Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02455

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02445 and MMP_RS02450 are separated by 273 nucleotidesMMP_RS02450 and MMP_RS02455 are separated by 12 nucleotidesMMP_RS02455 and MMP_RS02460 are separated by 165 nucleotides MMP_RS02445: MMP_RS02445 - putative DNA binding domain-containing protein, at 456,701 to 458,044 _RS02445 MMP_RS02450: MMP_RS02450 - hypothetical protein, at 458,318 to 458,512 _RS02450 MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142 _RS02455 MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367 _RS02460 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1at 457.560 kb on - strand, within MMP_RS02445at 457.561 kb on + strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.565 kb on + strand, within MMP_RS02445at 457.565 kb on + strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.567 kb on + strand, within MMP_RS02445at 457.567 kb on + strand, within MMP_RS02445at 457.605 kb on - strand, within MMP_RS02445at 457.606 kb on + strand, within MMP_RS02445at 457.611 kb on - strand, within MMP_RS02445at 457.611 kb on - strand, within MMP_RS02445at 457.622 kb on - strand, within MMP_RS02445at 457.675 kb on + strand, within MMP_RS02445at 457.716 kb on - strand, within MMP_RS02445at 457.879 kb on + strand, within MMP_RS02445at 457.919 kb on + strandat 457.932 kb on - strandat 457.942 kb on - strandat 457.943 kb on + strandat 457.996 kb on + strandat 457.996 kb on + strandat 458.048 kb on + strandat 458.048 kb on + strandat 458.048 kb on + strandat 458.054 kb on + strandat 458.054 kb on + strandat 458.064 kb on - strandat 458.087 kb on + strandat 458.098 kb on + strandat 458.136 kb on + strandat 458.136 kb on + strandat 458.214 kb on - strandat 458.231 kb on + strandat 458.250 kb on + strandat 458.308 kb on - strandat 458.347 kb on + strand, within MMP_RS02450at 458.361 kb on - strand, within MMP_RS02450at 458.371 kb on - strand, within MMP_RS02450at 458.392 kb on - strand, within MMP_RS02450at 458.392 kb on - strand, within MMP_RS02450at 458.398 kb on + strand, within MMP_RS02450at 458.398 kb on + strand, within MMP_RS02450at 458.403 kb on + strand, within MMP_RS02450at 458.468 kb on + strand, within MMP_RS02450at 458.532 kb on + strandat 458.628 kb on - strand, within MMP_RS02455at 458.629 kb on + strand, within MMP_RS02455at 458.630 kb on - strand, within MMP_RS02455at 458.760 kb on + strand, within MMP_RS02455at 458.783 kb on - strand, within MMP_RS02455at 458.787 kb on - strand, within MMP_RS02455at 458.787 kb on - strand, within MMP_RS02455at 458.960 kb on + strand, within MMP_RS02455at 458.963 kb on - strand, within MMP_RS02455at 458.974 kb on - strand, within MMP_RS02455at 458.974 kb on - strand, within MMP_RS02455at 458.996 kb on + strand, within MMP_RS02455at 459.136 kb on - strandat 459.212 kb on + strandat 459.241 kb on - strandat 459.255 kb on - strandat 459.288 kb on - strandat 459.307 kb on + strandat 459.321 kb on - strandat 459.344 kb on - strandat 459.345 kb on + strandat 459.378 kb on + strandat 459.409 kb on - strandat 459.409 kb on - strandat 459.409 kb on - strandat 459.410 kb on + strandat 459.411 kb on - strandat 459.446 kb on + strandat 459.448 kb on - strandat 459.448 