Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3569 and Ga0059261_3570 are separated by 65 nucleotides Ga0059261_3570 and Ga0059261_3571 are separated by 169 nucleotides Ga0059261_3571 and Ga0059261_3572 are separated by 12 nucleotides
Ga0059261_3569: Ga0059261_3569 - chaperone protein DnaJ, at 3,695,501 to 3,696,619
_3569
Ga0059261_3570: Ga0059261_3570 - chaperone protein DnaK, at 3,696,685 to 3,698,598
_3570
Ga0059261_3571: Ga0059261_3571 - Uncharacterized protein conserved in bacteria, at 3,698,768 to 3,699,214
_3571
Ga0059261_3572: Ga0059261_3572 - YCII-related domain, at 3,699,227 to 3,699,640
_3572
Position (kb)
3696
3697
3698
3699 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3695.826 kb on + strand, within Ga0059261_3569 at 3695.826 kb on + strand, within Ga0059261_3569 at 3695.827 kb on - strand, within Ga0059261_3569 at 3695.827 kb on - strand, within Ga0059261_3569 at 3696.682 kb on - strand at 3696.682 kb on - strand at 3696.687 kb on - strand at 3696.687 kb on - strand at 3696.687 kb on - strand at 3696.687 kb on - strand at 3696.687 kb on - strand at 3698.728 kb on + strand at 3698.728 kb on + strand at 3698.728 kb on + strand at 3698.729 kb on - strand at 3698.729 kb on - strand at 3698.729 kb on - strand at 3698.729 kb on - strand at 3698.894 kb on + strand, within Ga0059261_3571 at 3699.212 kb on + strand at 3699.213 kb on - strand at 3699.213 kb on - strand at 3699.213 kb on - strand at 3699.213 kb on - strand at 3699.276 kb on + strand, within Ga0059261_3572 at 3699.276 kb on + strand, within Ga0059261_3572 at 3699.405 kb on + strand, within Ga0059261_3572 at 3699.406 kb on - strand, within Ga0059261_3572 at 3699.406 kb on - strand, within Ga0059261_3572 at 3699.406 kb on - strand, within Ga0059261_3572 at 3699.441 kb on + strand, within Ga0059261_3572 at 3699.441 kb on + strand, within Ga0059261_3572 at 3699.441 kb on + strand, within Ga0059261_3572 at 3699.441 kb on + strand, within Ga0059261_3572 at 3699.441 kb on + strand, within Ga0059261_3572 at 3699.442 kb on - strand, within Ga0059261_3572 at 3699.442 kb on - strand, within Ga0059261_3572 at 3699.442 kb on - strand, within Ga0059261_3572 at 3699.442 kb on - strand, within Ga0059261_3572 at 3699.442 kb on - strand, within Ga0059261_3572 at 3699.444 kb on + strand, within Ga0059261_3572 at 3699.444 kb on + strand, within Ga0059261_3572 at 3699.444 kb on + strand, within Ga0059261_3572 at 3699.445 kb on - strand, within Ga0059261_3572 at 3699.445 kb on - strand, within Ga0059261_3572 at 3699.445 kb on - strand, within Ga0059261_3572 at 3699.510 kb on + strand, within Ga0059261_3572 at 3699.510 kb on + strand, within Ga0059261_3572 at 3699.511 kb on - strand, within Ga0059261_3572 at 3699.511 kb on - strand, within Ga0059261_3572 at 3699.511 kb on - strand, within Ga0059261_3572
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 3,695,826 + Ga0059261_3569 0.29 +0.9 3,695,826 + Ga0059261_3569 0.29 +0.7 3,695,827 - Ga0059261_3569 0.29 +0.6 3,695,827 - Ga0059261_3569 0.29 +2.0 3,696,682 - +0.5 3,696,682 - +0.9 3,696,687 - +0.4 3,696,687 - -0.4 3,696,687 - +0.8 3,696,687 - +0.4 3,696,687 - +1.1 3,698,728 + -0.4 3,698,728 + +0.2 3,698,728 + +1.0 3,698,729 - -2.0 3,698,729 - +1.0 3,698,729 - -0.5 3,698,729 - +0.6 3,698,894 + Ga0059261_3571 0.28 -0.5 3,699,212 + -0.9 3,699,213 - -0.6 3,699,213 - +1.6 3,699,213 - +0.7 3,699,213 - -1.0 3,699,276 + Ga0059261_3572 0.12 -0.7 3,699,276 + Ga0059261_3572 0.12 +0.3 3,699,405 + Ga0059261_3572 0.43 -0.1 3,699,406 - Ga0059261_3572 0.43 +0.1 3,699,406 - Ga0059261_3572 0.43 -0.1 3,699,406 - Ga0059261_3572 0.43 +0.1 3,699,441 + Ga0059261_3572 0.52 -0.1 3,699,441 + Ga0059261_3572 0.52 -0.8 3,699,441 + Ga0059261_3572 0.52 +0.2 3,699,441 + Ga0059261_3572 0.52 +0.5 3,699,441 + Ga0059261_3572 0.52 +0.5 3,699,442 - Ga0059261_3572 0.52 -0.3 3,699,442 - Ga0059261_3572 0.52 -0.6 3,699,442 - Ga0059261_3572 0.52 -0.5 3,699,442 - Ga0059261_3572 0.52 -0.2 3,699,442 - Ga0059261_3572 0.52 -0.7 3,699,444 + Ga0059261_3572 0.52 -0.3 3,699,444 + Ga0059261_3572 0.52 +0.4 3,699,444 + Ga0059261_3572 0.52 -0.1 3,699,445 - Ga0059261_3572 0.53 -0.9 3,699,445 - Ga0059261_3572 0.53 -0.7 3,699,445 - Ga0059261_3572 0.53 -0.6 3,699,510 + Ga0059261_3572 0.68 +0.4 3,699,510 + Ga0059261_3572 0.68 -0.3 3,699,511 - Ga0059261_3572 0.69 -0.2 3,699,511 - Ga0059261_3572 0.69 +0.3 3,699,511 - Ga0059261_3572 0.69 -0.6
Or see this region's nucleotide sequence