Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03510 and IAI47_03515 are separated by 49 nucleotides IAI47_03515 and IAI47_03520 overlap by 4 nucleotides IAI47_03520 and IAI47_03525 overlap by 8 nucleotides
IAI47_03510: IAI47_03510 - TonB-dependent receptor, at 731,427 to 733,799
_03510
IAI47_03515: IAI47_03515 - hemin-degrading factor, at 733,849 to 734,880
_03515
IAI47_03520: IAI47_03520 - hemin ABC transporter substrate-binding protein, at 734,877 to 735,698
_03520
IAI47_03525: IAI47_03525 - iron ABC transporter permease, at 735,691 to 736,689
_03525
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 732.862 kb on - strand, within IAI47_03510 at 732.889 kb on + strand, within IAI47_03510 at 732.889 kb on + strand, within IAI47_03510 at 732.889 kb on + strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.890 kb on - strand, within IAI47_03510 at 732.939 kb on + strand, within IAI47_03510 at 732.939 kb on + strand, within IAI47_03510 at 732.939 kb on + strand, within IAI47_03510 at 732.939 kb on + strand, within IAI47_03510 at 732.940 kb on - strand, within IAI47_03510 at 732.940 kb on - strand, within IAI47_03510 at 732.940 kb on - strand, within IAI47_03510 at 732.940 kb on - strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.948 kb on + strand, within IAI47_03510 at 732.949 kb on - strand, within IAI47_03510 at 732.949 kb on - strand, within IAI47_03510 at 732.949 kb on - strand, within IAI47_03510 at 732.949 kb on - strand, within IAI47_03510 at 732.949 kb on - strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.950 kb on + strand, within IAI47_03510 at 732.951 kb on - strand, within IAI47_03510 at 732.987 kb on + strand, within IAI47_03510 at 732.987 kb on + strand, within IAI47_03510 at 732.987 kb on + strand, within IAI47_03510 at 732.987 kb on + strand, within IAI47_03510 at 732.988 kb on - strand, within IAI47_03510 at 733.014 kb on + strand, within IAI47_03510 at 733.014 kb on + strand, within IAI47_03510 at 733.014 kb on + strand, within IAI47_03510 at 733.015 kb on - strand, within IAI47_03510 at 733.015 kb on - strand, within IAI47_03510 at 733.015 kb on - strand, within IAI47_03510 at 733.032 kb on + strand, within IAI47_03510 at 733.032 kb on + strand, within IAI47_03510 at 733.032 kb on + strand, within IAI47_03510 at 733.032 kb on + strand, within IAI47_03510 at 733.033 kb on - strand, within IAI47_03510 at 733.046 kb on + strand, within IAI47_03510 at 733.046 kb on + strand, within IAI47_03510 at 733.047 kb on - strand, within IAI47_03510 at 733.080 kb on + strand, within IAI47_03510 at 733.081 kb on - strand, within IAI47_03510 at 733.081 kb on - strand, within IAI47_03510 at 733.081 kb on - strand, within IAI47_03510 at 733.081 kb on - strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.093 kb on + strand, within IAI47_03510 at 733.094 kb on - strand, within IAI47_03510 at 733.094 kb on - strand, within IAI47_03510 at 733.142 kb on + strand, within IAI47_03510 at 733.142 kb on + strand, within IAI47_03510 at 733.143 kb on - strand, within IAI47_03510 at 733.149 kb on + strand, within IAI47_03510 at 733.149 kb on + strand, within IAI47_03510 at 733.150 kb on - strand, within IAI47_03510 at 733.151 kb on + strand, within IAI47_03510 at 733.151 kb on + strand, within IAI47_03510 at 733.160 kb on + strand, within IAI47_03510 at 733.160 kb