Strain Fitness in Pantoea sp. MT58 around IAI47_00480

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
107,481	+		IAI47_00470	0.83	+0.7
107,481	+		IAI47_00470	0.83	-0.8
107,481	+		IAI47_00470	0.83	+0.9
107,482	-		IAI47_00470	0.83	+0.0
107,482	-		IAI47_00470	0.83	-1.1
107,528	+				+1.2
107,528	+				-0.0
107,529	-				+1.4
107,529	-				+1.8
107,535	+				-0.2
107,544	+				-3.0
107,545	-				-0.1
107,545	-				+0.8
107,573	+				+2.8
107,573	+				-0.4
107,573	+				+0.0
107,573	+				-0.2
107,574	-				-0.3
107,574	-				-2.0
107,578	+				+0.4
107,578	+				+0.2
107,578	+				+0.3
107,578	+				+1.1
107,578	+				-1.2
107,578	+				+0.4
107,578	+				-2.3
107,579	-				+0.1
107,579	-				-0.0
107,579	-				-0.6
107,579	-				+1.4
107,579	-				+1.3
107,642	+				+1.5
107,686	-		IAI47_00475	0.12	-0.6
107,695	+		IAI47_00475	0.13	-2.6
107,695	+		IAI47_00475	0.13	+0.2
107,695	+		IAI47_00475	0.13	+0.8
107,695	+		IAI47_00475	0.13	-3.0
107,695	+		IAI47_00475	0.13	-1.1
107,695	+		IAI47_00475	0.13	+0.4
107,695	+		IAI47_00475	0.13	+2.2
107,695	+		IAI47_00475	0.13	-0.1
107,696	-		IAI47_00475	0.13	+0.0
107,696	-		IAI47_00475	0.13	-0.0
107,696	-		IAI47_00475	0.13	-0.2
107,696	-		IAI47_00475	0.13	+0.2
107,696	-		IAI47_00475	0.13	+0.7
107,696	-		IAI47_00475	0.13	-1.5
107,696	-		IAI47_00475	0.13	-0.5
107,696	-		IAI47_00475	0.13	-0.4
107,696	-		IAI47_00475	0.13	-1.3
107,696	-		IAI47_00475	0.13	+0.8
107,696	-		IAI47_00475	0.13	+1.0
107,696	-		IAI47_00475	0.13	-0.7
107,724	+		IAI47_00475	0.16	-2.5
107,725	-		IAI47_00475	0.16	-0.4
107,725	-		IAI47_00475	0.16	+1.8
107,787	-		IAI47_00475	0.23	-3.1
107,826	+		IAI47_00475	0.28	-2.1
107,826	+		IAI47_00475	0.28	+0.9
107,826	+		IAI47_00475	0.28	+2.0
107,827	-		IAI47_00475	0.28	+0.7
107,827	-		IAI47_00475	0.28	+1.9
107,827	-		IAI47_00475	0.28	-0.6
107,842	+		IAI47_00475	0.30	-1.9
107,842	+		IAI47_00475	0.30	+0.2
107,842	+		IAI47_00475	0.30	-0.1
107,842	+		IAI47_00475	0.30	-2.4
107,862	+		IAI47_00475	0.32	+1.3
107,863	-		IAI47_00475	0.32	-2.0
107,867	+		IAI47_00475	0.32	+1.7
107,867	+		IAI47_00475	0.32	-2.5
107,867	+		IAI47_00475	0.32	-0.5
107,867	+		IAI47_00475	0.32	-1.2
107,868	-		IAI47_00475	0.33	-0.2
107,868	-		IAI47_00475	0.33	-1.5
107,901	+		IAI47_00475	0.36	+1.2
107,902	-		IAI47_00475	0.36	+1.0
107,902	-		IAI47_00475	0.36	-2.4
107,915	+		IAI47_00475	0.38	-1.4
107,915	+		IAI47_00475	0.38	+1.8
107,916	-		IAI47_00475	0.38	-1.9
107,916	-		IAI47_00475	0.38	+0.2
107,987	-		IAI47_00475	0.46	+1.1
107,987	-		IAI47_00475	0.46	-0.8
107,987	-		IAI47_00475	0.46	+1.0
108,001	+		IAI47_00475	0.48	-1.0
108,001	+		IAI47_00475	0.48	+2.4
108,001	+		IAI47_00475	0.48	+0.0
108,061	+		IAI47_00475	0.55	+0.6
108,061	+		IAI47_00475	0.55	+1.4
108,061	+		IAI47_00475	0.55	+1.0
108,062	-		IAI47_00475	0.55	+1.0
108,062	-		IAI47_00475	0.55	-0.2
108,062	-		IAI47_00475	0.55	-0.8
108,084	+		IAI47_00475	0.57	+2.4
108,084	+		IAI47_00475	0.57	-1.6
