Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01930

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01925 and MMP_RS01930 are separated by 1 nucleotidesMMP_RS01930 and MMP_RS01935 overlap by 4 nucleotides MMP_RS01925: MMP_RS01925 - DUF1616 domain-containing protein, at 356,729 to 357,700 _RS01925 MMP_RS01930: MMP_RS01930 - hypothetical protein, at 357,702 to 358,256 _RS01930 MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554 _RS01935 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.704 kb on + strandat 356.713 kb on - strandat 356.714 kb on + strandat 356.718 kb on - strandat 356.719 kb on + strandat 356.725 kb on - strandat 356.961 kb on - strand, within MMP_RS01925at 357.007 kb on + strand, within MMP_RS01925at 357.010 kb on - strand, within MMP_RS01925at 357.042 kb on - strand, within MMP_RS01925at 357.042 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.064 kb on - strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.074 kb on + strand, within MMP_RS01925at 357.079 kb on + strand, within MMP_RS01925at 357.171 kb on - strand, within MMP_RS01925at 357.222 kb on - strand, within MMP_RS01925at 357.287 kb on - strand, within MMP_RS01925at 357.287 kb on - strand, within MMP_RS01925at 357.288 kb on + strand, within MMP_RS01925at 357.343 kb on + strand, within MMP_RS01925at 357.404 kb on - strand, within MMP_RS01925at 357.405 kb on + strand, within MMP_RS01925at 357.409 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.445 kb on - strand, within MMP_RS01925at 357.446 kb on + strand, within MMP_RS01925at 357.466 kb on - strand, within MMP_RS01925at 357.490 kb on - strand, within MMP_RS01925at 357.536 kb on + strand, within MMP_RS01925at 357.573 kb on - strand, within MMP_RS01925at 357.574 kb on + strand, within MMP_RS01925at 357.707 kb on - strandat 357.856 kb on + strand, within MMP_RS01930at 357.858 kb on - strand, within MMP_RS01930at 357.859 kb on + strand, within MMP_RS01930at 357.875 kb on - strand, within MMP_RS01930at 357.879 kb on - strand, within MMP_RS01930at 357.924 kb on - strand, within MMP_RS01930at 357.925 kb on + strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.927 kb on + strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.929 kb on + strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.931 kb on + strand, within MMP_RS01930at 357.957 kb on - strand, within MMP_RS01930at 357.958 kb on + strand, within MMP_RS01930at 357.966 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.975 kb on - strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.981 kb on - strand, within MMP_RS01930at 357.982 kb on + strand, within MMP_RS01930at 358.011 kb on - strand, within MMP_RS01930at 358.012 kb on + strand, within MMP_RS01930at 358.023 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.053 kb on + strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.062 kb on - strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.164 kb on + strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.166 kb on + strand, within