Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3936

Experiment: Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3935 and Ga0059261_3936 overlap by 4 nucleotidesGa0059261_3936 and Ga0059261_3937 are separated by 124 nucleotides Ga0059261_3935: Ga0059261_3935 - hypothetical protein, at 4,050,747 to 4,051,943 _3935 Ga0059261_3936: Ga0059261_3936 - hypothetical protein, at 4,051,940 to 4,052,611 _3936 Ga0059261_3937: Ga0059261_3937 - Imidazolonepropionase and related amidohydrolases, at 4,052,736 to 4,054,160 _3937 Position (kb) 4051 4052 4053Strain fitness (log2 ratio) -1 0 1 2at 4050.955 kb on + strand, within Ga0059261_3935at 4050.955 kb on + strand, within Ga0059261_3935at 4050.955 kb on + strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strandat 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strandat 4051.323 kb on - strand, within Ga0059261_3935at 4051.381 kb on + strand, within Ga0059261_3935at 4051.382 kb on - strand, within Ga0059261_3935at 4051.667 kb on + strand, within Ga0059261_3935at 4051.668 kb on - strand, within Ga0059261_3935at 4051.832 kb on + strandat 4052.180 kb on + strand, within Ga0059261_3936at 4052.180 kb on + strand, within Ga0059261_3936at 4052.181 kb on - strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.391 kb on + strand, within Ga0059261_3936at 4052.391 kb on + strandat 4052.391 kb on + strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.676 kb on - strandat 4052.676 kb on - strandat 4052.730 kb on + strandat 4052.730 kb on + strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.880 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strandat 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4053.063 kb on + strand, within Ga0059261_3937at 4053.064 kb on - strand, within Ga0059261_3937at 4053.108 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.312 kb on + strand, within Ga0059261_3937at 4053.312 kb on + strand, within Ga0059261_3937at 4053.313 kb on - strand, within Ga0059261_3937at 4053.313 kb on - strand, within Ga0059261_3937at 4053.396 kb on + strand, within Ga0059261_3937at 4053.396 kb on + strand, within Ga0059261_3937at 4053.397 kb on - strand, within Ga0059261_3937at 4053.438 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strandat 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strandat 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strandat 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.545 kb on + strand, within Ga0059261_3937at 4053.545 kb on + strand, within Ga0059261_3937at 4053.595 kb on - strand, within Ga0059261_3937