108,084	+		IAI47_00475	0.57	+1.1
108,084	+		IAI47_00475	0.57	-0.3
108,085	-		IAI47_00475	0.57	-0.5
108,085	-		IAI47_00475	0.57	+0.4
108,085	-		IAI47_00475	0.57	-0.5
108,169	+		IAI47_00475	0.67	+0.0
108,169	+		IAI47_00475	0.67	+0.1
108,169	+		IAI47_00475	0.67	-1.2
108,170	-		IAI47_00475	0.67	-2.4
108,170	-		IAI47_00475	0.67	+0.1
108,170	-		IAI47_00475	0.67	-2.6
108,271	+		IAI47_00475	0.79	-0.7
108,271	+		IAI47_00475	0.79	+0.3
108,271	+		IAI47_00475	0.79	-0.4
108,271	+		IAI47_00475	0.79	-0.8
108,271	+		IAI47_00475	0.79	+1.6
108,271	+		IAI47_00475	0.79	-0.3
108,271	+		IAI47_00475	0.79	-2.2
108,271	+		IAI47_00475	0.79	-0.5
108,272	-		IAI47_00475	0.79	-0.8
108,272	-		IAI47_00475	0.79	+0.5
108,272	-		IAI47_00475	0.79	+2.9
108,272	-		IAI47_00475	0.79	-0.6
108,276	+		IAI47_00475	0.79	+0.1
108,276	+		IAI47_00475	0.79	+0.0
108,276	+		IAI47_00475	0.79	+1.7
108,276	+		IAI47_00475	0.79	-2.8
108,276	+		IAI47_00475	0.79	-0.7
108,276	+		IAI47_00475	0.79	-0.3
108,276	+		IAI47_00475	0.79	-0.8
108,276	+		IAI47_00475	0.79	-0.7
108,276	+		IAI47_00475	0.79	-1.0
108,276	+		IAI47_00475	0.79	+0.2
108,277	-		IAI47_00475	0.79	-0.3
108,277	-		IAI47_00475	0.79	+1.3
108,277	-		IAI47_00475	0.79	+0.5
108,277	-		IAI47_00475	0.79	+0.6
108,277	-		IAI47_00475	0.79	+0.2
108,277	-		IAI47_00475	0.79	-2.4
108,277	-		IAI47_00475	0.79	-1.8
108,277	-		IAI47_00475	0.79	-3.0
108,279	+		IAI47_00475	0.80	-3.0
108,279	+		IAI47_00475	0.80	+0.5
108,279	+		IAI47_00475	0.80	+2.1
108,279	+		IAI47_00475	0.80	-0.9
108,279	+		IAI47_00475	0.80	+0.0
108,279	+		IAI47_00475	0.80	-0.3
108,279	+		IAI47_00475	0.80	-1.2
108,279	+		IAI47_00475	0.80	+0.8
108,279	+		IAI47_00475	0.80	-1.8
108,279	+		IAI47_00475	0.80	+0.4
108,279	+		IAI47_00475	0.80	+0.6
108,279	+		IAI47_00475	0.80	+1.4
108,279	+		IAI47_00475	0.80	+0.8
108,280	-		IAI47_00475	0.80	+0.1
108,280	-		IAI47_00475	0.80	-1.9
108,280	-		IAI47_00475	0.80	-1.5
108,280	-		IAI47_00475	0.80	-0.5
108,280	-		IAI47_00475	0.80	-1.2
108,280	-		IAI47_00475	0.80	+1.2
108,280	-		IAI47_00475	0.80	+0.3
108,280	-		IAI47_00475	0.80	+0.0
108,280	-		IAI47_00475	0.80	-1.4
108,280	-		IAI47_00475	0.80	-1.2
108,280	-		IAI47_00475	0.80	-1.1
108,280	-		IAI47_00475	0.80	-1.8
108,280	-		IAI47_00475	0.80	+2.1
108,280	-		IAI47_00475	0.80	-0.7
108,280	-		IAI47_00475	0.80	-1.7
108,280	-		IAI47_00475	0.80	-0.5
108,280	-		IAI47_00475	0.80	-2.0
108,292	+		IAI47_00475	0.81	+0.3
108,292	+		IAI47_00475	0.81	-1.3
108,292	+		IAI47_00475	0.81	-1.5
108,293	-		IAI47_00475	0.81	-1.6
108,293	-		IAI47_00475	0.81	-1.8
108,293	-		IAI47_00475	0.81	-1.6
108,293	-		IAI47_00475	0.81	+0.3
108,304	+		IAI47_00475	0.82	-0.2
108,304	+		IAI47_00475	0.82	-0.8
108,305	-		IAI47_00475	0.83	-0.4
108,305	-		IAI47_00475	0.83	-0.8
108,305	-		IAI47_00475	0.83	+0.5
108,305	-		IAI47_00475	0.83	-0.3
108,312	-		IAI47_00475	0.83	-0.7
108,346	+		IAI47_00475	0.87	-1.8
108,347	-		IAI47_00475	0.87	-1.5