MMP_RS01930at 358.204 kb on - strandat 358.240 kb on + strandat 358.247 kb on - strandat 358.247 kb on - strandat 358.271 kb on - strandat 358.271 kb on - strandat 358.272 kb on + strandat 358.272 kb on + strandat 358.283 kb on - strandat 358.299 kb on + strandat 358.366 kb on + strandat 358.431 kb on + strand, within MMP_RS01935at 358.504 kb on - strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.536 kb on - strand, within MMP_RS01935at 358.537 kb on + strand, within MMP_RS01935at 358.618 kb on - strand, within MMP_RS01935at 358.621 kb on - strand, within MMP_RS01935at 358.665 kb on + strand, within MMP_RS01935at 358.670 kb on + strand, within MMP_RS01935at 358.678 kb on - strand, within MMP_RS01935at 358.679 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.782 kb on - strand, within MMP_RS01935at 358.783 kb on + strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.787 kb on - strand, within MMP_RS01935at 358.788 kb on + strand, within MMP_RS01935at 358.811 kb on - strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.862 kb on + strand, within MMP_RS01935at 358.864 kb on - strand, within MMP_RS01935at 358.865 kb on + strand, within MMP_RS01935at 358.957 kb on - strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 359.090 kb on + strand, within MMP_RS01935at 359.117 kb on + strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.195 kb on - strand, within MMP_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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356,704 + +0.2
356,713 - +0.4
356,714 + -0.2
356,718 - +0.4
356,719 + +0.8
356,725 - +0.5
356,961 - MMP_RS01925 0.24 +0.8
357,007 + MMP_RS01925 0.29 -0.6
357,010 - MMP_RS01925 0.29 -0.1
357,042 - MMP_RS01925 0.32 -0.1
357,042 - MMP_RS01925 0.32 -1.4
357,062 - MMP_RS01925 0.34 -1.8
357,062 - MMP_RS01925 0.34 -0.3
357,062 - MMP_RS01925 0.34 +2.0
357,064 - MMP_RS01925 0.34 -0.4
357,065 + MMP_RS01925 0.35 -0.8
357,065 + MMP_RS01925 0.35 +1.7
357,065 + MMP_RS01925 0.35 +1.2
357,074 + MMP_RS01925 0.35 +0.8
357,079 + MMP_RS01925 0.36 +2.2
357,171 - MMP_RS01925 0.45 +1.6
357,222 - MMP_RS01925 0.51 +0.3
357,287 - MMP_RS01925 0.57 +2.1
357,287 - MMP_RS01925 0.57 +1.1
357,288 + MMP_RS01925 0.58 -0.5
357,343 + MMP_RS01925 0.63 +1.0
357,404 - MMP_RS01925 0.69 +1.0
357,405 + MMP_RS01925 0.70 -0.5
357,409 - MMP_RS01925 0.70 +1.3
357,417 - MMP_RS01925 0.71 +1.0
357,417 - MMP_RS01925 0.71 +1.2
357,431 + MMP_RS01925 0.72 +0.6
357,431 + MMP_RS01925 0.72 +1.1
357,443 - MMP_RS01925 0.73 +0.3
357,443 - MMP_RS01925 0.73 +0.4
357,443 - MMP_RS01925 0.73 +1.4
357,445 - MMP_RS01925 0.74 +1.0
357,446 + MMP_RS01925 0.74 -0.5
357,466 - MMP_RS01925 0.76 +0.6
357,490 - MMP_RS01925 0.78 +0.1
357,536 + MMP_RS01925 0.83 +0.6
357,573 - MMP_RS01925 0.87 +0.7
357,574 + MMP_RS01925 0.87 -0.0
357,707 - +0.1
357,856 + MMP_RS01930 0.28 -0.5
357,858 - MMP_RS01930 0.28 +0.2
357,859 + MMP_RS01930 0.28 +0.3
357,875 - MMP_RS01930 0.31 -0.0
357,879 - MMP_RS01930 0.32 +0.3
357,924 - MMP_RS01930 0.40 +0.8
357,925 + MMP_RS01930 0.40 +0.1
