Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01455 and MMP_RS01460 are separated by 23 nucleotides MMP_RS01460 and MMP_RS01465 are separated by 1 nucleotides MMP_RS01465 and MMP_RS01470 are separated by 25 nucleotides MMP_RS01470 and MMP_RS01475 are separated by 18 nucleotides
MMP_RS01455: MMP_RS01455 - nickel pincer cofactor biosynthesis protein LarC, at 268,844 to 270,058
_RS01455
MMP_RS01460: MMP_RS01460 - hypothetical protein, at 270,082 to 270,741
_RS01460
MMP_RS01465: MMP_RS01465 - hypothetical protein, at 270,743 to 271,441
_RS01465
MMP_RS01470: MMP_RS01470 - ATP-binding cassette domain-containing protein, at 271,467 to 272,258
_RS01470
MMP_RS01475: MMP_RS01475 - phosphosulfolactate synthase, at 272,277 to 273,032
_RS01475
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1 at 269.824 kb on - strand, within MMP_RS01455 at 270.061 kb on + strand at 270.061 kb on + strand at 270.064 kb on - strand at 270.069 kb on - strand at 270.069 kb on - strand at 270.070 kb on + strand at 270.070 kb on + strand at 270.071 kb on - strand at 270.071 kb on - strand at 270.072 kb on + strand at 270.075 kb on + strand at 270.078 kb on - strand at 270.079 kb on + strand at 270.084 kb on + strand at 270.088 kb on - strand at 270.224 kb on - strand, within MMP_RS01460 at 270.224 kb on - strand, within MMP_RS01460 at 270.324 kb on + strand, within MMP_RS01460 at 270.756 kb on - strand at 271.001 kb on - strand, within MMP_RS01465 at 271.023 kb on + strand, within MMP_RS01465 at 271.037 kb on + strand, within MMP_RS01465 at 271.396 kb on - strand at 271.686 kb on - strand, within MMP_RS01470 at 271.767 kb on - strand, within MMP_RS01470 at 271.839 kb on - strand, within MMP_RS01470 at 271.890 kb on - strand, within MMP_RS01470 at 271.974 kb on + strand, within MMP_RS01470 at 272.187 kb on - strand at 272.382 kb on - strand, within MMP_RS01475 at 272.388 kb on + strand, within MMP_RS01475 at 272.427 kb on - strand, within MMP_RS01475 at 272.428 kb on + strand, within MMP_RS01475 at 272.428 kb on + strand, within MMP_RS01475
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 269,824 - MMP_RS01455 0.81 +0.1 270,061 + -0.3 270,061 + +0.0 270,064 - +0.1 270,069 - +0.0 270,069 - -0.4 270,070 + -0.9 270,070 + +0.3 270,071 - -0.1 270,071 - -0.2 270,072 + -0.0 270,075 + +0.0 270,078 - +0.0 270,079 + +0.1 270,084 + +0.1 270,088 - +0.4 270,224 - MMP_RS01460 0.22 -0.3 270,224 - MMP_RS01460 0.22 -0.3 270,324 + MMP_RS01460 0.37 +0.4 270,756 - +0.1 271,001 - MMP_RS01465 0.37 +0.5 271,023 + MMP_RS01465 0.40 +0.5 271,037 + MMP_RS01465 0.42 +0.3 271,396 - +0.3 271,686 - MMP_RS01470 0.28 +0.8 271,767 - MMP_RS01470 0.38 +0.1 271,839 - MMP_RS01470 0.47 +0.0 271,890 - MMP_RS01470 0.53 +0.3 271,974 + MMP_RS01470 0.64 -0.5 272,187 - +0.1 272,382 - MMP_RS01475 0.14 +0.3 272,388 + MMP_RS01475 0.15 +0.4 272,427 - MMP_RS01475 0.20 +0.6 272,428 + MMP_RS01475 0.20 +0.1 272,428 + MMP_RS01475 0.20 -0.2
Or see this region's nucleotide sequence