Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02905 and MMP_RS02910 are separated by 170 nucleotides MMP_RS02910 and MMP_RS02915 are separated by 34 nucleotides MMP_RS02915 and MMP_RS02920 are separated by 77 nucleotides MMP_RS02920 and MMP_RS02925 are separated by 21 nucleotides
MMP_RS02905: MMP_RS02905 - 2-thiouracil desulfurase family protein, at 553,444 to 553,992
_RS02905
MMP_RS02910: MMP_RS02910 - ABC transporter substrate-binding protein, at 554,163 to 554,957
_RS02910
MMP_RS02915: MMP_RS02915 - amino acid ABC transporter permease, at 554,992 to 555,651
_RS02915
MMP_RS02920: MMP_RS02920 - DMT family transporter, at 555,729 to 556,619
_RS02920
MMP_RS02925: MMP_RS02925 - ornithine carbamoyltransferase, at 556,641 to 557,555
_RS02925
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1 at 554.018 kb on - strand at 554.055 kb on - strand at 554.066 kb on - strand at 554.118 kb on - strand at 554.171 kb on - strand at 554.252 kb on - strand, within MMP_RS02910 at 554.294 kb on + strand, within MMP_RS02910 at 554.472 kb on - strand, within MMP_RS02910 at 554.678 kb on + strand, within MMP_RS02910 at 554.700 kb on - strand, within MMP_RS02910 at 554.766 kb on - strand, within MMP_RS02910 at 555.152 kb on - strand, within MMP_RS02915 at 555.164 kb on - strand, within MMP_RS02915 at 555.211 kb on - strand, within MMP_RS02915 at 555.423 kb on - strand, within MMP_RS02915 at 555.683 kb on - strand at 555.684 kb on + strand at 555.699 kb on - strand at 555.993 kb on - strand, within MMP_RS02920 at 555.995 kb on - strand, within MMP_RS02920 at 555.999 kb on - strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.134 kb on - strand, within MMP_RS02920 at 556.204 kb on - strand, within MMP_RS02920 at 556.204 kb on - strand, within MMP_RS02920 at 556.218 kb on - strand, within MMP_RS02920 at 556.219 kb on + strand, within MMP_RS02920 at 556.245 kb on - strand, within MMP_RS02920 at 556.263 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.272 kb on + strand, within MMP_RS02920 at 556.272 kb on + strand, within MMP_RS02920 at 556.273 kb on - strand, within MMP_RS02920 at 556.273 kb on - strand, within MMP_RS02920 at 556.274 kb on + strand, within MMP_RS02920 at 556.278 kb on - strand, within MMP_RS02920 at 556.342 kb on - strand, within MMP_RS02920 at 556.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 554,018 - +0.1 554,055 - -0.3 554,066 - +0.1 554,118 - +0.4 554,171 - -2.0 554,252 - MMP_RS02910 0.11 +0.3 554,294 + MMP_RS02910 0.16 -0.3 554,472 - MMP_RS02910 0.39 +0.0 554,678 + MMP_RS02910 0.65 +0.4 554,700 - MMP_RS02910 0.68 -0.2 554,766 - MMP_RS02910 0.76 +0.4 555,152 - MMP_RS02915 0.24 +0.0 555,164 - MMP_RS02915 0.26 -0.1 555,211 - MMP_RS02915 0.33 +0.3 555,423 - MMP_RS02915 0.65 +0.5 555,683 - +0.4 555,684 + +0.2 555,699 - +0.1 555,993 - MMP_RS02920 0.30 -0.3 555,995 - MMP_RS02920 0.30 +0.3 555,999 - MMP_RS02920 0.30 -0.1 556,000 + MMP_RS02920 0.30 +0.1 556,000 + MMP_RS02920 0.30 -0.1 556,000 + MMP_RS02920 0.30 -0.4 556,134 - MMP_RS02920 0.45 +0.1 556,204 - MMP_RS02920 0.53 -0.1 556,204 - MMP_RS02920 0.53 +0.3 556,218 - MMP_RS02920 0.55 +0.1 556,219 + MMP_RS02920 0.55 -0.0 556,245 - MMP_RS02920 0.58 +0.0 556,263 - MMP_RS02920 0.60 +0.0 556,267 - MMP_RS02920 0.60 +0.2 556,267 - MMP_RS02920 0.60 +1.4 556,267 - MMP_RS02920 0.60 -0.0 556,267 - MMP_RS02920 0.60 +0.7 556,272 + MMP_RS02920 0.61 -0.2 556,272 + MMP_RS02920 0.61 +0.1 556,273 - MMP_RS02920 0.61 -0.6 556,273 - MMP_RS02920 0.61 +0.1 556,274 + MMP_RS02920 0.61 -0.1 556,278 - MMP_RS02920 0.62 +0.2 556,342 - MMP_RS02920 0.69 -0.1 556,605 + +0.2
Or see this region's nucleotide sequence