Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03110

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03105 and MMP_RS03110 are separated by 4 nucleotidesMMP_RS03110 and MMP_RS03115 are separated by 36 nucleotidesMMP_RS03115 and MMP_RS03120 are separated by 10 nucleotidesMMP_RS03120 and MMP_RS03125 overlap by 4 nucleotides MMP_RS03105: MMP_RS03105 - radical SAM protein, at 585,799 to 587,331 _RS03105 MMP_RS03110: MMP_RS03110 - glycosyltransferase family 2 protein, at 587,336 to 588,031 _RS03110 MMP_RS03115: MMP_RS03115 - hypothetical protein, at 588,068 to 588,727 _RS03115 MMP_RS03120: MMP_RS03120 - hypothetical protein, at 588,738 to 588,920 _RS03120 MMP_RS03125: MMP_RS03125 - cell division ATPase MinD, at 588,917 to 589,702 _RS03125 Position (kb) 587 588 589Strain fitness (log2 ratio) -1 0 1at 586.345 kb on + strand, within MMP_RS03105at 586.378 kb on + strand, within MMP_RS03105at 586.389 kb on - strand, within MMP_RS03105at 586.797 kb on + strand, within MMP_RS03105at 586.956 kb on + strand, within MMP_RS03105at 586.964 kb on - strand, within MMP_RS03105at 586.964 kb on - strand, within MMP_RS03105at 586.965 kb on + strand, within MMP_RS03105at 586.982 kb on - strand, within MMP_RS03105at 586.999 kb on + strand, within MMP_RS03105at 587.000 kb on - strand, within MMP_RS03105at 587.001 kb on + strand, within MMP_RS03105at 587.009 kb on - strand, within MMP_RS03105at 587.009 kb on - strand, within MMP_RS03105at 587.009 kb on - strand, within MMP_RS03105at 587.031 kb on - strand, within MMP_RS03105at 587.033 kb on - strand, within MMP_RS03105at 587.040 kb on - strand, within MMP_RS03105at 587.111 kb on - strand, within MMP_RS03105at 587.157 kb on + strand, within MMP_RS03105at 587.228 kb on - strandat 587.349 kb on + strandat 587.352 kb on + strandat 587.352 kb on + strandat 587.352 kb on + strandat 587.396 kb on + strandat 587.398 kb on - strandat 587.398 kb on - strandat 587.399 kb on + strandat 587.403 kb on - strandat 587.404 kb on + strandat 587.425 kb on + strand, within MMP_RS03110at 587.435 kb on - strand, within MMP_RS03110at 587.440 kb on + strand, within MMP_RS03110at 587.487 kb on + strand, within MMP_RS03110at 587.551 kb on - strand, within MMP_RS03110at 587.573 kb on + strand, within MMP_RS03110at 587.662 kb on - strand, within MMP_RS03110at 587.662 kb on - strand, within MMP_RS03110at 587.663 kb on + strand, within MMP_RS03110at 587.732 kb on + strand, within MMP_RS03110at 587.803 kb on + strand, within MMP_RS03110at 587.864 kb on - strand, within MMP_RS03110at 587.920 kb on - strand, within MMP_RS03110at 587.939 kb on - strand, within MMP_RS03110at 587.961 kb on + strand, within MMP_RS03110at 588.047 kb on + strandat 588.065 kb on + strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.101 kb on - strandat 588.102 kb on + strandat 588.102 kb on + strandat 588.104 kb on - strandat 588.106 kb on - strandat 588.107 kb on + strandat 