Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02310

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02300 and MMP_RS02305 are separated by 38 nucleotidesMMP_RS02305 and MMP_RS02310 are separated by 266 nucleotidesMMP_RS02310 and MMP_RS02315 are separated by 0 nucleotidesMMP_RS02315 and MMP_RS02320 overlap by 14 nucleotides MMP_RS02300: MMP_RS02300 - NAD(P)H-dependent oxidoreductase, at 433,982 to 434,476 _RS02300 MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763 _RS02305 MMP_RS02310: MMP_RS02310 - RimK-like ATPgrasp N-terminal domain-containing protein, at 435,030 to 435,635 _RS02310 MMP_RS02315: MMP_RS02315 - RimK family alpha-L-glutamate ligase, at 435,636 to 436,586 _RS02315 MMP_RS02320: MMP_RS02320 - glutamate-cysteine ligase family protein, at 436,573 to 437,676 _RS02320 Position (kb) 435 436Strain fitness (log2 ratio) -1 0 1at 434.033 kb on - strand, within MMP_RS02300at 434.199 kb on + strand, within MMP_RS02300at 434.207 kb on + strand, within MMP_RS02300at 434.208 kb on - strand, within MMP_RS02300at 434.332 kb on - strand, within MMP_RS02300at 434.449 kb on - strandat 434.449 kb on - strandat 434.456 kb on - strandat 434.457 kb on + strandat 434.457 kb on + strandat 434.474 kb on - strandat 434.532 kb on + strandat 434.535 kb on + strandat 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.543 kb on - strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.544 kb on + strand, within MMP_RS02305at 434.572 kb on - strand, within MMP_RS02305at 434.653 kb on + strand, within MMP_RS02305at 434.665 kb on - strand, within MMP_RS02305at 434.679 kb on - strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.728 kb on + strand, within MMP_RS02305at 434.803 kb on - strandat 434.803 kb on - strandat 435.312 kb on - strand, within MMP_RS02310at 435.922 kb on + strand, within MMP_RS02315at 436.008 kb on + strand, within MMP_RS02315at 436.109 kb on + strand, within MMP_RS02315at 436.278 kb on - strand, within MMP_RS02315at 436.326 kb on + strand, within MMP_RS02315at 436.408 kb on + strand, within MMP_RS02315at 436.473 kb on - strand, within MMP_RS02315at 436.491 kb on - strand, within MMP_RS02315at 436.492 kb on + strandat 436.494 kb on + strandat 436.518 kb on - strandat 436.518 kb on - strandat 436.594 kb on - strandat 436.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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434,033 - MMP_RS02300 0.10 +0.8
434,199 + MMP_RS02300 0.44 -0.3
434,207 + MMP_RS02300 0.45 -0.3
434,208 - MMP_RS02300 0.46 +0.2
434,332 - MMP_RS02300 0.71 -0.0
434,449 - -0.2
434,449 - -0.1
434,456 - +0.2
434,457 + -0.1
434,457 + -0.3
434,474 - -0.3
434,532 + -0.1
434,535 + -0.6
434,543 - MMP_RS02305 0.11 +0.1
434,543 - MMP_RS02305 0.11 -0.2
434,543 - MMP_RS02305 0.11 -0.2
434,543 - MMP_RS02305 0.11 +0.1
434,543 - MMP_RS02305 0.11 -0.0
434,543 - MMP_RS02305 0.11 +0.0
434,543 - MMP_RS02305 0.11 -0.2
434,543 - MMP_RS02305 0.11 -0.3
434,543 - MMP_RS02305 0.11 -0.2
434,544 + MMP_RS02305 0.12 -0.0
434,544 + MMP_RS02305 0.12 +0.1
434,544 + MMP_RS02305 0.12 +0.9
434,572 - MMP_RS02305 0.23 -0.0
434,653 + MMP_RS02305 0.55 -0.0
434,665 - MMP_RS02305 0.60 +0.1
434,679 - MMP_RS02305 0.66 -0.6
434,680 + MMP_RS02305 0.66 +0.1
434,680 + MMP_RS02305 0.66 -0.2
434,728 + MMP_RS02305 0.86 -0.4
434,803 - +0.3
434,803 - -0.5
435,312 - MMP_RS02310 0.47 +0.2
435,922 + MMP_RS02315 0.30 -0.0
436,008 + MMP_RS02315 0.39 -0.2
436,109 + MMP_RS02315 0.50 -0.3
436,278 - MMP_RS02315 0.68 -0.1
436,326 + MMP_RS02315 0.73 +0.3
436,408 + MMP_RS02315 0.81 +0.2
436,473 - MMP_RS02315 0.88 +0.6
436,491 - MMP_RS02315 0.90 +0.6
436,492 + +0.4
436,494 + +0.1
436,518 - -0.6
436,518 - +0.5
436,594 - -0.4
436,595 + -0.1

Or see this region's nucleotide sequence