on + strand, within IAI47_03510 at 733.176 kb on + strand, within IAI47_03510 at 733.208 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.227 kb on + strand, within IAI47_03510 at 733.228 kb on - strand, within IAI47_03510 at 733.228 kb on - strand, within IAI47_03510 at 733.228 kb on - strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.236 kb on + strand, within IAI47_03510 at 733.237 kb on - strand, within IAI47_03510 at 733.237 kb on - strand, within IAI47_03510 at 733.256 kb on + strand, within IAI47_03510 at 733.263 kb on + strand, within IAI47_03510 at 733.263 kb on + strand, within IAI47_03510 at 733.263 kb on + strand, within IAI47_03510 at 733.264 kb on - strand, within IAI47_03510 at 733.264 kb on - strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.269 kb on + strand, within IAI47_03510 at 733.270 kb on - strand, within IAI47_03510 at 733.270 kb on - strand, within IAI47_03510 at 733.289 kb on + strand, within IAI47_03510 at 733.289 kb on + strand, within IAI47_03510 at 733.289 kb on + strand, within IAI47_03510 at 733.290 kb on - strand, within IAI47_03510 at 733.380 kb on + strand, within IAI47_03510 at 733.380 kb on + strand, within IAI47_03510 at 733.381 kb on - strand, within IAI47_03510 at 733.381 kb on - strand, within IAI47_03510 at 733.381 kb on - strand, within IAI47_03510 at 733.395 kb on + strand, within IAI47_03510 at 733.395 kb on + strand, within IAI47_03510 at 733.396 kb on - strand, within IAI47_03510 at 733.396 kb on - strand, within IAI47_03510 at 733.487 kb on + strand, within IAI47_03510 at 733.488 kb on - strand, within IAI47_03510 at 733.488 kb on - strand, within IAI47_03510 at 733.502 kb on + strand, within IAI47_03510 at 733.502 kb on + strand, within IAI47_03510 at 733.503 kb on - strand, within IAI47_03510 at 733.503 kb on - strand, within IAI47_03510 at 733.503 kb on - strand, within IAI47_03510 at 733.503 kb on - strand, within IAI47_03510 at 733.538 kb on + strand, within IAI47_03510 at 733.575 kb on + strand at 733.575 kb on + strand at 733.576 kb on - strand at 733.576 kb on - strand at 733.576 kb on - strand at 733.593 kb on + strand at 733.594 kb on - strand at 733.607 kb on + strand at 733.607 kb on + strand at 733.608 kb on - strand at 733.608 kb on - strand at 733.608 kb on - strand at 733.617 kb on + strand at 733.634 kb on + strand at 733.634 kb on + strand at 733.634 kb on + strand at 733.634 kb on + strand at 733.634 kb on + strand at 733.634 kb on + strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.635 kb on - strand at 733.659 kb on + strand at 733.659 kb on + strand at 733.659 kb on + strand at 733.659 kb on + strand at 733.660 kb on - strand at 733.660 kb on - strand at 733.660 kb on - strand at 733.666 kb on + strand at 733.666 kb on + strand at 733.667 kb on - strand at 733.667 kb on - strand at 733.667 kb on - strand at 733.667 kb on - strand at 733.680 kb on + strand at 733.681 kb on - strand at 733.689 kb on + strand at 733.690 kb on - strand at 733.690 kb on - strand at 733.690 kb on - strand at 733.766 kb on + strand at 733.777 kb on + strand at 733.777 kb on + strand at 733.777 kb on + strand at 733.777 kb on + strand at 733.778 kb on - strand at 733.778 kb on - strand at 733.778 kb on - strand at 733.785 kb on - strand at 733.830 kb on + strand at 733.830 kb on + strand at 733.830 kb on + strand