Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4120

Experiment: Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4118 and Ga0059261_4119 are separated by 13 nucleotidesGa0059261_4119 and Ga0059261_4120 overlap by 1 nucleotidesGa0059261_4120 and Ga0059261_4121 overlap by 4 nucleotides Ga0059261_4118: Ga0059261_4118 - Glycerophosphoryl diester phosphodiesterase, at 4,275,179 to 4,276,756 _4118 Ga0059261_4119: Ga0059261_4119 - Uracil-DNA glycosylase (EC 3.2.2.-), at 4,276,770 to 4,277,630 _4119 Ga0059261_4120: Ga0059261_4120 - Stress responsive A/B Barrel Domain, at 4,277,630 to 4,277,965 _4120 Ga0059261_4121: Ga0059261_4121 - Choline dehydrogenase and related flavoproteins, at 4,277,962 to 4,279,707 _4121 Position (kb) 4277 4278Strain fitness (log2 ratio) -2 -1 0 1 2at 4276.681 kb on + strandat 4276.683 kb on + strandat 4276.684 kb on - strandat 4276.846 kb on + strandat 4276.865 kb on + strand, within Ga0059261_4119at 4276.865 kb on + strand, within Ga0059261_4119at 4277.054 kb on + strand, within Ga0059261_4119at 4277.152 kb on + strand, within Ga0059261_4119at 4277.153 kb on - strand, within Ga0059261_4119at 4277.248 kb on + strand, within Ga0059261_4119at 4277.249 kb on - strand, within Ga0059261_4119at 4277.249 kb on - strand, within Ga0059261_4119at 4277.365 kb on + strand, within Ga0059261_4119at 4277.366 kb on - strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.600 kb on - strandat 4277.770 kb on + strand, within Ga0059261_4120at 4277.935 kb on - strandat 4277.935 kb on - strandat 4277.935 kb on - strandat 4278.033 kb on - strandat 4278.104 kb on + strandat 4278.104 kb on + strandat 4278.104 kb on + strandat 4278.104 kb on + strandat 4278.104 kb on + strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.105 kb on - strandat 4278.261 kb on + strand, within Ga0059261_4121at 4278.284 kb on + strand, within Ga0059261_4121at 4278.284 kb on + strand, within Ga0059261_4121at 4278.285 kb on - strand, within Ga0059261_4121at 4278.305 kb on + strand, within Ga0059261_4121at 4278.305 kb on + strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.306 kb on - strand, within Ga0059261_4121at 4278.320 kb on + strand, within Ga0059261_4121at 4278.320 kb on + strand, within Ga0059261_4121at 4278.320 kb on + strand, within Ga0059261_4121at 4278.321 kb on - strand, within Ga0059261_4121at 4278.321 kb on - strand, within Ga0059261_4121at 4278.321 kb on - strand, within Ga0059261_4121at 4278.323 kb on + strandat 4278.323 kb on + strand, within Ga0059261_4121at 4278.323 kb on + strand, within Ga0059261_4121at 4278.323 kb on + strand, within Ga0059261_4121at 4278.323 kb on + strand, within Ga0059261_4121at 4278.323 kb on + strand, within Ga0059261_4121at 4278.323 kb on + strand, within Ga0059261_4121at 4278.324 kb on - strand, within Ga0059261_4121at 4278.324 kb on - strand, within Ga0059261_4121at 4278.347 kb on + strand, within Ga0059261_4121at 4278.407 kb on + strand, within Ga0059261_4121at 4278.407 kb on + strand, within Ga0059261_4121at 4278.407 kb on + strandat 4278.520 kb on - strand, within Ga0059261_4121at 4278.530 kb on + strand, within Ga0059261_4121at 4278.531 kb on - strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.569 kb on + strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.570 kb on - strand, within Ga0059261_4121at 4278.583 kb on - strand, within Ga0059261_4121at 