Strain Fitness in Pantoea sp. MT58 around IAI47_14980

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,159,715	+		IAI47_14975	0.60	+0.1
3,159,716	-		IAI47_14975	0.60	-0.4
3,159,716	-		IAI47_14975	0.60	+0.8
3,159,871	+		IAI47_14975	0.73	-2.6
3,159,871	+		IAI47_14975	0.73	-1.3
3,159,871	+		IAI47_14975	0.73	+2.5
3,159,871	+		IAI47_14975	0.73	+1.4
3,159,872	-		IAI47_14975	0.73	-0.7
3,159,872	-		IAI47_14975	0.73	-0.4
3,159,872	-		IAI47_14975	0.73	-1.1
3,159,872	-		IAI47_14975	0.73	-0.2
3,159,873	+		IAI47_14975	0.73	+0.3
3,159,873	+		IAI47_14975	0.73	+1.3
3,159,873	+		IAI47_14975	0.73	-1.2
3,159,873	+		IAI47_14975	0.73	+1.3
3,159,874	-		IAI47_14975	0.73	-1.8
3,159,874	-		IAI47_14975	0.73	-1.3
3,159,991	+		IAI47_14975	0.82	-1.2
3,159,992	-		IAI47_14975	0.82	+0.3
3,160,057	+		IAI47_14975	0.87	-0.8
3,160,057	+		IAI47_14975	0.87	-0.1
3,160,058	-		IAI47_14975	0.87	-0.6
3,160,058	-		IAI47_14975	0.87	-1.8
3,160,066	+		IAI47_14975	0.88	-1.7
3,160,066	+		IAI47_14975	0.88	-1.1
3,160,067	-		IAI47_14975	0.88	-0.2
3,160,067	-		IAI47_14975	0.88	+0.3
3,160,067	-		IAI47_14975	0.88	-0.1
3,160,067	-		IAI47_14975	0.88	-2.1
3,160,067	-		IAI47_14975	0.88	-0.8
3,160,067	-		IAI47_14975	0.88	-0.5
3,160,067	-		IAI47_14975	0.88	-1.8
3,160,103	+				+0.5
3,160,109	+				+2.3
3,160,109	+				-1.7
3,160,109	+				-1.8
3,160,110	-				-0.2
3,160,110	-				-0.2
3,160,110	-				-1.6
3,160,110	-				-0.2
3,160,110	-				-0.1
3,160,122	+				+0.5
3,160,122	+				-0.1
3,160,122	+				-1.2
3,160,122	+				+0.4
3,160,123	-				+0.7
3,160,199	+				-1.0
3,160,200	-				+0.0
3,160,200	-				+1.3
3,160,200	-				+0.4
3,160,217	-				+0.4
3,160,217	-				+1.5
3,160,217	-				+0.1
3,160,239	+				-2.8
3,160,240	-				-1.8
3,160,241	+				+0.6
3,160,241	+				-1.2
3,160,241	+				+1.6
3,160,242	-				+2.1
3,160,242	-				+0.0
3,160,242	-				+0.1
3,160,242	-				+0.3
3,160,242	-				-1.2
3,160,242	-				+0.5
3,160,242	-				-0.1
3,160,242	-				+0.5
3,160,242	-				-1.0
3,160,253	-				-0.4
3,160,264	-				+0.2
3,160,421	+				-0.3
3,160,421	+				+0.3
3,160,422	-				-0.8
3,160,439	+				-0.9
3,160,449	+				-0.0
3,160,449	+				-2.0
3,160,449	+				+1.4
3,160,450	-				-1.8
3,160,450	-				-0.1
3,160,450	-				+1.3
3,160,462	+				-0.0
3,160,487	+				-0.2
3,160,487	+				-1.1
3,160,487	+				+0.2
3,160,487	+				+1.7
3,160,488	-				-0.1
3,160,488	-				+2.6
3,160,488	-				-1.5
3,160,488	-				+0.6
3,160,488	-				+0.3
3,160,488	-				+1.9
3,160,488	-				-0.3
3,160,488	-				-0.2
3,160,531	+				-0.7
3,160,596	+				+0.5
3,160,597	-				+1.9
3,160,603	+				-1.2