357,926 - MMP_RS01930 0.40 -0.2
357,926 - MMP_RS01930 0.40 +2.4
357,926 - MMP_RS01930 0.40 +0.8
357,927 + MMP_RS01930 0.41 -0.1
357,928 - MMP_RS01930 0.41 +0.3
357,928 - MMP_RS01930 0.41 +0.1
357,928 - MMP_RS01930 0.41 +0.5
357,928 - MMP_RS01930 0.41 +0.0
357,928 - MMP_RS01930 0.41 +0.6
357,928 - MMP_RS01930 0.41 +0.0
357,929 + MMP_RS01930 0.41 -0.3
357,930 - MMP_RS01930 0.41 +1.0
357,930 - MMP_RS01930 0.41 +0.1
357,931 + MMP_RS01930 0.41 +1.3
357,957 - MMP_RS01930 0.46 +0.3
357,958 + MMP_RS01930 0.46 +0.8
357,966 - MMP_RS01930 0.48 +0.6
357,972 - MMP_RS01930 0.49 +1.0
357,972 - MMP_RS01930 0.49 +0.2
357,973 + MMP_RS01930 0.49 +0.1
357,973 + MMP_RS01930 0.49 +0.2
357,973 + MMP_RS01930 0.49 +0.2
357,973 + MMP_RS01930 0.49 -0.3
357,973 + MMP_RS01930 0.49 +0.2
357,973 + MMP_RS01930 0.49 +1.1
357,975 - MMP_RS01930 0.49 +0.4
357,976 + MMP_RS01930 0.49 -0.4
357,976 + MMP_RS01930 0.49 -0.1
357,976 + MMP_RS01930 0.49 -0.0
357,977 - MMP_RS01930 0.50 +0.9
357,977 - MMP_RS01930 0.50 +0.5
357,978 + MMP_RS01930 0.50 +0.3
357,978 + MMP_RS01930 0.50 +0.3
357,981 - MMP_RS01930 0.50 +0.4
357,982 + MMP_RS01930 0.50 +0.3
358,011 - MMP_RS01930 0.56 -0.2
358,012 + MMP_RS01930 0.56 -0.3
358,023 - MMP_RS01930 0.58 +0.9
358,028 - MMP_RS01930 0.59 +0.7
358,028 - MMP_RS01930 0.59 -0.7
358,053 + MMP_RS01930 0.63 +0.7
358,058 - MMP_RS01930 0.64 +0.8
358,058 - MMP_RS01930 0.64 +1.0
358,058 - MMP_RS01930 0.64 +0.4
358,062 - MMP_RS01930 0.65 -0.2
358,115 + MMP_RS01930 0.74 +1.2
358,115 + MMP_RS01930 0.74 -0.4
358,164 + MMP_RS01930 0.83 -0.1
358,165 - MMP_RS01930 0.83 +1.4
358,165 - MMP_RS01930 0.83 +0.7
358,166 + MMP_RS01930 0.84 +0.2
358,204 - +0.4
358,240 + -0.3
358,247 - -0.3
358,247 - -0.7
358,271 - -0.0
358,271 - +1.3
358,272 + +0.6
358,272 + +1.1
358,283 - +0.5
358,299 + -0.4
358,366 + -0.0
358,431 + MMP_RS01935 0.14 +0.1
358,504 - MMP_RS01935 0.19 +1.1
358,523 + MMP_RS01935 0.21 +0.6
358,523 + MMP_RS01935 0.21 +0.3
358,536 - MMP_RS01935 0.22 +0.8
358,537 + MMP_RS01935 0.22 +0.6
358,618 - MMP_RS01935 0.28 +0.3
358,621 - MMP_RS01935 0.28 +0.2
358,665 + MMP_RS01935 0.32 +0.4
358,670 + MMP_RS01935 0.32 +0.7
358,678 - MMP_RS01935 0.33 +0.8
358,679 + MMP_RS01935 0.33 +0.7
358,725 + MMP_RS01935 0.36 -0.1
358,725 + MMP_RS01935 0.36 +0.5
358,782 - MMP_RS01935 0.41 +1.1
358,783 + MMP_RS01935 0.41 +0.6
358,785 - MMP_RS01935 0.41 -0.1
358,785 - MMP_RS01935 0.41 -1.0
358,785 - MMP_RS01935 0.41 -0.0
358,786 + MMP_RS01935 0.41 +0.0
358,786 + MMP_RS01935 0.41 +0.9
358,787 - MMP_RS01935 0.41 -0.7
358,788 + MMP_RS01935 0.41 +1.0
358,811 - MMP_RS01935 0.43 +1.1
358,816 + MMP_RS01935 0.43 +0.6
358,816 + MMP_RS01935 0.43 -0.3
358,862 + MMP_RS01935 0.47 +0.4
358,864 - MMP_RS01935 0.47 +0.2
358,865 + MMP_RS01935 0.47 +0.2
358,957 - MMP_RS01935 0.54 +0.1
358,992 + MMP_RS01935 0.57 +0.6
358,992 + MMP_RS01935 0.57 -0.5
359,090 + MMP_RS01935 0.64 +0.4
359,117 + MMP_RS01935 0.66 -0.3
359,174 - MMP_RS01935 0.71 -0.0
359,174 - MMP_RS01935 0.71 +0.1
359,195 - MMP_RS01935 0.72 +0.7

Or see this region's nucleotide sequence