588.110 kb on - strandat 588.111 kb on + strandat 588.116 kb on - strandat 588.128 kb on - strandat 588.128 kb on - strandat 588.128 kb on - strandat 588.129 kb on + strandat 588.130 kb on - strandat 588.130 kb on - strandat 588.130 kb on - strandat 588.131 kb on + strandat 588.131 kb on + strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.132 kb on - strandat 588.133 kb on + strandat 588.133 kb on + strandat 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.135 kb on - strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.136 kb on + strand, within MMP_RS03115at 588.137 kb on - strand, within MMP_RS03115at 588.137 kb on - strand, within MMP_RS03115at 588.138 kb on + strand, within MMP_RS03115at 588.139 kb on - strand, within MMP_RS03115at 588.140 kb on + strand, within MMP_RS03115at 588.202 kb on - strand, within MMP_RS03115at 588.203 kb on + strand, within MMP_RS03115at 588.209 kb on + strand, within MMP_RS03115at 588.220 kb on - strand, within MMP_RS03115at 588.225 kb on + strand, within MMP_RS03115at 588.253 kb on - strand, within MMP_RS03115at 588.253 kb on - strand, within MMP_RS03115at 588.254 kb on + strand, within MMP_RS03115at 588.272 kb on + strand, within MMP_RS03115at 588.289 kb on - strand, within MMP_RS03115at 588.290 kb on + strand, within MMP_RS03115at 588.341 kb on + strand, within MMP_RS03115at 588.344 kb on - strand, within MMP_RS03115at 588.493 kb on - strand, within MMP_RS03115at 588.498 kb on + strand, within MMP_RS03115at 588.498 kb on + strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.524 kb on - strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.525 kb on + strand, within MMP_RS03115at 588.538 kb on + strand, within MMP_RS03115at 588.554 kb on + strand, within MMP_RS03115at 588.581 kb on + strand, within MMP_RS03115at 588.689 kb on - strandat 588.712 kb on + strandat 588.717 kb on + strandat 588.727 kb on - strandat 588.728 kb on + strandat 588.880 kb on + strand, within MMP_RS03120at 588.880 kb on + strand, within MMP_RS03120at 588.888 kb on - strand, within MMP_RS03120at 588.891 kb on - strand, within MMP_RS03120at 588.938 kb on - strandat 588.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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586,345 + MMP_RS03105 0.36 -0.7
586,378 + MMP_RS03105 0.38 -0.0
586,389 - MMP_RS03105 0.38 -0.1
586,797 + MMP_RS03105 0.65 -0.1
586,956 + MMP_RS03105 0.75 -0.5
586,964 - MMP_RS03105 0.76 -0.1
586,964 - MMP_RS03105 0.76 -1.1
586,965 + MMP_RS03105 0.76 +0.0
586,982 - MMP_RS03105 0.77 -0.5
586,999 + MMP_RS03105 0.78 -0.3
587,000 - MMP_RS03105 0.78 +0.9
587,001 + MMP_RS03105 0.78 -0.7
587,009 - MMP_RS03105 0.79 +0.3
587,009 - MMP_RS03105 0.79 -0.3
587,009 - MMP_RS03105 0.79 -0.1
587,031 - MMP_RS03105 0.80 -0.3
587,033 - MMP_RS03105 0.80 -0.2
587,040 - MMP_RS03105 0.81 -0.5
587,111 - MMP_RS03105 0.86 -0.2
587,157 + MMP_RS03105 0.89 -0.3
587,228 - -0.6
587,349 + +0.5