kb on - strandat 459.448 kb on - strandat 459.449 kb on + strandat 459.451 kb on - strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.453 kb on - strandat 459.453 kb on - strandat 459.454 kb on + strandat 459.457 kb on - strandat 459.457 kb on - strandat 459.457 kb on - strandat 459.458 kb on + strandat 459.482 kb on - strandat 459.482 kb on - strandat 459.482 kb on - strandat 459.502 kb on - strandat 459.502 kb on - strandat 459.515 kb on - strandat 459.519 kb on - strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.546 kb on - strandat 459.546 kb on - strandat 459.547 kb on + strandat 459.550 kb on - strandat 459.596 kb on - strandat 459.659 kb on + strand, within MMP_RS02460at 459.662 kb on + strand, within MMP_RS02460at 459.717 kb on + strand, within MMP_RS02460at 459.727 kb on - strand, within MMP_RS02460at 459.739 kb on - strand, within MMP_RS02460at 459.739 kb on - strand, within MMP_RS02460at 459.740 kb on + strand, within MMP_RS02460at 459.740 kb on + strand, within MMP_RS02460at 459.757 kb on - strand, within MMP_RS02460at 459.769 kb on - strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.833 kb on - strand, within MMP_RS02460at 459.834 kb on + strand, within MMP_RS02460at 459.843 kb on - strand, within MMP_RS02460at 459.855 kb on - strand, within MMP_RS02460at 459.855 kb on - strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.858 kb on - strand, within MMP_RS02460at 459.858 kb on - strand, within MMP_RS02460at 459.859 kb on + strand, within MMP_RS02460at 459.859 kb on + strand, within MMP_RS02460at 459.860 kb on - strand, within MMP_RS02460at 459.861 kb on + strand, within MMP_RS02460at 459.861 kb on + strand, within MMP_RS02460at 459.863 kb on - strand, within MMP_RS02460at 459.864 kb on + strand, within MMP_RS02460at 459.865 kb on - strand, within MMP_RS02460at 459.865 kb on - strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.878 kb on - strand, within MMP_RS02460at 459.955 kb on + strand, within MMP_RS02460at 459.980 kb on - strand, within MMP_RS02460at 459.980 kb on - strand, within MMP_RS02460at 459.981 kb on + strand, within MMP_RS02460at 459.981 kb on + strand, within MMP_RS02460at 459.984 kb on - strand, within MMP_RS02460at 460.025 kb on - strand, within MMP_RS02460at 460.083 kb on - strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.121 kb on + strand, within MMP_RS02460

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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457,560 - MMP_RS02445 0.64 +0.1
457,561 + MMP_RS02445 0.64 +0.4
457,564 - MMP_RS02445 0.64 +0.1
457,564 - MMP_RS02445 0.64 -0.6
457,564 - MMP_RS02445 0.64 -0.3
457,564 - MMP_RS02445 0.64 +0.0
457,564 - MMP_RS02445 0.64 +0.2
457,565 + MMP_RS02445 0.64 -0.0
457,565 + MMP_RS02445 0.64 +0.4
457,566 - MMP_RS02445 0.64 -0.0
457,566 - MMP_RS02445 0.64 -0.1
457,566 - MMP_RS02445 0.64 +0.4
457,567 + MMP_RS02445 0.64 -0.0
457,567 + MMP_RS02445 0.64 -0.6
457,605 - MMP_RS02445 0.67 -0.1
457,606 + MMP_RS02445 0.67 -0.7
457,611 - MMP_RS02445 0.68 -0.2
457,611 - MMP_RS02445 0.68 +0.3
457,622 - MMP_RS02445 0.69 +0.4
457,675 + MMP_RS02445 0.72 +0.3
457,716 - MMP_RS02445 0.76 +0.1
457,879 + MMP_RS02445 0.88 -0.2
457,919 + -0.9
457,932 - -3.7
457,942 - -0.2
457,943 + -0.2
457,996 + -0.3
