Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02595 and MMP_RS02600 are separated by 302 nucleotides MMP_RS02600 and MMP_RS02605 overlap by 7 nucleotides MMP_RS02605 and MMP_RS02610 overlap by 1 nucleotides
MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886
_RS02595
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162
_RS02605
MMP_RS02610: MMP_RS02610 - DUF2162 domain-containing protein, at 488,162 to 488,881
_RS02610
Position (kb) 487
488
489 Strain fitness (log2 ratio) -1
0
1 at 486.712 kb on - strand, within MMP_RS02595 at 486.886 kb on - strand at 486.890 kb on - strand at 486.929 kb on - strand at 486.934 kb on - strand at 486.937 kb on - strand at 486.937 kb on - strand at 486.938 kb on + strand at 486.981 kb on + strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 487.065 kb on - strand at 487.066 kb on + strand at 487.072 kb on - strand at 487.073 kb on + strand at 487.073 kb on + strand at 487.083 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.091 kb on + strand at 487.094 kb on - strand at 487.094 kb on - strand at 487.095 kb on + strand at 487.209 kb on - strand at 487.979 kb on - strand, within MMP_RS02605 at 488.214 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.278 kb on + strand, within MMP_RS02610 at 488.660 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.769 kb on + strand, within MMP_RS02610 at 488.921 kb on + strand at 489.039 kb on - strand at 489.095 kb on - strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.118 kb on + strand at 489.119 kb on - strand at 489.120 kb on + strand at 489.121 kb on - strand at 489.136 kb on + strand at 489.137 kb on - strand at 489.137 kb on - strand at 489.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 486,712 - MMP_RS02595 0.62 -0.2 486,886 - +0.1 486,890 - +0.1 486,929 - -0.1 486,934 - +0.4 486,937 - -0.0 486,937 - +0.1 486,938 + -0.0 486,981 + -0.4 486,987 - -0.1 486,987 - +0.2 486,987 - -0.0 486,987 - -0.3 486,987 - +0.2 486,988 + +0.6 486,988 + +0.3 486,988 + -0.1 486,988 + +0.3 486,988 + -0.0 487,065 - +0.1 487,066 + +0.2 487,072 - -0.0 487,073 + +0.5 487,073 + +0.4 487,083 - +0.1 487,090 - +0.2 487,090 - +0.2 487,090 - -0.4 487,090 - +0.1 487,090 - -0.3 487,091 + +0.1 487,094 - +0.3 487,094 - +0.0 487,095 + -0.6 487,209 - -0.4 487,979 - MMP_RS02605 0.71 -0.5 488,214 - -0.1 488,219 - +0.3 488,219 - +0.1 488,219 - -0.2 488,278 + MMP_RS02610 0.16 -0.1 488,660 - MMP_RS02610 0.69 -0.3 488,762 - MMP_RS02610 0.83 -0.4 488,762 - MMP_RS02610 0.83 -0.3 488,769 + MMP_RS02610 0.84 +0.1 488,921 + -0.4 489,039 - -0.0 489,095 - +0.3 489,115 + +0.2 489,115 + -0.2 489,115 + +0.1 489,118 + -0.3 489,119 - -0.2 489,120 + +0.4 489,121 - -0.0 489,136 + -0.0 489,137 - +0.1 489,137 - -0.3 489,148 - -0.1
Or see this region's nucleotide sequence