at 733.830 kb on + strand at 733.831 kb on - strand at 733.831 kb on - strand at 733.831 kb on - strand at 733.831 kb on - strand at 733.833 kb on + strand at 733.833 kb on + strand at 733.833 kb on + strand at 733.833 kb on + strand at 733.834 kb on - strand at 733.834 kb on - strand at 733.834 kb on - strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.870 kb on + strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.871 kb on - strand at 733.881 kb on + strand at 733.881 kb on + strand at 733.881 kb on + strand at 733.881 kb on + strand at 733.903 kb on + strand at 733.903 kb on + strand at 733.904 kb on - strand at 733.904 kb on - strand at 734.046 kb on + strand, within IAI47_03515 at 734.046 kb on + strand, within IAI47_03515 at 734.047 kb on - strand, within IAI47_03515 at 734.047 kb on - strand, within IAI47_03515 at 734.052 kb on + strand, within IAI47_03515 at 734.060 kb on - strand, within IAI47_03515 at 734.060 kb on - strand, within IAI47_03515 at 734.060 kb on - strand, within IAI47_03515 at 734.060 kb on - strand, within IAI47_03515 at 734.066 kb on + strand, within IAI47_03515 at 734.066 kb on + strand, within IAI47_03515 at 734.066 kb on + strand, within IAI47_03515 at 734.086 kb on + strand, within IAI47_03515 at 734.086 kb on + strand, within IAI47_03515 at 734.086 kb on + strand, within IAI47_03515 at 734.086 kb on + strand, within IAI47_03515 at 734.087 kb on - strand, within IAI47_03515 at 734.087 kb on - strand, within IAI47_03515 at 734.087 kb on - strand, within IAI47_03515 at 734.127 kb on + strand, within IAI47_03515 at 734.127 kb on + strand, within IAI47_03515 at 734.128 kb on - strand, within IAI47_03515 at 734.128 kb on - strand, within IAI47_03515 at 734.220 kb on + strand, within IAI47_03515 at 734.220 kb on + strand, within IAI47_03515 at 734.221 kb on - strand, within IAI47_03515 at 734.263 kb on + strand, within IAI47_03515 at 734.263 kb on + strand, within IAI47_03515 at 734.316 kb on + strand, within IAI47_03515 at 734.316 kb on + strand, within IAI47_03515 at 734.449 kb on - strand, within IAI47_03515 at 734.540 kb on + strand, within IAI47_03515 at 734.540 kb on + strand, within IAI47_03515 at 734.540 kb on + strand, within IAI47_03515 at 734.540 kb on + strand, within IAI47_03515 at 734.541 kb on - strand, within IAI47_03515 at 734.598 kb on + strand, within IAI47_03515 at 734.714 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.746 kb on - strand, within IAI47_03515 at 734.794 kb on + strand at 734.794 kb on + strand at 734.795 kb on - strand at 734.815 kb on - strand at 734.896 kb on + strand at 734.896 kb on + strand at 734.897 kb on - strand at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.973 kb on + strand, within IAI47_03520 at 734.973 kb on + strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.998 kb on + strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 735.060 kb on + strand, within IAI47_03520 at 735.060 kb on + strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.228 kb on - strand, within IAI47_03520 at 735.228 kb on - strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.451 kb on - strand, within IAI47_03520 at 735.503 kb on - strand, within IAI47_03520 at 735.557 kb on - strand, within IAI47_03520 at 735.641 kb on + strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.696 kb on + strand