4278.623 kb on + strand, within Ga0059261_4121at 4278.623 kb on + strand, within Ga0059261_4121at 4278.623 kb on + strand, within Ga0059261_4121at 4278.624 kb on - strand, within Ga0059261_4121at 4278.624 kb on - strandat 4278.624 kb on - strand, within Ga0059261_4121at 4278.624 kb on - strand, within Ga0059261_4121at 4278.624 kb on - strand, within Ga0059261_4121at 4278.668 kb on + strand, within Ga0059261_4121at 4278.669 kb on - strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.674 kb on + strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.675 kb on - strand, within Ga0059261_4121at 4278.743 kb on + strand, within Ga0059261_4121at 4278.744 kb on - strand, within Ga0059261_4121at 4278.744 kb on - strand, within Ga0059261_4121at 4278.744 kb on - strand, within Ga0059261_4121at 4278.744 kb on - strand, within Ga0059261_4121at 4278.752 kb on + strand, within Ga0059261_4121at 4278.752 kb on + strand, within Ga0059261_4121at 4278.752 kb on + strand, within Ga0059261_4121at 4278.752 kb on + strand, within Ga0059261_4121at 4278.752 kb on + strand, within Ga0059261_4121at 4278.753 kb on - strandat 4278.753 kb on - strand, within Ga0059261_4121at 4278.753 kb on - strand, within Ga0059261_4121at 4278.753 kb on - strand, within Ga0059261_4121at 4278.797 kb on + strand, within Ga0059261_4121at 4278.797 kb on + strand, within Ga0059261_4121at 4278.797 kb on + strandat 4278.798 kb on - strand, within Ga0059261_4121at 4278.798 kb on - strand, within Ga0059261_4121at 4278.798 kb on - strand, within Ga0059261_4121at 4278.885 kb on - strand, within Ga0059261_4121at 4278.885 kb on - strand, within Ga0059261_4121at 4278.885 kb on - strand, within Ga0059261_4121at 4278.885 kb on - strand, within Ga0059261_4121at 4278.885 kb on - strand, within Ga0059261_4121

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml
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4,276,681 + -0.7
4,276,683 + +1.1
4,276,684 - +0.1
4,276,846 + +0.1
4,276,865 + Ga0059261_4119 0.11 +0.5
4,276,865 + Ga0059261_4119 0.11 +0.6
4,277,054 + Ga0059261_4119 0.33 -0.3
4,277,152 + Ga0059261_4119 0.44 -2.0
4,277,153 - Ga0059261_4119 0.44 +0.4
4,277,248 + Ga0059261_4119 0.56 -0.2
4,277,249 - Ga0059261_4119 0.56 +1.7
4,277,249 - Ga0059261_4119 0.56 -0.4
4,277,365 + Ga0059261_4119 0.69 +0.1
4,277,366 - Ga0059261_4119 0.69 +0.0
4,277,432 + Ga0059261_4119 0.77 -0.1
4,277,432 + Ga0059261_4119 0.77 -0.0
4,277,432 + Ga0059261_4119 0.77 +0.1
4,277,433 - Ga0059261_4119 0.77 +0.2
4,277,433 - Ga0059261_4119 0.77 +0.5
4,277,433 - Ga0059261_4119 0.77 -0.6
4,277,503 + Ga0059261_4119 0.85 +0.0
4,277,503 + Ga0059261_4119 0.85 -0.3
4,277,503 + Ga0059261_4119 0.85 -0.8
4,277,504 - Ga0059261_4119 0.85 +0.5
4,277,504 - Ga0059261_4119 0.85 -0.6
4,277,504 - Ga0059261_4119 0.85 +0.8
4,277,504 - Ga0059261_4119 0.85 -0.1
4,277,599 + +1.0
4,277,599 + -0.4
4,277,599 + +0.3
4,277,599 + +0.7
4,277,600 - +0.2
4,277,770 + Ga0059261_4120 0.42 +0.6
4,277,935 - -1.2
4,277,935 - -0.1
4,277,935 - -0.3
4,278,033 - -1.0
4,278,104 + +0.4
4,278,104 + +0.5
4,278,104 + -1.5
4,278,104 + -0.2
4,278,104 + +0.5
4,278,105 - -0.1
4,278,105 - -0.3
4,278,105 - -0.6
4,278,105 - -0.6
4,278,105 - -1.1
4,278,105 - -1.5
4,278,105 - -0.2
4,278,105 - +0.0
4,278,105 - +0.2
4,278,261 + Ga0059261_4121 0.17 +0.2
4,278,284 + Ga0059261_4121 0.18 +0.3
4,278,284 + Ga0059261_4121 0.18 -0.1
