Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00050 and MMP_RS00055 are separated by 81 nucleotides MMP_RS00055 and MMP_RS00060 are separated by 127 nucleotides
MMP_RS00050: MMP_RS00050 - AarF/UbiB family protein, at 12,647 to 13,543
_RS00050
MMP_RS00055: MMP_RS00055 - DUF2254 domain-containing protein, at 13,625 to 15,208
_RS00055
MMP_RS00060: MMP_RS00060 - 3-dehydroquinate synthase II, at 15,336 to 16,421
_RS00060
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 12.653 kb on + strand at 12.665 kb on - strand at 12.668 kb on + strand at 12.681 kb on - strand at 12.682 kb on + strand at 12.685 kb on - strand at 12.686 kb on + strand at 12.689 kb on - strand at 12.689 kb on - strand at 12.690 kb on + strand at 12.690 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.699 kb on + strand at 12.729 kb on - strand at 12.758 kb on - strand, within MMP_RS00050 at 12.777 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.882 kb on + strand, within MMP_RS00050 at 12.924 kb on - strand, within MMP_RS00050 at 13.004 kb on - strand, within MMP_RS00050 at 13.073 kb on - strand, within MMP_RS00050 at 13.145 kb on + strand, within MMP_RS00050 at 13.168 kb on + strand, within MMP_RS00050 at 13.247 kb on + strand, within MMP_RS00050 at 13.324 kb on - strand, within MMP_RS00050 at 13.431 kb on + strand, within MMP_RS00050 at 13.595 kb on + strand at 13.598 kb on + strand at 13.598 kb on + strand at 13.608 kb on - strand at 13.608 kb on - strand at 13.630 kb on - strand at 13.631 kb on + strand at 13.703 kb on + strand at 13.787 kb on - strand, within MMP_RS00055 at 13.835 kb on - strand, within MMP_RS00055 at 13.849 kb on + strand, within MMP_RS00055 at 13.991 kb on - strand, within MMP_RS00055 at 13.994 kb on + strand, within MMP_RS00055 at 14.033 kb on - strand, within MMP_RS00055 at 14.264 kb on - strand, within MMP_RS00055 at 14.272 kb on + strand, within MMP_RS00055 at 14.283 kb on - strand, within MMP_RS00055 at 14.327 kb on - strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.334 kb on - strand, within MMP_RS00055 at 14.345 kb on - strand, within MMP_RS00055 at 14.420 kb on - strand, within MMP_RS00055 at 14.444 kb on - strand, within MMP_RS00055 at 14.448 kb on - strand, within MMP_RS00055 at 14.575 kb on - strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.626 kb on + strand, within MMP_RS00055 at 14.742 kb on - strand, within MMP_RS00055 at 14.801 kb on + strand, within MMP_RS00055 at 14.801 kb on + strand, within MMP_RS00055 at 14.967 kb on + strand, within MMP_RS00055 at 15.046 kb on - strand, within MMP_RS00055 at 15.047 kb on + strand, within MMP_RS00055 at 15.131 kb on - strand at 15.172 kb on - strand at 15.173 kb on + strand at 15.177 kb on - strand at 15.177 kb on - strand at 15.234 kb on + strand at 15.237 kb on - strand at 15.237 kb on - strand at 15.238 kb on + strand at 15.242 kb on - strand at 15.242 kb on - strand at 15.242 kb on - strand at 15.246 kb on - strand at 15.247 kb on + strand at 15.247 kb on + strand at 15.247 kb on + strand at 15.253 kb on + strand at 15.267 kb on + strand at 15.279 kb on - strand at 15.280 kb on + strand at 15.515 kb on + strand, within MMP_RS00060 at 15.590 kb on + strand, within MMP_RS00060 at 16.082 kb on + strand, within MMP_RS00060
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 12,653 + +0.3 12,665 - -1.8 12,668 + -2.1 12,681 - -0.5 12,682 + -2.0 12,685 - -1.7 12,686 + -2.0 12,689 - -0.6 12,689 - -1.4 12,690 + -1.7 12,690 + -2.1 12,695 + -1.2 12,695 + -0.8 12,695 + -1.7 12,695 + -1.8 12,695 + -1.9 12,695 + -1.1 12,699 + -0.7 12,729 - -1.2 12,758 - MMP_RS00050 0.12 -1.0 12,777 - MMP_RS00050 0.14 -1.1 12,782 - MMP_RS00050 0.15 -0.7 12,782 - MMP_RS00050 0.15 -1.3 12,882 + MMP_RS00050 0.26 -0.1 12,924 - MMP_RS00050 0.31 -0.3 13,004 - MMP_RS00050 0.40 -0.2 13,073 - MMP_RS00050 0.47 +0.4 13,145 + MMP_RS00050 0.56 -0.8 13,168 + MMP_RS00050 0.58 -0.4 13,247 + MMP_RS00050 0.67 -0.4 13,324 - MMP_RS00050 0.75 -0.1 13,431 + MMP_RS00050 0.87 -0.7 13,595 + -0.3 13,598 + -0.0 13,598 + -1.1 13,608 - -0.7 13,608 - -1.8 13,630 - -0.5 13,631 + -0.3 13,703 + +0.4 13,787 - MMP_RS00055 0.10 +0.1 13,835 - MMP_RS00055 0.13 +0.4 13,849 + MMP_RS00055 0.14 +0.3 13,991 - MMP_RS00055 0.23 +0.3 13,994 + MMP_RS00055 0.23 +0.9 14,033 - MMP_RS00055 0.26 +0.7 14,264 - MMP_RS00055 0.40 +0.1 14,272 + MMP_RS00055 0.41 +0.1 14,283 - MMP_RS00055 0.42 -0.5 14,327 - MMP_RS00055 0.44 +0.2 14,328 + MMP_RS00055 0.44 +0.1 14,328 + MMP_RS00055 0.44 +0.9 14,334 - MMP_RS00055 0.45 +0.2 14,345 - MMP_RS00055 0.45 +0.0 14,420 - MMP_RS00055 0.50 -0.4 14,444 - MMP_RS00055 0.52 +0.2 14,448 - MMP_RS00055 0.52 +0.3 14,575 - MMP_RS00055 0.60 +0.8 14,576 + MMP_RS00055 0.60 -0.1 14,576 + MMP_RS00055 0.60 +0.4 14,576 + MMP_RS00055 0.60 +0.1 14,626 + MMP_RS00055 0.63 +0.1 14,742 - MMP_RS00055 0.71 +0.9 14,801 + MMP_RS00055 0.74 +0.6 14,801 + MMP_RS00055 0.74 +0.2 14,967 + MMP_RS00055 0.85 +0.1 15,046 - MMP_RS00055 0.90 -0.1 15,047 + MMP_RS00055 0.90 +0.1 15,131 - +0.2 15,172 - -0.2 15,173 + +0.1 15,177 - +0.1 15,177 - +1.0 15,234 + +0.3 15,237 - +0.0 15,237 - +0.1 15,238 + +0.1 15,242 - +0.1 15,242 - +0.3 15,242 - -0.8 15,246 - +0.5 15,247 + +0.2 15,247 + +0.1 15,247 + +0.6 15,253 + -0.6 15,267 + -2.4 15,279 - -0.5 15,280 + -1.5 15,515 + MMP_RS00060 0.16 +0.1 15,590 + MMP_RS00060 0.23 -2.3 16,082 + MMP_RS00060 0.69 +0.3
Or see this region's nucleotide sequence