108,360	+		IAI47_00475	0.89	+1.3
108,360	+		IAI47_00475	0.89	+0.4
108,360	+		IAI47_00475	0.89	+1.5
108,360	+		IAI47_00475	0.89	+1.2
108,360	+		IAI47_00475	0.89	+1.4
108,360	+		IAI47_00475	0.89	-2.6
108,360	+		IAI47_00475	0.89	-0.6
108,360	+		IAI47_00475	0.89	+1.0
108,360	+		IAI47_00475	0.89	-2.3
108,361	-		IAI47_00475	0.89	-0.1
108,361	-		IAI47_00475	0.89	-0.8
108,361	-		IAI47_00475	0.89	-0.7
108,361	-		IAI47_00475	0.89	-0.6
108,383	+				+0.1
108,384	-				+0.8
108,384	-				-0.4
108,384	-				-0.2
108,384	-				+1.0
108,532	+		IAI47_00480	0.18	-0.4
108,533	-		IAI47_00480	0.18	-1.2
108,550	+		IAI47_00480	0.22	-0.4
108,598	+		IAI47_00480	0.33	+1.5
108,598	+		IAI47_00480	0.33	+0.1
108,598	+		IAI47_00480	0.33	-2.9
108,599	-		IAI47_00480	0.33	-2.3
108,618	-		IAI47_00480	0.38	-0.6
108,689	+		IAI47_00480	0.54	-0.7
108,690	-		IAI47_00480	0.54	+0.8
108,690	-		IAI47_00480	0.54	-1.5
108,768	+		IAI47_00480	0.72	-0.8
108,768	+		IAI47_00480	0.72	-1.8
108,769	-		IAI47_00480	0.72	-2.7
108,769	-		IAI47_00480	0.72	-1.3
108,769	-		IAI47_00480	0.72	+0.5
108,774	+		IAI47_00480	0.73	-2.3
108,774	+		IAI47_00480	0.73	-0.2
108,774	+		IAI47_00480	0.73	-3.1
108,775	-		IAI47_00480	0.74	+1.8
108,775	-		IAI47_00480	0.74	+0.3
108,775	-		IAI47_00480	0.74	-3.3
108,806	+		IAI47_00480	0.81	+0.6
108,807	-		IAI47_00480	0.81	-1.5
108,807	-		IAI47_00480	0.81	-0.9
108,807	-		IAI47_00480	0.81	+1.2
108,807	-		IAI47_00480	0.81	+1.3
108,807	-		IAI47_00480	0.81	+0.8
108,807	-		IAI47_00480	0.81	+0.2
108,809	+		IAI47_00480	0.81	-0.2
108,810	-		IAI47_00480	0.82	+0.7
108,836	+		IAI47_00480	0.87	-3.9
108,836	+		IAI47_00480	0.87	-1.8
108,836	+		IAI47_00480	0.87	-0.3
108,836	+		IAI47_00480	0.87	-0.5
108,836	+		IAI47_00480	0.87	-0.0
108,836	+		IAI47_00480	0.87	+0.0
108,837	-		IAI47_00480	0.88	-0.8
108,837	-		IAI47_00480	0.88	-2.1
108,837	-		IAI47_00480	0.88	+0.8
108,837	-		IAI47_00480	0.88	-2.9
108,837	-		IAI47_00480	0.88	+0.8
108,837	-		IAI47_00480	0.88	+0.5
108,837	-		IAI47_00480	0.88	-2.0
108,837	-		IAI47_00480	0.88	+0.9
108,837	-		IAI47_00480	0.88	-1.6
108,837	-		IAI47_00480	0.88	+1.2
108,837	-		IAI47_00480	0.88	+2.4
108,837	-		IAI47_00480	0.88	+0.3
108,922	+				-1.9
108,922	+				-1.7
108,922	+				-0.2
108,922	+				+0.8
108,922	+				-0.8
108,922	+				-0.4
108,922	+				+0.2
108,922	+				+1.2
108,922	+				-0.4
108,922	+				+0.5
108,922	+				+1.6
108,922	+				-0.6
108,923	-				+0.6
108,923	-				-1.4
108,923	-				+1.1
108,923	-				-0.3
108,923	-				+1.8
108,923	-				-2.5
108,923	-				-0.6
108,923	-				+0.2
108,923	-				-0.9
108,944	+				+0.7
108,944	+				+1.0
108,944	+				-1.0
108,944	+				+2.0
108,944	+				-0.2
108,944	+				-1.3
108,944	+				+1.4
108,944	+				-1.8
108,944	+				-0.6
108,944	+				-3.2
108,944	+				+2.1
108,944	+				-1.3
108,944	+				+0.5
108,944	+				+0.7
108,944	+				-0.3
108,944	+				+1.4
108,944	+				+0.8
108,945	-				-0.5
108,945	-				+1.4
108,945	-				+1.2