4,278,285 - Ga0059261_4121 0.18 +0.1
4,278,305 + Ga0059261_4121 0.20 +0.2
4,278,305 + Ga0059261_4121 0.20 +0.7
4,278,306 - Ga0059261_4121 0.20 +0.0
4,278,306 - Ga0059261_4121 0.20 +0.1
4,278,306 - Ga0059261_4121 0.20 -0.3
4,278,306 - Ga0059261_4121 0.20 +0.6
4,278,306 - Ga0059261_4121 0.20 +0.6
4,278,306 - Ga0059261_4121 0.20 -1.3
4,278,320 + Ga0059261_4121 0.21 +0.2
4,278,320 + Ga0059261_4121 0.21 -0.4
4,278,320 + Ga0059261_4121 0.21 -0.5
4,278,321 - Ga0059261_4121 0.21 +0.2
4,278,321 - Ga0059261_4121 0.21 -0.0
4,278,321 - Ga0059261_4121 0.21 +0.7
4,278,323 + +0.7
4,278,323 + Ga0059261_4121 0.21 +0.4
4,278,323 + Ga0059261_4121 0.21 -0.1
4,278,323 + Ga0059261_4121 0.21 +0.5
4,278,323 + Ga0059261_4121 0.21 -0.1
4,278,323 + Ga0059261_4121 0.21 -0.6
4,278,323 + Ga0059261_4121 0.21 +0.4
4,278,324 - Ga0059261_4121 0.21 -0.0
4,278,324 - Ga0059261_4121 0.21 -0.3
4,278,347 + Ga0059261_4121 0.22 -0.5
4,278,407 + Ga0059261_4121 0.25 +1.9
4,278,407 + Ga0059261_4121 0.25 +0.4
4,278,407 + +0.7
4,278,520 - Ga0059261_4121 0.32 +0.1
4,278,530 + Ga0059261_4121 0.33 -0.3
4,278,531 - Ga0059261_4121 0.33 +0.3
4,278,569 + Ga0059261_4121 0.35 +0.2
4,278,569 + Ga0059261_4121 0.35 -0.2
4,278,569 + Ga0059261_4121 0.35 -0.7
4,278,569 + Ga0059261_4121 0.35 +2.1
4,278,569 + Ga0059261_4121 0.35 +0.5
4,278,569 + Ga0059261_4121 0.35 +0.0
4,278,570 - Ga0059261_4121 0.35 +0.2
4,278,570 - Ga0059261_4121 0.35 -0.0
4,278,570 - Ga0059261_4121 0.35 +0.0
4,278,570 - Ga0059261_4121 0.35 +0.1
4,278,570 - Ga0059261_4121 0.35 +0.3
4,278,570 - Ga0059261_4121 0.35 -0.3
4,278,583 - Ga0059261_4121 0.36 -0.1
4,278,623 + Ga0059261_4121 0.38 +1.3
4,278,623 + Ga0059261_4121 0.38 -0.1
4,278,623 + Ga0059261_4121 0.38 +0.2
4,278,624 - Ga0059261_4121 0.38 -0.8
4,278,624 - +0.7
4,278,624 - Ga0059261_4121 0.38 +0.5
4,278,624 - Ga0059261_4121 0.38 +1.0
4,278,624 - Ga0059261_4121 0.38 -1.2
4,278,668 + Ga0059261_4121 0.40 -1.3
4,278,669 - Ga0059261_4121 0.40 +0.2
4,278,674 + Ga0059261_4121 0.41 +1.2
4,278,674 + Ga0059261_4121 0.41 -0.3
4,278,674 + Ga0059261_4121 0.41 -0.5
4,278,674 + Ga0059261_4121 0.41 -1.6
4,278,674 + Ga0059261_4121 0.41 -0.3
4,278,674 + Ga0059261_4121 0.41 -0.4
4,278,674 + Ga0059261_4121 0.41 -1.0
4,278,674 + Ga0059261_4121 0.41 +0.5
4,278,675 - Ga0059261_4121 0.41 -0.9
4,278,675 - Ga0059261_4121 0.41 -0.1
4,278,675 - Ga0059261_4121 0.41 +0.3
4,278,675 - Ga0059261_4121 0.41 +0.1
4,278,675 - Ga0059261_4121 0.41 -0.5
4,278,675 - Ga0059261_4121 0.41 -0.2
4,278,743 + Ga0059261_4121 0.45 -0.2
4,278,744 - Ga0059261_4121 0.45 -0.9
4,278,744 - Ga0059261_4121 0.45 -0.5
4,278,744 - Ga0059261_4121 0.45 +0.0
4,278,744 - Ga0059261_4121 0.45 +0.0
4,278,752 + Ga0059261_4121 0.45 +0.0
4,278,752 + Ga0059261_4121 0.45 -1.8
4,278,752 + Ga0059261_4121 0.45 -1.1
4,278,752 + Ga0059261_4121 0.45 +1.0
4,278,752 + Ga0059261_4121 0.45 +0.0
4,278,753 - +1.0
4,278,753 - Ga0059261_4121 0.45 -0.2
4,278,753 - Ga0059261_4121 0.45 -0.1
4,278,753 - Ga0059261_4121 0.45 +0.7
4,278,797 + Ga0059261_4121 0.48 +0.0
4,278,797 + Ga0059261_4121 0.48 +0.4
4,278,797 + -0.6
4,278,798 - Ga0059261_4121 0.48 +0.1
4,278,798 - Ga0059261_4121 0.48 -1.0
4,278,798 - Ga0059261_4121 0.48 -0.5
4,278,885 - Ga0059261_4121 0.53 +0.1
4,278,885 - Ga0059261_4121 0.53 +0.4
4,278,885 - Ga0059261_4121 0.53 -0.3
4,278,885 - Ga0059261_4121 0.53 +0.5
4,278,885 - Ga0059261_4121 0.53 +0.1

Or see this region's nucleotide sequence