587,352 + -0.3
587,352 + +0.1
587,352 + +0.3
587,396 + +0.4
587,398 - -0.2
587,398 - +0.3
587,399 + +0.1
587,403 - +0.2
587,404 + -0.3
587,425 + MMP_RS03110 0.13 +0.3
587,435 - MMP_RS03110 0.14 -0.0
587,440 + MMP_RS03110 0.15 +0.5
587,487 + MMP_RS03110 0.22 -0.1
587,551 - MMP_RS03110 0.31 +0.5
587,573 + MMP_RS03110 0.34 +1.0
587,662 - MMP_RS03110 0.47 +0.4
587,662 - MMP_RS03110 0.47 +1.0
587,663 + MMP_RS03110 0.47 +0.1
587,732 + MMP_RS03110 0.57 +0.2
587,803 + MMP_RS03110 0.67 -0.5
587,864 - MMP_RS03110 0.76 -0.9
587,920 - MMP_RS03110 0.84 -0.7
587,939 - MMP_RS03110 0.87 +1.1
587,961 + MMP_RS03110 0.90 -0.8
588,047 + +0.2
588,065 + +0.2
588,101 - +0.6
588,101 - +0.1
588,101 - +0.7
588,101 - +0.6
588,102 + +0.0
588,102 + +1.4
588,104 - +0.9
588,106 - +1.0
588,107 + +0.5
588,110 - +0.1
588,111 + +0.3
588,116 - -0.1
588,128 - +0.6
588,128 - +0.5
588,128 - +0.1
588,129 + +0.5
588,130 - +0.1
588,130 - +0.2
588,130 - +0.8
588,131 + +0.6
588,131 + +0.0
588,132 - -0.1
588,132 - -0.2
588,132 - -0.1
588,132 - +0.0
588,132 - +0.2
588,132 - +0.7
588,132 - -0.6
588,132 - -0.1
588,132 - -0.7
588,132 - -0.1
588,132 - +0.3
588,133 + +0.4
588,133 + -0.4
588,135 - MMP_RS03115 0.10 +0.7
588,135 - MMP_RS03115 0.10 -0.2
588,135 - MMP_RS03115 0.10 +0.0
588,135 - MMP_RS03115 0.10 +0.7
588,135 - MMP_RS03115 0.10 +0.2
588,135 - MMP_RS03115 0.10 +0.9
588,135 - MMP_RS03115 0.10 +0.4
588,135 - MMP_RS03115 0.10 +0.7
588,136 + MMP_RS03115 0.10 +0.9
588,136 + MMP_RS03115 0.10 +0.4
588,136 + MMP_RS03115 0.10 +0.3
588,136 + MMP_RS03115 0.10 +0.1
588,136 + MMP_RS03115 0.10 +0.6
588,136 + MMP_RS03115 0.10 -0.0
588,136 + MMP_RS03115 0.10 +0.6
588,136 + MMP_RS03115 0.10 +0.8
588,137 - MMP_RS03115 0.10 +0.3
588,137 - MMP_RS03115 0.10 +0.2
588,138 + MMP_RS03115 0.11 +0.2
588,139 - MMP_RS03115 0.11 +0.7
588,140 + MMP_RS03115 0.11 +1.0
588,202 - MMP_RS03115 0.20 +0.9
588,203 + MMP_RS03115 0.20 +0.3
588,209 + MMP_RS03115 0.21 -0.1
588,220 - MMP_RS03115 0.23 +0.5
588,225 + MMP_RS03115 0.24 +0.3
588,253 - MMP_RS03115 0.28 +0.3
588,253 - MMP_RS03115 0.28 -0.4
588,254 + MMP_RS03115 0.28 +0.4
588,272 + MMP_RS03115 0.31 +0.2
588,289 - MMP_RS03115 0.33 +0.4
588,290 + MMP_RS03115 0.34 -0.0
588,341 + MMP_RS03115 0.41 +0.1
588,344 - MMP_RS03115 0.42 -0.0
588,493 - MMP_RS03115 0.64 +0.4
588,498 + MMP_RS03115 0.65 +0.1
588,498 + MMP_RS03115 0.65 +0.1
588,524 - MMP_RS03115 0.69 +0.2
588,524 - MMP_RS03115 0.69 +0.1
588,524 - MMP_RS03115 0.69 -0.0
588,525 + MMP_RS03115 0.69 +0.1
588,525 + MMP_RS03115 0.69 +0.1
588,525 + MMP_RS03115 0.69 +0.2
588,538 + MMP_RS03115 0.71 -1.0
588,554 + MMP_RS03115 0.74 +0.2
588,581 + MMP_RS03115 0.78 -0.2
588,689 - -0.0
588,712 + -0.1
588,717 + -0.3
588,727 - +0.3
588,728 + +0.1
588,880 + MMP_RS03120 0.78 -0.2
588,880 + MMP_RS03120 0.78 -0.6
588,888 - MMP_RS03120 0.82 -0.1
588,891 - MMP_RS03120 0.84 -0.1
588,938 - +0.3
588,993 - -0.0

Or see this region's nucleotide sequence