RS03545 are separated by 136 nucleotides MMP_RS03545 and MMP_RS03550 are separated by 95 nucleotides MMP_RS03550 and MMP_RS03555 are separated by 122 nucleotides
MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571
_RS03530
MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016
_RS03535
MMP_RS03540: MMP_RS03540 - DUF2178 domain-containing protein, at 663,027 to 663,413
_RS03540
MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947
_RS03545
MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519
_RS03550
MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622
_RS03555
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 662.558 kb on + strand at 662.573 kb on - strand at 662.592 kb on + strand at 662.600 kb on + strand at 662.629 kb on - strand at 662.802 kb on - strand at 662.803 kb on + strand at 662.824 kb on - strand at 662.833 kb on + strand at 662.840 kb on - strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 662.841 kb on + strand, within MMP_RS03535 at 663.020 kb on - strand at 663.029 kb on + strand at 663.050 kb on - strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.059 kb on + strand at 663.062 kb on - strand at 663.125 kb on - strand, within MMP_RS03540 at 663.272 kb on - strand, within MMP_RS03540 at 663.300 kb on - strand, within MMP_RS03540 at 663.302 kb on - strand, within MMP_RS03540 at 663.303 kb on + strand, within MMP_RS03540 at 663.306 kb on - strand, within MMP_RS03540 at 663.309 kb on - strand, within MMP_RS03540 at 663.310 kb on + strand, within MMP_RS03540 at 663.323 kb on + strand, within MMP_RS03540 at 663.370 kb on + strand, within MMP_RS03540 at 663.523 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.573 kb on - strand at 663.576 kb on + strand at 663.906 kb on - strand, within MMP_RS03545 at 663.994 kb on + strand, within MMP_RS03545 at 664.021 kb on - strand, within MMP_RS03545 at 664.239 kb on - strand, within MMP_RS03545 at 664.295 kb on + strand, within MMP_RS03545 at 664.297 kb on - strand, within MMP_RS03545 at 664.552 kb on - strand, within MMP_RS03545 at 664.579 kb on - strand, within MMP_RS03545 at 664.683 kb on + strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.726 kb on - strand, within MMP_RS03545 at 664.728 kb on - strand, within MMP_RS03545 at 664.751 kb on - strand, within MMP_RS03545 at 664.752 kb on + strand, within MMP_RS03545 at 664.809 kb on - strand at 664.855 kb on - strand at 664.859 kb on + strand at 664.942 kb on - strand at 664.953 kb on - strand at 664.982 kb on + strand at 664.984 kb on - strand at 665.278 kb on + strand, within MMP_RS03550 at 665.353 kb on - strand, within MMP_RS03550 at 665.478 kb on - strand at 665.546 kb on + strand at 665.552 kb on - strand at 665.552 kb on - strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.553 kb on + strand at 665.556 kb on + strand at 665.556 kb on + strand at 665.578 kb on + strand at 665.754 kb on - strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.788 kb on - strand, within MMP_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 662,558 + -0.6 662,573 - +0.1 662,592 + -0.0 662,600 + +0.2 662,629 - +0.4 662,802 - +0.0 662,803 + -1.1 662,824 - -0.3 662,833 + -0.2 662,840 - MMP_RS03535 0.13 +0.3 662,841 + MMP_RS03535 0.14 +0.2 662,841 + MMP_RS03535 0.14 +0.5 663,020 - -0.1 663,029 + +0.2 663,050 - -0.1 663,059 + -0.3 663,059 + -0.1 663,059 + +0.5 663,062 - +0.2 663,125 - MMP_RS03540 0.25 +0.1 663,272 - MMP_RS03540 0.63 -0.2 663,300 - MMP_RS03540 0.71 +0.3 663,302 - MMP_RS03540 0.71 -0.3 663,303 + MMP_RS03540 0.71 +0.1 663,306 - MMP_RS03540 0.72 -0.1 663,309 - MMP_RS03540 0.73 -0.5 663,310 + MMP_RS03540 0.73 +0.0 663,323 + MMP_RS03540 0.76 -0.4 663,370 + MMP_RS03540 0.89 +0.7 663,523 - -0.1 663,573 - -0.1 663,573 - -0.3 663,573 - +0.1 663,573 - +0.9 663,576 + +0.1 663,906 - MMP_RS03545 0.25 +0.2 663,994 + MMP_RS03545 0.32 +1.3 664,021 - MMP_RS03545 0.34 +0.1 664,239 - MMP_RS03545 0.49 -0.2 664,295 + MMP_RS03545 0.53 +0.2 664,297 - MMP_RS03545 0.53 +0.2 664,552 - MMP_RS03545 0.72 -0.1 664,579 - MMP_RS03545 0.74 +0.4 664,683 + MMP_RS03545 0.81 +0.1 664,726 - MMP_RS03545 0.84 +0.4 664,726 - MMP_RS03545 0.84 +0.1 664,726 - MMP_RS03545 0.84 +0.2 664,728 - MMP_RS03545 0.84 -0.3 664,751 - MMP_RS03545 0.86 -0.3 664,752 + MMP_RS03545 0.86 +0.1 664,809 - +0.2 664,855 - +0.1 664,859 + -0.1 664,942 - +0.2 664,953 - +1.0 664,982 + -0.4 664,984 - +0.2 665,278 + MMP_RS03550 0.49 -0.3 665,353 - MMP_RS03550 0.65 +0.1 665,478 - +0.1 665,546 + +0.2 665,552 - +0.2 665,552 - +0.4 665,553 + -0.3 665,553 + -0.2 665,553 + -0.1 665,556 + +0.2 665,556 + +0.0 665,578 + -2.7 665,754 - MMP_RS03555 0.11 -0.5 665,785 + MMP_RS03555 0.15 -1.0 665,785 + MMP_RS03555 0.15 -0.5 665,788 - MMP_RS03555 0.15 -0.9
Or see this region's nucleotide sequence