Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01285

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01280 and MMP_RS01285 overlap by 1 nucleotidesMMP_RS01285 and MMP_RS01290 are separated by 33 nucleotidesMMP_RS01290 and MMP_RS01295 overlap by 23 nucleotidesMMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635 _RS01280 MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528 _RS01285 MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960 _RS01290 MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393 _RS01295 MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930 _RS01300 Position (kb) 242 243 244Strain fitness (log2 ratio) -1 0 1at 241.691 kb on + strand, within MMP_RS01280at 241.742 kb on - strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.755 kb on - strand, within MMP_RS01280at 241.822 kb on + strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.832 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.866 kb on + strand, within MMP_RS01280at 241.874 kb on - strand, within MMP_RS01280at 242.036 kb on - strand, within MMP_RS01280at 242.042 kb on - strand, within MMP_RS01280at 242.043 kb on + strand, within MMP_RS01280at 242.043 kb on + strand, within MMP_RS01280at 242.067 kb on + strand, within MMP_RS01280at 242.067 kb on + strand, within MMP_RS01280at 242.152 kb on - strand, within MMP_RS01280at 242.230 kb on + strand, within MMP_RS01280at 242.309 kb on - strand, within MMP_RS01280at 242.390 kb on - strand, within MMP_RS01280at 242.446 kb on - strand, within MMP_RS01280at 242.495 kb on + strand, within MMP_RS01280at 242.518 kb on + strand, within MMP_RS01280at 242.547 kb on - strandat 242.547 kb on - strandat 242.548 kb on + strandat 242.606 kb on - strandat 242.630 kb on + strandat 242.652 kb on + strandat 242.656 kb on - strandat 242.656 kb on - strandat 242.721 kb on - strandat 242.722 kb on + strandat 242.734 kb on - strand, within MMP_RS01285at 242.758 kb on + strand, within MMP_RS01285at 242.892 kb on - strand, within MMP_RS01285at 243.008 kb on - strand, within MMP_RS01285at 243.009 kb on + strand, within MMP_RS01285at 243.011 kb on - strand, within MMP_RS01285at 243.015 kb on - strand, within MMP_RS01285at 243.072 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.188 kb on - strand, within MMP_RS01285at 243.239 kb on - strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.393 kb on + strand, within MMP_RS01285at 243.437 kb on + strand, within MMP_RS01285at 243.439 kb on + strandat 243.442 kb on + strandat 243.532 kb on + strandat 243.558 kb on - strandat 243.629 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.849 kb on - strand, within MMP_RS01290at 243.850 kb on + strand, within MMP_RS01290at 243.855 kb on - strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.877 kb on - strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.999 kb on - strand, within MMP_RS01295at 244.000 kb on + strand, within MMP_RS01295at 244.131 kb on + strand, within MMP_RS01295at 244.185 kb on + strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.191 kb on - strand, within MMP_RS01295at 244.214 kb on + strand, within MMP_RS01295at 244.229 kb on + strand, within MMP_RS01295at 244.288 kb on - strand, within MMP_RS01295at 244.313 kb on + strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.381 kb on - strandat 244.407 kb on + strandat 244.414 kb on + strandat 244.439 kb on - strandat 244.441 kb on - strandat 244.471 kb on - strandat 244.472 kb on + strandat 244.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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241,691 + MMP_RS01280 0.18 +0.4