457,996 + +0.1
458,048 + +0.2
458,048 + -0.1
458,048 + -0.4
458,054 + +0.2
458,054 + +0.4
458,064 - +0.2
458,087 + +0.1
458,098 + -0.2
458,136 + +0.2
458,136 + -0.4
458,214 - +0.3
458,231 + +0.1
458,250 + -0.2
458,308 - +0.0
458,347 + MMP_RS02450 0.15 +0.3
458,361 - MMP_RS02450 0.22 -0.2
458,371 - MMP_RS02450 0.27 +0.1
458,392 - MMP_RS02450 0.38 -0.4
458,392 - MMP_RS02450 0.38 -0.1
458,398 + MMP_RS02450 0.41 -1.3
458,398 + MMP_RS02450 0.41 -1.1
458,403 + MMP_RS02450 0.44 -0.2
458,468 + MMP_RS02450 0.77 -0.2
458,532 + +0.4
458,628 - MMP_RS02455 0.17 -0.2
458,629 + MMP_RS02455 0.17 +0.4
458,630 - MMP_RS02455 0.17 +0.2
458,760 + MMP_RS02455 0.38 +0.0
458,783 - MMP_RS02455 0.42 +0.5
458,787 - MMP_RS02455 0.42 +1.4
458,787 - MMP_RS02455 0.42 -0.3
458,960 + MMP_RS02455 0.70 +0.4
458,963 - MMP_RS02455 0.71 +0.1
458,974 - MMP_RS02455 0.73 +0.3
458,974 - MMP_RS02455 0.73 +0.2
458,996 + MMP_RS02455 0.76 +0.2
459,136 - +0.1
459,212 + +0.1
459,241 - +0.5
459,255 - -0.2
459,288 - +0.2
459,307 + +0.6
459,321 - -0.3
459,344 - +0.1
459,345 + +0.1
459,378 + +0.2
459,409 - -0.6
459,409 - +0.2
459,409 - +0.1
459,410 + +0.4
459,411 - +0.3
459,446 + -0.1
459,448 - -0.2
459,448 - -0.2
459,448 - +0.2
459,449 + -0.0
459,451 - -0.1
459,452 + -0.1
459,452 + -0.9
459,452 + -0.4
459,452 + +0.3
459,453 - -0.2
459,453 - +0.1
459,454 + +0.3
459,457 - -0.5
459,457 - -0.4
459,457 - -0.4
459,458 + +0.4
459,482 - +0.1
459,482 - -1.5
459,482 - -0.1
459,502 - -0.2
459,502 - -0.1
459,515 - +0.1
459,519 - +0.2
459,520 + +0.2
459,520 + +0.0
459,520 + -0.2
459,520 + -0.6
459,520 + +0.0
459,520 + +0.8
459,546 - -0.7
459,546 - +0.0
459,547 + -0.2
459,550 - -0.3
459,596 - -0.2
459,659 + MMP_RS02460 0.11 +0.1
459,662 + MMP_RS02460 0.12 +0.0
459,717 + MMP_RS02460 0.13 +0.1
459,727 - MMP_RS02460 0.14 +0.1
459,739 - MMP_RS02460 0.14 -0.5
459,739 - MMP_RS02460 0.14 -0.2
459,740 + MMP_RS02460 0.14 -0.1
459,740 + MMP_RS02460 0.14 +0.3
459,757 - MMP_RS02460 0.15 +0.1
459,769 - MMP_RS02460 0.15 -0.5
459,770 + MMP_RS02460 0.15 +0.5
459,770 + MMP_RS02460 0.15 -0.1
459,770 + MMP_RS02460 0.15 +0.3
459,833 - MMP_RS02460 0.17 +0.0
459,834 + MMP_RS02460 0.17 +0.4
459,843 - MMP_RS02460 0.17 +0.5
459,855 - MMP_RS02460 0.18 +0.2
459,855 - MMP_RS02460 0.18 +0.1
459,856 + MMP_RS02460 0.18 -0.0
459,856 + MMP_RS02460 0.18 +0.1
459,856 + MMP_RS02460 0.18 +0.3
459,858 - MMP_RS02460 0.18 -0.2
459,858 - MMP_RS02460 0.18 -0.1
459,859 + MMP_RS02460 0.18 +0.3
459,859 + MMP_RS02460 0.18 +0.2
459,860 - MMP_RS02460 0.18 +0.2
459,861 + MMP_RS02460 0.18 +0.3
459,861 + MMP_RS02460 0.18 -0.1
459,863 - MMP_RS02460 0.18 +0.8
459,864 + MMP_RS02460 0.18 +0.1
459,865 - MMP_RS02460 0.18 -0.5
459,865 - MMP_RS02460 0.18 -0.3
459,866 + MMP_RS02460 0.18 -0.0
459,866 + MMP_RS02460 0.18 +0.2
459,866 + MMP_RS02460 0.18 -0.1
459,878 - MMP_RS02460 0.19 -0.2
459,955 + MMP_RS02460 0.21 -0.2
459,980 - MMP_RS02460 0.22 +0.1
459,980 - MMP_RS02460 0.22 +0.2
459,981 + MMP_RS02460 0.22 +0.4
459,981 + MMP_RS02460 0.22 -0.4
459,984 - MMP_RS02460 0.22 +0.1
460,025 - MMP_RS02460 0.23 -0.1
460,083 - MMP_RS02460 0.25 +0.0
460,084 + MMP_RS02460 0.25 +0.4
460,084 + MMP_RS02460 0.25 +0.2
460,084 + MMP_RS02460 0.25 -0.3
460,121 + MMP_RS02460 0.27 +0.1

Or see this region's nucleotide sequence