3,160,603	+				+0.0
3,160,604	-				-0.9
3,160,609	+				+0.5
3,160,609	+				+2.4
3,160,609	+				+0.2
3,160,609	+				+0.0
3,160,609	+				+1.3
3,160,609	+				-2.0
3,160,609	+				-1.0
3,160,609	+				+2.7
3,160,610	-				-0.6
3,160,610	-				+0.1
3,160,610	-				-0.3
3,160,610	-				+1.5
3,160,610	-				+2.2
3,160,610	-				+1.4
3,160,610	-				+0.6
3,160,610	-				+0.1
3,160,610	-				-0.4
3,160,610	-				-1.6
3,160,617	+				+0.3
3,160,617	+				+0.7
3,160,617	+				+0.5
3,160,617	+				-0.3
3,160,618	-				-2.9
3,160,627	+				-0.2
3,160,627	+				+2.0
3,160,628	-				-2.1
3,160,628	-				+0.5
3,160,670	+				-1.6
3,160,670	+				+0.9
3,160,670	+				+2.6
3,160,671	-				+1.4
3,160,671	-				-1.0
3,160,671	-				-0.5
3,160,671	-				+1.3
3,160,671	-				-0.1
3,160,705	+		IAI47_14980	0.17	+2.2
3,160,706	-		IAI47_14980	0.17	-0.2
3,160,772	+		IAI47_14980	0.43	-0.5
3,160,773	-		IAI47_14980	0.44	-0.9
3,160,773	-		IAI47_14980	0.44	-0.7
3,160,773	-		IAI47_14980	0.44	-0.4
3,160,800	+		IAI47_14980	0.54	+0.6
3,160,800	+		IAI47_14980	0.54	-1.0
3,160,800	+		IAI47_14980	0.54	+0.8
3,160,827	+		IAI47_14980	0.65	+1.9
3,160,838	+		IAI47_14980	0.69	-0.7
3,160,839	-		IAI47_14980	0.70	-2.5
3,160,839	-		IAI47_14980	0.70	-1.2
3,160,867	+		IAI47_14980	0.81	+2.1
3,160,913	-				+3.3
3,160,929	+				-2.2
3,160,929	+				+0.7
3,160,929	+				-0.4
3,160,930	-				-0.4
3,160,943	+				+1.2
3,160,944	-				-0.8
3,160,944	-				+1.9
3,160,948	+				+1.9
3,160,948	+				+0.3
3,160,949	-				+2.1
3,161,014	+		IAI47_14985	0.27	-1.1
3,161,015	-		IAI47_14985	0.27	-0.4
3,161,064	+		IAI47_14985	0.43	+1.4
3,161,064	+		IAI47_14985	0.43	+0.4
3,161,064	+		IAI47_14985	0.43	+0.2
3,161,064	+		IAI47_14985	0.43	+0.4
3,161,082	+		IAI47_14985	0.48	-2.4
3,161,082	+		IAI47_14985	0.48	-1.2
3,161,210	+		IAI47_14985	0.89	-2.5
3,161,210	+		IAI47_14985	0.89	-0.7
3,161,211	-		IAI47_14985	0.89	-2.5
3,161,211	-		IAI47_14985	0.89	-0.4
3,161,211	-		IAI47_14985	0.89	-1.6
3,161,211	-		IAI47_14985	0.89	+0.0
3,161,235	-				-0.8
3,161,306	+				-1.2
3,161,306	+				+0.8
3,161,322	+				-1.2
3,161,322	+				+0.9
3,161,322	+				+0.9
3,161,322	+				+2.8
3,161,322	+				-0.2
3,161,322	+				-2.5
3,161,322	+				-0.3
3,161,322	+				+0.5
3,161,323	-				+0.5
3,161,323	-				-1.7
3,161,323	-				+0.6
3,161,323	-				+0.9
3,161,323	-				+0.0
3,161,326	+				+0.4
3,161,326	+				-0.5
3,161,326	+				+0.0
3,161,326	+				+0.4
3,161,326	+				-0.4
3,161,326	+				-1.8
3,161,326	+				-2.2
3,161,326	+				+0.7
3,161,326	+				-0.1
3,161,326	+				-2.1
3,161,327	-				-1.0
3,161,327	-				+1.2
3,161,327	-				-0.8
