Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01450 and MMP_RS01455 are separated by 245 nucleotides MMP_RS01455 and MMP_RS01460 are separated by 23 nucleotides MMP_RS01460 and MMP_RS01465 are separated by 1 nucleotides
MMP_RS01450: MMP_RS01450 - tRNA pseudouridine(38-40) synthase TruA, at 267,810 to 268,598
_RS01450
MMP_RS01455: MMP_RS01455 - nickel pincer cofactor biosynthesis protein LarC, at 268,844 to 270,058
_RS01455
MMP_RS01460: MMP_RS01460 - hypothetical protein, at 270,082 to 270,741
_RS01460
MMP_RS01465: MMP_RS01465 - hypothetical protein, at 270,743 to 271,441
_RS01465
Position (kb) 268
269
270
271 Strain fitness (log2 ratio) -1
0
1 at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.926 kb on - strand, within MMP_RS01450 at 267.930 kb on + strand, within MMP_RS01450 at 267.988 kb on - strand, within MMP_RS01450 at 268.037 kb on - strand, within MMP_RS01450 at 268.107 kb on - strand, within MMP_RS01450 at 268.279 kb on + strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.283 kb on - strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.284 kb on + strand, within MMP_RS01450 at 268.413 kb on - strand, within MMP_RS01450 at 268.418 kb on + strand, within MMP_RS01450 at 268.434 kb on - strand, within MMP_RS01450 at 268.587 kb on + strand at 268.587 kb on + strand at 268.590 kb on - strand at 268.590 kb on - strand at 268.594 kb on - strand at 268.594 kb on - strand at 268.602 kb on + strand at 268.602 kb on + strand at 268.610 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.612 kb on - strand at 268.613 kb on + strand at 268.657 kb on - strand at 268.657 kb on - strand at 268.657 kb on - strand at 268.660 kb on + strand at 268.694 kb on - strand at 268.694 kb on - strand at 268.701 kb on + strand at 268.703 kb on - strand at 268.704 kb on + strand at 269.100 kb on - strand, within MMP_RS01455 at 269.110 kb on - strand, within MMP_RS01455 at 269.155 kb on - strand, within MMP_RS01455 at 269.157 kb on - strand, within MMP_RS01455 at 269.209 kb on + strand, within MMP_RS01455 at 269.283 kb on + strand, within MMP_RS01455 at 269.701 kb on + strand, within MMP_RS01455 at 269.824 kb on - strand, within MMP_RS01455 at 270.061 kb on + strand at 270.061 kb on + strand at 270.064 kb on - strand at 270.069 kb on - strand at 270.069 kb on - strand at 270.070 kb on + strand at 270.070 kb on + strand at 270.071 kb on - strand at 270.071 kb on - strand at 270.072 kb on + strand at 270.075 kb on + strand at 270.078 kb on - strand at 270.079 kb on + strand at 270.084 kb on + strand at 270.088 kb on - strand at 270.224 kb on - strand, within MMP_RS01460 at 270.224 kb on - strand, within MMP_RS01460 at 270.324 kb on + strand, within MMP_RS01460 at 270.756 kb on - strand at 271.001 kb on - strand, within MMP_RS01465 at 271.023 kb on + strand, within MMP_RS01465 at 271.037 kb on + strand, within MMP_RS01465
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 267,904 - MMP_RS01450 0.12 +0.1 267,904 - MMP_RS01450 0.12 +0.2 267,904 - MMP_RS01450 0.12 -0.5 267,905 + MMP_RS01450 0.12 +0.9 267,905 + MMP_RS01450 0.12 +0.0 267,926 - MMP_RS01450 0.15 +0.2 267,930 + MMP_RS01450 0.15 -0.9 267,988 - MMP_RS01450 0.23 +0.3 268,037 - MMP_RS01450 0.29 -0.0 268,107 - MMP_RS01450 0.38 -0.0 268,279 + MMP_RS01450 0.59 +0.4 268,283 - MMP_RS01450 0.60 -0.9 268,283 - MMP_RS01450 0.60 -0.1 268,283 - MMP_RS01450 0.60 +0.2 268,283 - MMP_RS01450 0.60 +0.2 268,284 + MMP_RS01450 0.60 +1.1 268,284 + MMP_RS01450 0.60 +0.6 268,284 + MMP_RS01450 0.60 +0.1 268,413 - MMP_RS01450 0.76 -0.1 268,418 + MMP_RS01450 0.77 +0.4 268,434 - MMP_RS01450 0.79 +0.1 268,587 + -0.1 268,587 + +0.7 268,590 - +0.3 268,590 - -0.3 268,594 - +0.1 268,594 - +0.1 268,602 + -0.4 268,602 + -0.4 268,610 - +1.1 268,612 - +0.2 268,612 - +0.5 268,612 - +0.6 268,612 - +0.1 268,613 + +0.1 268,657 - +0.3 268,657 - +0.0 268,657 - -0.3 268,660 + -0.1 268,694 - +0.4 268,694 - +1.3 268,701 + -0.7 268,703 - +0.3 268,704 + +0.2 269,100 - MMP_RS01455 0.21 +0.2 269,110 - MMP_RS01455 0.22 +0.1 269,155 - MMP_RS01455 0.26 +0.3 269,157 - MMP_RS01455 0.26 +0.3 269,209 + MMP_RS01455 0.30 +0.4 269,283 + MMP_RS01455 0.36 +0.2 269,701 + MMP_RS01455 0.71 +0.2 269,824 - MMP_RS01455 0.81 +0.1 270,061 + -0.3 270,061 + +0.0 270,064 - +0.1 270,069 - +0.0 270,069 - -0.4 270,070 + -0.9 270,070 + +0.3 270,071 - -0.1 270,071 - -0.2 270,072 + -0.0 270,075 + +0.0 270,078 - +0.0 270,079 + +0.1 270,084 + +0.1 270,088 - +0.4 270,224 - MMP_RS01460 0.22 -0.3 270,224 - MMP_RS01460 0.22 -0.3 270,324 + MMP_RS01460 0.37 +0.4 270,756 - +0.1 271,001 - MMP_RS01465 0.37 +0.5 271,023 + MMP_RS01465 0.40 +0.5 271,037 + MMP_RS01465 0.42 +0.3
Or see this region's nucleotide sequence