108,945	-				+0.2
108,945	-				-0.3
108,945	-				+0.9
108,945	-				-0.3
108,945	-				-1.3
108,945	-				+0.3
108,945	-				-1.5
108,945	-				+1.0
108,945	-				+0.0
108,948	+				+0.3
108,950	+				-1.8
108,950	+				-1.2
108,950	+				-0.5
108,950	+				-2.3
108,951	-				+1.7
108,951	-				+0.9
108,951	-				-2.2
108,951	-				+0.5
108,951	-				-0.4
108,988	+				-1.3
108,988	+				-0.9
108,988	+				+0.2
108,988	+				-1.7
108,989	-				+0.1
108,989	-				-2.8
108,989	-				-0.4
108,991	-				-0.9
108,992	+				+1.5
108,992	+				+2.6
108,992	+				+1.7
108,992	+				+0.2
108,992	+				+0.0
108,992	+				-0.2
108,992	+				+0.6
108,992	+				-0.1
108,992	+				+1.4
108,992	+				+0.4
108,992	+				-2.0
108,992	+				+0.6
108,992	+				+0.3
108,993	-				+0.6
108,993	-				-0.4
108,993	-				+0.1
108,993	-				-0.5
108,993	-				+2.1
108,993	-				+0.1
108,993	-				+3.2
108,993	-				+1.3
108,993	-				+1.1
108,993	-				+0.8
108,993	-				+0.9
108,993	-				+0.8
108,993	-				+0.1
108,993	-				+0.5
108,995	+				-0.8
108,995	+				-0.5
108,995	+				-0.1
108,996	-				-1.6
108,996	-				-0.6
108,996	-				+0.6
109,017	+				+2.8
109,017	+				+0.5
109,017	+				+0.6
109,017	+				+1.0
109,017	+				+1.3
109,017	+				+0.4
109,017	+				-0.8
109,017	+				-1.2
109,018	-				+0.2
109,018	-				-0.0
109,018	-				-0.2
109,018	-				+0.4
109,018	-				+1.1
109,018	-				-0.1
109,021	+				+0.8
109,021	+				-0.6
109,021	+				-1.1
109,021	+				-0.8
109,021	+				+1.6
109,021	+				-1.6
109,022	-				-0.4
109,022	-				-1.0
109,022	-				-2.6
109,022	-				-1.9
109,022	-				+1.5
109,130	+		IAI47_00485	0.19	+1.8
109,130	+		IAI47_00485	0.19	-0.3
109,130	+		IAI47_00485	0.19	+0.4
109,131	-		IAI47_00485	0.19	-0.5
109,134	+		IAI47_00485	0.20	-2.6
109,135	+		IAI47_00485	0.20	-1.0
109,135	+		IAI47_00485	0.20	+1.0
109,135	+		IAI47_00485	0.20	+0.7
109,135	+		IAI47_00485	0.20	-2.6
109,136	-		IAI47_00485	0.20	-1.1
109,136	-		IAI47_00485	0.20	+0.5
109,136	-		IAI47_00485	0.20	-1.2
109,136	-		IAI47_00485	0.20	-0.0
109,209	+		IAI47_00485	0.28	+0.9
109,234	-		IAI47_00485	0.30	-1.8
109,252	+		IAI47_00485	0.32	-0.8
109,252	+		IAI47_00485	0.32	+2.2
109,252	+		IAI47_00485	0.32	-2.3
109,253	-		IAI47_00485	0.32	+1.0
109,253	-		IAI47_00485	0.32	+1.1
109,268	-		IAI47_00485	0.34	-2.2
109,300	+		IAI47_00485	0.37	-2.3
109,310	+		IAI47_00485	0.38	+1.5
109,310	+		IAI47_00485	0.38	+1.5
109,310	+		IAI47_00485	0.38	+1.5
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109,331	-		IAI47_00485	0.41	+0.0
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109,450	+		IAI47_00485	0.53	-1.9
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109,481	-		IAI47_00485	0.56	-1.0
109,611	+		IAI47_00485	0.70	-0.1
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109,645	+		IAI47_00485	0.74	+0.1
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109,670	+		IAI47_00485	0.76	-2.2
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