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml
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4,050,955 + Ga0059261_3935 0.17 +0.6
4,050,955 + Ga0059261_3935 0.17 +0.2
4,050,955 + Ga0059261_3935 0.17 +0.4
4,050,956 - Ga0059261_3935 0.17 +0.4
4,050,956 - Ga0059261_3935 0.17 -0.2
4,050,956 - Ga0059261_3935 0.17 -0.4
4,051,007 + Ga0059261_3935 0.22 +1.5
4,051,007 + Ga0059261_3935 0.22 +1.1
4,051,007 + Ga0059261_3935 0.22 -0.2
4,051,318 + Ga0059261_3935 0.48 -0.0
4,051,318 + Ga0059261_3935 0.48 +0.2
4,051,318 + Ga0059261_3935 0.48 +0.3
4,051,318 + Ga0059261_3935 0.48 +0.1
4,051,318 + Ga0059261_3935 0.48 -0.5
4,051,318 + Ga0059261_3935 0.48 +0.2
4,051,318 + Ga0059261_3935 0.48 +0.1
4,051,318 + Ga0059261_3935 0.48 +0.0
4,051,318 + Ga0059261_3935 0.48 +0.5
4,051,318 + Ga0059261_3935 0.48 -0.1
4,051,318 + Ga0059261_3935 0.48 -0.0
4,051,318 + Ga0059261_3935 0.48 +0.3
4,051,318 + Ga0059261_3935 0.48 -0.1
4,051,319 - Ga0059261_3935 0.48 +0.9
4,051,319 - Ga0059261_3935 0.48 +0.4
4,051,319 - Ga0059261_3935 0.48 +1.1
4,051,319 - Ga0059261_3935 0.48 -0.6
4,051,319 - Ga0059261_3935 0.48 -0.3
4,051,319 - Ga0059261_3935 0.48 -0.3
4,051,319 - Ga0059261_3935 0.48 +0.3
4,051,319 - Ga0059261_3935 0.48 +0.4
4,051,319 - Ga0059261_3935 0.48 -0.8
4,051,319 - Ga0059261_3935 0.48 -0.1
4,051,319 - Ga0059261_3935 0.48 +0.8
4,051,319 - Ga0059261_3935 0.48 -1.6
4,051,322 + Ga0059261_3935 0.48 +0.1
4,051,322 + Ga0059261_3935 0.48 +0.1
4,051,322 + Ga0059261_3935 0.48 +1.4
4,051,322 + Ga0059261_3935 0.48 -0.9
4,051,322 + Ga0059261_3935 0.48 +0.1
4,051,322 + Ga0059261_3935 0.48 +0.2
4,051,322 + Ga0059261_3935 0.48 -0.9
4,051,322 + Ga0059261_3935 0.48 -0.4
4,051,322 + Ga0059261_3935 0.48 -0.4
4,051,323 - Ga0059261_3935 0.48 -0.7
4,051,323 - Ga0059261_3935 0.48 +0.4
4,051,323 - -0.6
4,051,323 - Ga0059261_3935 0.48 -0.4
4,051,323 - Ga0059261_3935 0.48 -0.1
4,051,323 - +0.1
4,051,323 - Ga0059261_3935 0.48 -1.6
4,051,381 + Ga0059261_3935 0.53 +0.5
4,051,382 - Ga0059261_3935 0.53 +0.5
4,051,667 + Ga0059261_3935 0.77 +0.1
4,051,668 - Ga0059261_3935 0.77 +0.1
4,051,832 + -0.1
4,052,180 + Ga0059261_3936 0.36 +1.7
4,052,180 + Ga0059261_3936 0.36 +0.5
4,052,181 - Ga0059261_3936 0.36 +0.3
4,052,387 + Ga0059261_3936 0.67 +0.2
4,052,387 + Ga0059261_3936 0.67 -0.4
4,052,387 + Ga0059261_3936 0.67 -0.3
4,052,387 + Ga0059261_3936 0.67 +0.6
4,052,387 + Ga0059261_3936 0.67 -0.2
4,052,387 + Ga0059261_3936 0.67 +0.0
4,052,388 - Ga0059261_3936 0.67 -0.2
4,052,388 - Ga0059261_3936 0.67 +0.5
4,052,388 - Ga0059261_3936 0.67 +0.2
4,052,388 - Ga0059261_3936 0.67 +0.0
4,052,388 - Ga0059261_3936 0.67 -0.1
4,052,388 - Ga0059261_3936 0.67 -0.3
4,052,388 - Ga0059261_3936 0.67 +0.2
4,052,388 - Ga0059261_3936 0.67 +1.3
4,052,388 - Ga0059261_3936 0.67 +0.1
4,052,391 + Ga0059261_3936 0.67 +0.0
4,052,391 + +0.7
4,052,391 + Ga0059261_3936 0.67 -1.3
4,052,392 - Ga0059261_3936 0.67 +0.1
4,052,392 - Ga0059261_3936 0.67 -0.1
4,052,392 - Ga0059261_3936 0.67 +0.6
4,052,392 - Ga0059261_3936 0.67 -0.3
4,052,676 - -0.2
4,052,676 - +0.6
4,052,730 + +0.8
4,052,730 + -1.6
4,052,731 - +1.2
4,052,731 - +1.7
4,052,731 - +0.7
4,052,880 + Ga0059261_3937 0.10 +2.1
4,052,892 + +2.7
4,052,892 + Ga0059261_3937 0.11 +1.2
4,052,892 + Ga0059261_3937 0.11 +1.9
4,052,892 + Ga0059261_3937 0.11 +0.2
4,052,893 - Ga0059261_3937 0.11 +1.1
4,052,893 - Ga0059261_3937 0.11 +1.4
4,052,893 - Ga0059261_3937 0.11 +0.4
4,052,893 - Ga0059261_3937 0.11 +0.9
4,052,893 - Ga0059261_3937 0.11 +0.8
4,053,063 + Ga0059261_3937 0.23 +0.1
4,053,064 - Ga0059261_3937 0.23 +1.7
4,053,108 + Ga0059261_3937 0.26 +0.7
4,053,188 + Ga0059261_3937 0.32 -0.4
4,053,188 + Ga0059261_3937 0.32 +0.4
4,053,188 + Ga0059261_3937 0.32 +0.6
4,053,189 - Ga0059261_3937 0.32 +1.1
4,053,189 - Ga0059261_3937 0.32 +0.3
4,053,189 - Ga0059261_3937 0.32 +1.4
4,053,189 - Ga0059261_3937 0.32 +1.7
4,053,189 - Ga0059261_3937 0.32 -0.1
4,053,189 - Ga0059261_3937 0.32 -0.6
4,053,189 - Ga0059261_3937 0.32 +0.7
4,053,312 + Ga0059261_3937 0.40 -0.7
4,053,312 + Ga0059261_3937 0.40 +0.8
4,053,313 - Ga0059261_3937 0.40 +1.1
4,053,313 - Ga0059261_3937 0.40 +1.8
4,053,396 + Ga0059261_3937 0.46 +0.4
4,053,396 + Ga0059261_3937 0.46 +1.0
4,053,397 - Ga0059261_3937 0.46 +1.2
4,053,438 - Ga0059261_3937 0.49 -0.3
4,053,478 - Ga0059261_3937 0.52 +0.6
4,053,478 - Ga0059261_3937 0.52 +0.9
4,053,478 - +1.4
4,053,478 - Ga0059261_3937 0.52 +1.4
4,053,478 - Ga0059261_3937 0.52 +1.5
4,053,498 + Ga0059261_3937 0.53 +0.9
4,053,498 + Ga0059261_3937 0.53 +1.1
4,053,498 + +2.7
4,053,498 + Ga0059261_3937 0.53 +0.8
4,053,498 + Ga0059261_3937 0.53 +0.7
4,053,498 + Ga0059261_3937 0.53 +0.7
4,053,498 + Ga0059261_3937 0.53 -0.2
4,053,498 + Ga0059261_3937 0.53 +0.6
4,053,498 + Ga0059261_3937 0.53 +1.0
4,053,499 - Ga0059261_3937 0.54 +1.2
4,053,499 - Ga0059261_3937 0.54 +1.1
4,053,499 - +2.3
4,053,499 - Ga0059261_3937 0.54 +0.9
4,053,499 - Ga0059261_3937 0.54 +0.7
4,053,545 + Ga0059261_3937 0.57 +0.7
4,053,545 + Ga0059261_3937 0.57 +0.3
4,053,595 - Ga0059261_3937 0.60 +1.5

Or see this region's nucleotide sequence