Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02075 and MMP_RS02080 are separated by 2 nucleotides MMP_RS02080 and MMP_RS02085 are separated by 86 nucleotides MMP_RS02085 and MMP_RS02090 are separated by 65 nucleotides
MMP_RS02075: MMP_RS02075 - NAD(P)/FAD-dependent oxidoreductase, at 386,328 to 387,500
_RS02075
MMP_RS02080: MMP_RS02080 - 4Fe-4S binding protein, at 387,503 to 387,667
_RS02080
MMP_RS02085: MMP_RS02085 - inosine/xanthosine triphosphatase, at 387,754 to 388,413
_RS02085
MMP_RS02090: MMP_RS02090 - alanine--glyoxylate aminotransferase family protein, at 388,479 to 389,627
_RS02090
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 386.779 kb on + strand at 387.073 kb on - strand at 387.273 kb on - strand at 387.292 kb on - strand at 387.396 kb on - strand at 387.430 kb on - strand at 387.607 kb on - strand at 387.654 kb on - strand at 387.679 kb on - strand at 387.691 kb on - strand at 387.692 kb on + strand at 387.715 kb on + strand at 387.743 kb on + strand at 387.743 kb on + strand at 387.755 kb on - strand at 387.816 kb on - strand at 387.820 kb on - strand, within MMP_RS02085 at 387.821 kb on + strand, within MMP_RS02085 at 387.821 kb on + strand, within MMP_RS02085 at 387.832 kb on - strand, within MMP_RS02085 at 387.832 kb on - strand, within MMP_RS02085 at 387.835 kb on - strand, within MMP_RS02085 at 387.838 kb on + strand, within MMP_RS02085 at 387.838 kb on + strand, within MMP_RS02085 at 387.952 kb on + strand, within MMP_RS02085 at 388.090 kb on - strand, within MMP_RS02085 at 388.121 kb on - strand, within MMP_RS02085 at 388.364 kb on - strand at 388.365 kb on + strand at 388.380 kb on - strand at 388.414 kb on - strand at 388.414 kb on - strand at 388.438 kb on - strand at 388.438 kb on - strand at 388.439 kb on + strand at 388.473 kb on - strand at 388.480 kb on - strand at 388.533 kb on - strand at 388.629 kb on - strand at 388.657 kb on + strand at 389.127 kb on - strand at 389.135 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 386,779 + +0.9 387,073 - -0.4 387,273 - -0.2 387,292 - -1.9 387,396 - -1.3 387,430 - -0.7 387,607 - -1.5 387,654 - -2.8 387,679 - +0.5 387,691 - -1.5 387,692 + -1.8 387,715 + -0.2 387,743 + +0.3 387,743 + +0.2 387,755 - -0.5 387,816 - +0.1 387,820 - MMP_RS02085 0.10 +0.7 387,821 + MMP_RS02085 0.10 +0.2 387,821 + MMP_RS02085 0.10 +1.0 387,832 - MMP_RS02085 0.12 +0.2 387,832 - MMP_RS02085 0.12 +0.0 387,835 - MMP_RS02085 0.12 +0.1 387,838 + MMP_RS02085 0.13 +0.1 387,838 + MMP_RS02085 0.13 +0.7 387,952 + MMP_RS02085 0.30 -0.1 388,090 - MMP_RS02085 0.51 +0.3 388,121 - MMP_RS02085 0.56 -0.0 388,364 - -0.4 388,365 + +0.2 388,380 - +0.8 388,414 - -0.3 388,414 - -0.0 388,438 - +0.1 388,438 - -0.3 388,439 + +0.4 388,473 - -0.1 388,480 - -0.4 388,533 - -1.6 388,629 - -1.4 388,657 + -3.1 389,127 - -1.6 389,135 + -1.7
Or see this region's nucleotide sequence