at 735.697 kb on - strand at 735.703 kb on - strand at 735.703 kb on - strand at 735.800 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 732,862 - IAI47_03510 0.60 +1.5 732,889 + IAI47_03510 0.62 +0.2 732,889 + IAI47_03510 0.62 -0.0 732,889 + IAI47_03510 0.62 -1.8 732,890 - IAI47_03510 0.62 +1.4 732,890 - IAI47_03510 0.62 +0.9 732,890 - IAI47_03510 0.62 +1.1 732,890 - IAI47_03510 0.62 -0.7 732,890 - IAI47_03510 0.62 +0.7 732,890 - IAI47_03510 0.62 +0.6 732,890 - IAI47_03510 0.62 -0.1 732,939 + IAI47_03510 0.64 +0.3 732,939 + IAI47_03510 0.64 -0.9 732,939 + IAI47_03510 0.64 -0.9 732,939 + IAI47_03510 0.64 +0.3 732,940 - IAI47_03510 0.64 +1.7 732,940 - IAI47_03510 0.64 -2.2 732,940 - IAI47_03510 0.64 +1.7 732,940 - IAI47_03510 0.64 +0.9 732,948 + IAI47_03510 0.64 +0.7 732,948 + IAI47_03510 0.64 -0.7 732,948 + IAI47_03510 0.64 +1.5 732,948 + IAI47_03510 0.64 -1.9 732,948 + IAI47_03510 0.64 -3.4 732,948 + IAI47_03510 0.64 -0.3 732,948 + IAI47_03510 0.64 +0.5 732,949 - IAI47_03510 0.64 -1.1 732,949 - IAI47_03510 0.64 -0.0 732,949 - IAI47_03510 0.64 +1.2 732,949 - IAI47_03510 0.64 +0.3 732,949 - IAI47_03510 0.64 -2.9 732,950 + IAI47_03510 0.64 +0.9 732,950 + IAI47_03510 0.64 -0.1 732,950 + IAI47_03510 0.64 +0.8 732,950 + IAI47_03510 0.64 -0.5 732,950 + IAI47_03510 0.64 +0.9 732,950 + IAI47_03510 0.64 +1.1 732,951 - IAI47_03510 0.64 +2.4 732,987 + IAI47_03510 0.66 +3.8 732,987 + IAI47_03510 0.66 -1.9 732,987 + IAI47_03510 0.66 -1.9 732,987 + IAI47_03510 0.66 -2.7 732,988 - IAI47_03510 0.66 -1.1 733,014 + IAI47_03510 0.67 -1.1 733,014 + IAI47_03510 0.67 +3.4 733,014 + IAI47_03510 0.67 -1.7 733,015 - IAI47_03510 0.67 -1.7 733,015 - IAI47_03510 0.67 +1.3 733,015 - IAI47_03510 0.67 +1.3 733,032 + IAI47_03510 0.68 +1.3 733,032 + IAI47_03510 0.68 +0.6 733,032 + IAI47_03510 0.68 -0.0 733,032 + IAI47_03510 0.68 -0.7 733,033 - IAI47_03510 0.68 -0.7 733,046 + IAI47_03510 0.68 -1.2 733,046 + IAI47_03510 0.68 +1.1 733,047 - IAI47_03510 0.68 -0.6 733,080 + IAI47_03510 0.70 -1.1 733,081 - IAI47_03510 0.70 -1.7 733,081 - IAI47_03510 0.70 -0.9 733,081 - IAI47_03510 0.70 +0.7 733,081 - IAI47_03510 0.70 +0.4 733,093 + IAI47_03510 0.70 -0.4 733,093 + IAI47_03510 0.70 -1.7 733,093 + IAI47_03510 0.70 +1.8 733,093 + IAI47_03510 0.70 +0.7 733,093 + IAI47_03510 0.70 +0.2 733,093 + IAI47_03510 0.70 -0.3 733,094 - IAI47_03510 0.70 +1.7 733,094 - IAI47_03510 0.70 +0.4 733,142 + IAI47_03510 0.72 +0.1 733,142 + IAI47_03510 0.72 +2.4 733,143 - IAI47_03510 0.72 +0.2 733,149 + IAI47_03510 0.73 +2.7 733,149 + IAI47_03510 0.73 +0.7 733,150 - IAI47_03510 0.73 -0.7 733,151 + IAI47_03510 0.73 +2.5 733,151 + IAI47_03510 0.73 -2.3 733,160 + IAI47_03510 0.73 -1.2 733,160 + IAI47_03510 0.73 +0.8 733,176 + IAI47_03510 0.74 +0.5 733,208 + IAI47_03510 0.75 -0.7 733,227 + IAI47_03510 0.76 +2.7 733,227 + IAI47_03510 0.76 +2.8 733,227 + IAI47_03510 0.76 -1.7 733,227 + IAI47_03510 0.76 -1.0 733,227 + IAI47_03510 0.76 -1.5 733,227 + IAI47_03510 0.76 +1.7 733,227 + IAI47_03510 0.76 -0.7 733,228 - IAI47_03510 0.76 -2.3 733,228 - IAI47_03510 0.76 -0.6 733,228 - 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IAI47_03525 0.14 +0.4 735,826 - IAI47_03525 0.14 +0.1 735,826 - IAI47_03525 0.14 -0.3 735,867 - IAI47_03525 0.18 -0.2 735,867 - IAI47_03525 0.18 +1.3 735,867 - IAI47_03525 0.18 -1.5
Or see this region's nucleotide sequence