241,742 - MMP_RS01280 0.22 +0.3
241,743 + MMP_RS01280 0.22 -0.5
241,743 + MMP_RS01280 0.22 -0.0
241,755 - MMP_RS01280 0.23 +0.4
241,822 + MMP_RS01280 0.29 +0.2
241,829 - MMP_RS01280 0.30 -0.0
241,829 - MMP_RS01280 0.30 +0.4
241,832 + MMP_RS01280 0.30 -0.0
241,862 + MMP_RS01280 0.33 +0.1
241,862 + MMP_RS01280 0.33 +0.6
241,866 + MMP_RS01280 0.33 -0.2
241,874 - MMP_RS01280 0.34 +0.5
242,036 - MMP_RS01280 0.48 +0.2
242,042 - MMP_RS01280 0.48 -0.0
242,043 + MMP_RS01280 0.48 +0.3
242,043 + MMP_RS01280 0.48 +0.1
242,067 + MMP_RS01280 0.50 -0.0
242,067 + MMP_RS01280 0.50 -0.1
242,152 - MMP_RS01280 0.58 -0.1
242,230 + MMP_RS01280 0.65 +0.1
242,309 - MMP_RS01280 0.72 -0.3
242,390 - MMP_RS01280 0.79 -0.1
242,446 - MMP_RS01280 0.83 +0.2
242,495 + MMP_RS01280 0.88 +0.1
242,518 + MMP_RS01280 0.90 +0.1
242,547 - +0.2
242,547 - +0.3
242,548 + +0.6
242,606 - +0.2
242,630 + +0.2
242,652 + +0.4
242,656 - -0.2
242,656 - -0.1
242,721 - -0.1
242,722 + +0.7
242,734 - MMP_RS01285 0.11 +0.4
242,758 + MMP_RS01285 0.14 +0.4
242,892 - MMP_RS01285 0.29 +0.2
243,008 - MMP_RS01285 0.42 -0.1
243,009 + MMP_RS01285 0.42 +0.0
243,011 - MMP_RS01285 0.42 -0.0
243,015 - MMP_RS01285 0.43 +0.5
243,072 + MMP_RS01285 0.49 +0.1
243,114 + MMP_RS01285 0.54 +0.3
243,114 + MMP_RS01285 0.54 -0.0
243,188 - MMP_RS01285 0.62 -0.3
243,239 - MMP_RS01285 0.68 +0.4
243,292 + MMP_RS01285 0.73 -0.2
243,292 + MMP_RS01285 0.73 +0.2
243,292 + MMP_RS01285 0.73 -0.1
243,393 + MMP_RS01285 0.85 +0.2
243,437 + MMP_RS01285 0.90 +0.2
243,439 + +1.1
243,442 + +0.5
243,532 + +0.1
243,558 - +0.3
243,629 - MMP_RS01290 0.17 +0.4
243,843 - MMP_RS01290 0.70 +0.6
243,843 - MMP_RS01290 0.70 +0.2
243,844 + MMP_RS01290 0.71 +0.1
243,844 + MMP_RS01290 0.71 +0.2
243,845 - MMP_RS01290 0.71 +0.5
243,845 - MMP_RS01290 0.71 +0.3
243,846 + MMP_RS01290 0.71 +0.1
243,846 + MMP_RS01290 0.71 +0.3
243,849 - MMP_RS01290 0.72 +0.1
243,850 + MMP_RS01290 0.72 +0.0
243,855 - MMP_RS01290 0.73 -0.1
243,870 + MMP_RS01290 0.77 -0.5
243,870 + MMP_RS01290 0.77 +0.1
243,877 - MMP_RS01290 0.79 -0.1
243,878 + MMP_RS01290 0.79 +0.1
243,878 + MMP_RS01290 0.79 +0.7
243,879 - MMP_RS01290 0.79 +0.3
243,879 - MMP_RS01290 0.79 -0.2
243,884 + MMP_RS01290 0.81 -0.0
243,884 + MMP_RS01290 0.81 +0.3
243,999 - MMP_RS01295 0.13 +0.6
244,000 + MMP_RS01295 0.14 +0.0
244,131 + MMP_RS01295 0.42 -0.0
244,185 + MMP_RS01295 0.54 -0.1
244,189 - MMP_RS01295 0.55 -0.2
244,189 - MMP_RS01295 0.55 +0.1
244,190 + MMP_RS01295 0.55 +0.2
244,190 + MMP_RS01295 0.55 -1.5
244,190 + MMP_RS01295 0.55 +0.4
244,191 - MMP_RS01295 0.55 -0.1
244,214 + MMP_RS01295 0.61 +0.3
244,229 + MMP_RS01295 0.64 -0.1
244,288 - MMP_RS01295 0.77 +0.4
244,313 + MMP_RS01295 0.82 -0.1
244,336 - MMP_RS01295 0.87 -0.6
244,336 - MMP_RS01295 0.87 -0.1
244,336 - MMP_RS01295 0.87 -0.3
244,336 - MMP_RS01295 0.87 +0.1
244,336 - MMP_RS01295 0.87 -0.8
244,337 + MMP_RS01295 0.88 +0.9
244,337 + MMP_RS01295 0.88 -0.0
244,381 - +0.4
244,407 + -0.2
244,414 + +0.5
244,439 - -0.5
244,441 - +0.2
244,471 - -0.2
244,472 + +0.1
244,491 - +1.2

Or see this region's nucleotide sequence