3,161,327	-				+2.0
3,161,327	-				+0.6
3,161,327	-				+1.6
3,161,327	-				-0.8
3,161,327	-				+0.5
3,161,327	-				-0.6
3,161,327	-				+1.1
3,161,327	-				+1.1
3,161,327	-				-2.2
3,161,327	-				+0.4
3,161,327	-				-0.6
3,161,327	-				-0.3
3,161,327	-				+0.9
3,161,327	-				+0.0
3,161,327	-				-0.8
3,161,327	-				+1.3
3,161,327	-				-0.4
3,161,361	+				-1.1
3,161,362	-				+0.2
3,161,362	-				-2.6
3,161,362	-				+3.0
3,161,362	-				+1.4
3,161,378	-				+0.0
3,161,388	+				+1.1
3,161,389	-				+0.3
3,161,389	-				+1.0
3,161,389	-				-0.8
3,161,389	-				+0.0
3,161,389	-				+0.7
3,161,389	-				+2.2
3,161,414	+				+0.2
3,161,414	+				-1.0
3,161,415	-				+2.5
3,161,427	+				+0.3
3,161,439	+		IAI47_14990	0.12	+0.7
3,161,469	+		IAI47_14990	0.22	-0.2
3,161,469	+		IAI47_14990	0.22	-1.4
3,161,470	-		IAI47_14990	0.22	-0.4
3,161,493	+		IAI47_14990	0.30	+0.9
3,161,493	+		IAI47_14990	0.30	+0.8
3,161,493	+		IAI47_14990	0.30	-1.8
3,161,494	-		IAI47_14990	0.30	+2.5
3,161,494	-		IAI47_14990	0.30	-1.0
3,161,495	+		IAI47_14990	0.31	-0.7
3,161,496	-		IAI47_14990	0.31	-0.1
3,161,496	-		IAI47_14990	0.31	-2.7
3,161,496	-		IAI47_14990	0.31	-0.6
3,161,496	-		IAI47_14990	0.31	+3.7
3,161,560	-		IAI47_14990	0.53	+2.4
3,161,560	-		IAI47_14990	0.53	+1.5
3,161,560	-		IAI47_14990	0.53	+3.0
3,161,561	+		IAI47_14990	0.53	-0.0
3,161,561	+		IAI47_14990	0.53	-1.7
3,161,561	+		IAI47_14990	0.53	-1.3
3,161,561	+		IAI47_14990	0.53	-0.4
3,161,561	+		IAI47_14990	0.53	-1.4
3,161,561	+		IAI47_14990	0.53	-0.3
3,161,561	+		IAI47_14990	0.53	-0.8
3,161,561	+		IAI47_14990	0.53	-1.2
3,161,561	+		IAI47_14990	0.53	+0.0
3,161,562	-		IAI47_14990	0.53	+0.3
3,161,562	-		IAI47_14990	0.53	+1.8
3,161,562	-		IAI47_14990	0.53	+0.7
3,161,562	-		IAI47_14990	0.53	+3.6
3,161,562	-		IAI47_14990	0.53	+2.7
3,161,562	-		IAI47_14990	0.53	+3.1
3,161,562	-		IAI47_14990	0.53	-1.4
3,161,562	-		IAI47_14990	0.53	-1.3
3,161,671	+				-0.1
3,161,704	+				+0.5
3,161,704	+				-1.4
3,161,705	-				-0.3
3,161,705	-				-0.2
3,161,705	-				-0.6
3,161,705	-				-0.2
3,161,723	+				-0.4
3,161,724	-				+0.7
3,161,724	-				+0.8
3,161,724	-				-0.8
3,161,724	-				-2.0
3,161,724	-				-2.5
3,161,724	-				-1.3
3,161,724	-				-0.1
3,161,724	-				+0.7
3,161,724	-				-1.8
3,161,724	-				+2.3
3,161,742	-				-1.6
3,161,742	-				-0.5
3,161,771	+				+1.0
3,161,771	+				-0.3
3,161,771	+				+1.2
3,161,772	-				-0.6
3,161,772	-				-0.2
3,161,778	+				-0.7
3,161,778	+				+0.1
3,161,779	-				-0.1
3,161,798	+				-0.7
3,161,799	-				+1.5
3,161,872	-				+0.4
3,161,914	+				-0.0