Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01935 and MMP_RS01940 are separated by 3 nucleotides MMP_RS01940 and MMP_RS01945 overlap by 26 nucleotides MMP_RS01945 and MMP_RS01950 overlap by 1 nucleotides
MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554
_RS01935
MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499
_RS01940
MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472
_RS01945
MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307
_RS01950
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1
2 at 359.483 kb on - strand at 359.483 kb on - strand at 359.486 kb on + strand at 359.529 kb on - strand at 359.529 kb on - strand at 359.529 kb on - strand at 359.591 kb on + strand at 359.662 kb on - strand, within MMP_RS01940 at 359.712 kb on - strand, within MMP_RS01940 at 359.789 kb on - strand, within MMP_RS01940 at 360.037 kb on + strand, within MMP_RS01940 at 360.099 kb on + strand, within MMP_RS01940 at 360.176 kb on + strand, within MMP_RS01940 at 360.180 kb on + strand, within MMP_RS01940 at 360.458 kb on - strand at 360.480 kb on + strand at 360.513 kb on - strand at 360.514 kb on + strand at 360.518 kb on - strand at 360.612 kb on + strand, within MMP_RS01945 at 360.649 kb on + strand, within MMP_RS01945 at 360.743 kb on - strand, within MMP_RS01945 at 360.884 kb on - strand, within MMP_RS01945 at 360.885 kb on + strand, within MMP_RS01945 at 360.901 kb on - strand, within MMP_RS01945 at 360.906 kb on - strand, within MMP_RS01945 at 360.907 kb on + strand, within MMP_RS01945 at 360.992 kb on + strand, within MMP_RS01945 at 360.995 kb on - strand, within MMP_RS01945 at 360.996 kb on + strand, within MMP_RS01945 at 361.013 kb on - strand, within MMP_RS01945 at 361.015 kb on - strand, within MMP_RS01945 at 361.045 kb on - strand, within MMP_RS01945 at 361.274 kb on + strand, within MMP_RS01945 at 361.282 kb on - strand, within MMP_RS01945 at 361.291 kb on - strand, within MMP_RS01945 at 361.292 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945 at 361.548 kb on - strand at 361.595 kb on - strand at 361.601 kb on + strand at 361.683 kb on - strand, within MMP_RS01950 at 361.749 kb on + strand, within MMP_RS01950 at 361.798 kb on - strand, within MMP_RS01950 at 361.803 kb on + strand, within MMP_RS01950 at 361.803 kb on + strand, within MMP_RS01950 at 361.804 kb on - strand, within MMP_RS01950 at 361.812 kb on + strand, within MMP_RS01950 at 361.813 kb on - strand, within MMP_RS01950 at 361.813 kb on - strand, within MMP_RS01950 at 361.825 kb on - strand, within MMP_RS01950 at 361.841 kb on - strand, within MMP_RS01950 at 361.842 kb on + strand, within MMP_RS01950 at 361.842 kb on + strand, within MMP_RS01950 at 361.874 kb on + strand, within MMP_RS01950 at 361.888 kb on - strand, within MMP_RS01950 at 361.888 kb on - strand, within MMP_RS01950 at 361.889 kb on + strand, within MMP_RS01950 