Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02780 and MMP_RS02785 are separated by 13 nucleotides MMP_RS02785 and MMP_RS02790 are separated by 1 nucleotides MMP_RS02790 and MMP_RS02795 are separated by 424 nucleotides
MMP_RS02780: MMP_RS02780 - hypothetical protein, at 531,638 to 532,351
_RS02780
MMP_RS02785: MMP_RS02785 - MarR family transcriptional regulator, at 532,365 to 532,985
_RS02785
MMP_RS02790: MMP_RS02790 - class III signal peptide-containing protein, at 532,987 to 533,208
_RS02790
MMP_RS02795: MMP_RS02795 - sulfate permease, at 533,633 to 535,291
_RS02795
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.445 kb on - strand at 531.463 kb on + strand at 531.465 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.526 kb on - strand at 531.527 kb on + strand at 531.529 kb on + strand at 531.529 kb on + strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.532 kb on + strand at 531.584 kb on - strand at 531.591 kb on + strand at 531.604 kb on - strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.613 kb on - strand at 531.623 kb on + strand at 531.733 kb on - strand, within MMP_RS02780 at 531.736 kb on + strand, within MMP_RS02780 at 531.912 kb on - strand, within MMP_RS02780 at 531.978 kb on - strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.979 kb on + strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.981 kb on - strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.982 kb on + strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.983 kb on - strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.984 kb on + strand, within MMP_RS02780 at 531.987 kb on - strand, within MMP_RS02780 at 531.988 kb on + strand, within MMP_RS02780 at 531.993 kb on - strand, within MMP_RS02780 at 532.009 kb on - strand, within MMP_RS02780 at 532.049 kb on + strand, within MMP_RS02780 at 532.086 kb on + strand, within MMP_RS02780 at 532.174 kb on - strand, within MMP_RS02780 at 532.190 kb on - strand, within MMP_RS02780 at 532.191 kb on + strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.195 kb on - strand, within MMP_RS02780 at 532.196 kb on + strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.197 kb on - strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.198 kb on + strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.201 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.250 kb on - strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.251 kb on + strand, within MMP_RS02780 at 532.286 kb on + strand at 532.286 kb on + strand at 532.289 kb on - strand at 532.345 kb on + strand at 532.349 kb on - strand at 532.384 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.392 kb on - strand at 532.393 kb on + strand at 532.393 kb on + strand at 532.394 kb on - strand at 532.403 kb on + strand at 532.420 kb on - strand at 532.486 kb on + strand, within MMP_RS02785 at 532.508 kb on + strand, within MMP_RS02785 at 532.510 kb on + strand, within MMP_RS02785 at 532.519 kb on + strand, within MMP_RS02785 at 532.541 kb on + strand, within MMP_RS02785 at 532.556 kb on + strand, within MMP_RS02785 at 532.573 kb on - strand, within MMP_RS02785 at 532.616 kb on - strand, within MMP_RS02785 at 532.828 kb on - strand, within MMP_RS02785 at 532.906 kb on - strand, within MMP_RS02785 at 532.922 kb on - strand, within MMP_RS02785 at 532.942 kb on + strand at 532.954 kb on - strand at 532.982 kb on + strand at 532.983 kb on - strand at 533.038 kb on - strand, within MMP_RS02790 at 533.225 kb on - strand at 533.248 kb on - strand at 533.249 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.272 kb on - strand at 533.273 kb on + strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.275 kb on + strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.276 kb on - strand at 533.277 kb on + strand at 533.277 kb on + strand at 533.303 kb on - strand at 533.303 kb on - strand at 533.324 kb on - strand at 533.500 kb on - strand at 533.560 kb on + strand at 533.598 kb on - strand at 533.598 kb on - strand at 533.599 kb on + strand at 533.616 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.634 kb on - strand at 533.708 kb on + strand at 533.932 kb on - strand, within MMP_RS02795 at 533.933 kb on + strand, within MMP_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 531,445 - -0.1 531,463 + +0.0 531,465 + +0.2 531,525 + -0.0 531,525 + +0.1 531,525 + -0.3 531,526 - +0.5 531,527 + +0.1 531,529 + -0.2 531,529 + -0.1 531,531 - -0.7 531,531 - +0.3 531,531 - +0.5 531,532 + +0.2 531,584 - +0.3 531,591 + +0.4 531,604 - +0.4 531,605 + +0.5 531,605 + +1.2 531,605 + +0.1 531,605 + +0.2 531,613 - +0.1 531,623 + -0.0 531,733 - MMP_RS02780 0.13 +0.4 531,736 + MMP_RS02780 0.14 -0.2 531,912 - MMP_RS02780 0.38 -0.2 531,978 - MMP_RS02780 0.48 +0.1 531,979 + MMP_RS02780 0.48 +0.4 531,979 + MMP_RS02780 0.48 +0.5 531,981 - MMP_RS02780 0.48 +0.3 531,981 - MMP_RS02780 0.48 -0.1 531,982 + MMP_RS02780 0.48 -0.5 531,982 + MMP_RS02780 0.48 +0.1 531,983 - MMP_RS02780 0.48 -0.1 531,983 - MMP_RS02780 0.48 +0.4 531,983 - MMP_RS02780 0.48 +0.8 531,983 - MMP_RS02780 0.48 +0.4 531,984 + MMP_RS02780 0.48 +0.1 531,984 + MMP_RS02780 0.48 -0.4 531,987 - MMP_RS02780 0.49 +0.0 531,988 + MMP_RS02780 0.49 -0.1 531,993 - MMP_RS02780 0.50 -0.2 532,009 - MMP_RS02780 0.52 +0.3 532,049 + MMP_RS02780 0.58 -0.3 532,086 + MMP_RS02780 0.63 +0.6 532,174 - MMP_RS02780 0.75 +0.2 532,190 - MMP_RS02780 0.77 +0.1 532,191 + MMP_RS02780 0.77 -0.2 532,195 - MMP_RS02780 0.78 +1.2 532,195 - MMP_RS02780 0.78 -2.8 532,196 + MMP_RS02780 0.78 +0.4 532,197 - MMP_RS02780 0.78 -0.0 532,197 - MMP_RS02780 0.78 +0.1 532,197 - MMP_RS02780 0.78 -0.2 532,198 + MMP_RS02780 0.78 +0.3 532,198 + MMP_RS02780 0.78 +1.0 532,198 + MMP_RS02780 0.78 +0.0 532,201 - MMP_RS02780 0.79 -0.0 532,201 - MMP_RS02780 0.79 +0.0 532,250 - MMP_RS02780 0.86 -0.7 532,250 - MMP_RS02780 0.86 +0.7 532,251 + MMP_RS02780 0.86 +0.2 532,251 + MMP_RS02780 0.86 -0.2 532,286 + +0.3 532,286 + +0.2 532,289 - +0.2 532,345 + +0.6 532,349 - +0.0 532,384 - -0.1 532,392 - +0.2 532,392 - +0.8 532,392 - +0.0 532,392 - -0.2 532,393 + +0.1 532,393 + -0.2 532,394 - +0.5 532,403 + -0.6 532,420 - -0.2 532,486 + MMP_RS02785 0.19 -0.1 532,508 + MMP_RS02785 0.23 -0.1 532,510 + MMP_RS02785 0.23 -0.1 532,519 + MMP_RS02785 0.25 +0.1 532,541 + MMP_RS02785 0.28 -0.1 532,556 + MMP_RS02785 0.31 +0.1 532,573 - MMP_RS02785 0.33 -0.3 532,616 - MMP_RS02785 0.40 -0.4 532,828 - MMP_RS02785 0.75 +0.2 532,906 - MMP_RS02785 0.87 -0.0 532,922 - MMP_RS02785 0.90 -0.1 532,942 + +0.3 532,954 - +2.1 532,982 + +0.1 532,983 - -0.3 533,038 - MMP_RS02790 0.23 -0.0 533,225 - +0.1 533,248 - +0.1 533,249 + +0.7 533,253 + -0.1 533,253 + +0.1 533,253 + +0.0 533,272 - +0.0 533,273 + +0.2 533,274 - +0.2 533,274 - +0.2 533,274 - +0.0 533,274 - +0.1 533,274 - +0.2 533,274 - -0.1 533,275 + +0.0 533,275 + -0.6 533,275 + +0.2 533,275 + +0.1 533,275 + -0.5 533,275 + -1.3 533,275 + -0.1 533,276 - +0.4 533,276 - -0.6 533,276 - +0.7 533,276 - +0.2 533,276 - +0.1 533,276 - +0.1 533,277 + -0.0 533,277 + +0.1 533,303 - +0.3 533,303 - +0.3 533,324 - +0.2 533,500 - +0.1 533,560 + +0.5 533,598 - +0.4 533,598 - +0.5 533,599 + -0.1 533,616 - +0.0 533,634 - -0.3 533,634 - +0.1 533,634 - +0.3 533,708 + -0.3 533,932 - MMP_RS02795 0.18 -0.2 533,933 + MMP_RS02795 0.18 -0.4
Or see this region's nucleotide sequence