at 361.889 kb on + strand, within MMP_RS01950 at 361.891 kb on + strand, within MMP_RS01950 at 361.891 kb on + strand, within MMP_RS01950 at 361.940 kb on - strand, within MMP_RS01950 at 361.946 kb on - strand, within MMP_RS01950 at 361.971 kb on - strand, within MMP_RS01950 at 361.972 kb on + strand, within MMP_RS01950 at 361.972 kb on + strand, within MMP_RS01950 at 361.975 kb on + strand, within MMP_RS01950 at 362.030 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.301 kb on - strand, within MMP_RS01950 at 362.408 kb on + strand, within MMP_RS01950 at 362.437 kb on + strand, within MMP_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 359,483 - +0.2 359,483 - +0.3 359,486 + -0.1 359,529 - +0.3 359,529 - +0.4 359,529 - -0.1 359,591 + +0.6 359,662 - MMP_RS01940 0.11 -0.2 359,712 - MMP_RS01940 0.16 +0.3 359,789 - MMP_RS01940 0.25 +1.0 360,037 + MMP_RS01940 0.51 +0.3 360,099 + MMP_RS01940 0.57 -0.3 360,176 + MMP_RS01940 0.66 -0.7 360,180 + MMP_RS01940 0.66 +0.9 360,458 - +0.9 360,480 + +0.8 360,513 - +0.2 360,514 + +0.8 360,518 - +2.2 360,612 + MMP_RS01945 0.14 +0.4 360,649 + MMP_RS01945 0.18 -0.2 360,743 - MMP_RS01945 0.27 +0.6 360,884 - MMP_RS01945 0.41 +0.2 360,885 + MMP_RS01945 0.41 +0.5 360,901 - MMP_RS01945 0.43 -0.5 360,906 - MMP_RS01945 0.43 +0.6 360,907 + MMP_RS01945 0.43 +0.8 360,992 + MMP_RS01945 0.52 -0.2 360,995 - MMP_RS01945 0.52 +0.6 360,996 + MMP_RS01945 0.52 +2.5 361,013 - MMP_RS01945 0.54 +0.3 361,015 - MMP_RS01945 0.54 +0.3 361,045 - MMP_RS01945 0.57 +1.3 361,274 + MMP_RS01945 0.80 +0.1 361,282 - MMP_RS01945 0.81 +0.4 361,291 - MMP_RS01945 0.82 +1.2 361,292 + MMP_RS01945 0.82 +0.6 361,294 + MMP_RS01945 0.82 +1.7 361,294 + MMP_RS01945 0.82 +0.6 361,548 - +0.1 361,595 - +0.5 361,601 + +0.6 361,683 - MMP_RS01950 0.11 -0.1 361,749 + MMP_RS01950 0.15 +0.3 361,798 - MMP_RS01950 0.18 +0.7 361,803 + MMP_RS01950 0.18 +0.7 361,803 + MMP_RS01950 0.18 +1.0 361,804 - MMP_RS01950 0.18 +0.2 361,812 + MMP_RS01950 0.19 +0.7 361,813 - MMP_RS01950 0.19 +1.0 361,813 - MMP_RS01950 0.19 -0.7 361,825 - MMP_RS01950 0.19 +0.6 361,841 - MMP_RS01950 0.20 -0.7 361,842 + MMP_RS01950 0.20 +0.7 361,842 + MMP_RS01950 0.20 -0.4 361,874 + MMP_RS01950 0.22 +0.1 361,888 - MMP_RS01950 0.23 +0.6 361,888 - MMP_RS01950 0.23 +1.0 361,889 + MMP_RS01950 0.23 +0.6 361,889 + MMP_RS01950 0.23 -0.3 361,891 + MMP_RS01950 0.23 -0.1 361,891 + MMP_RS01950 0.23 +0.4 361,940 - MMP_RS01950 0.25 -0.0 361,946 - MMP_RS01950 0.26 +0.1 361,971 - MMP_RS01950 0.27 +1.1 361,972 + MMP_RS01950 0.27 -0.8 361,972 + MMP_RS01950 0.27 +0.4 361,975 + MMP_RS01950 0.27 +0.7 362,030 - MMP_RS01950 0.30 +0.4 362,299 - MMP_RS01950 0.45 +1.0 362,299 - MMP_RS01950 0.45 -1.7 362,299 - MMP_RS01950 0.45 +0.9 362,299 - MMP_RS01950 0.45 -0.3 362,301 - MMP_RS01950 0.45 -0.4 362,408 + MMP_RS01950 0.51 +0.2 362,437 + MMP_RS01950 0.53 +0.2
Or see this region's nucleotide sequence