Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3301 and Ga0059261_3302 are separated by 53 nucleotides Ga0059261_3302 and Ga0059261_3303 are separated by 47 nucleotides Ga0059261_3303 and Ga0059261_3304 are separated by 133 nucleotides Ga0059261_3304 and Ga0059261_3305 overlap by 4 nucleotides Ga0059261_3305 and Ga0059261_3306 are separated by 19 nucleotides
Ga0059261_3301: Ga0059261_3301 - Cyanate permease, at 3,428,607 to 3,429,794
_3301
Ga0059261_3302: Ga0059261_3302 - Helix-turn-helix domain, at 3,429,848 to 3,430,393
_3302
Ga0059261_3303: Ga0059261_3303 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 3,430,441 to 3,431,385
_3303
Ga0059261_3304: Ga0059261_3304 - transcriptional regulator, ArsR family, at 3,431,519 to 3,431,842
_3304
Ga0059261_3305: Ga0059261_3305 - Uncharacterized conserved protein, at 3,431,839 to 3,432,246
_3305
Ga0059261_3306: Ga0059261_3306 - hypothetical protein, at 3,432,266 to 3,432,472
_3306
Position (kb)
3430
3431
3432 Strain fitness (log2 ratio)
-2
-1
0
1 at 3429.472 kb on + strand, within Ga0059261_3301 at 3429.472 kb on + strand, within Ga0059261_3301 at 3429.473 kb on - strand, within Ga0059261_3301 at 3429.745 kb on - strand at 3429.832 kb on + strand at 3429.832 kb on + strand at 3429.833 kb on - strand at 3429.839 kb on + strand at 3429.839 kb on + strand at 3429.840 kb on - strand at 3429.840 kb on - strand at 3429.841 kb on + strand at 3429.841 kb on + strand at 3429.842 kb on - strand at 3430.404 kb on + strand at 3430.404 kb on + strand at 3430.404 kb on + strand at 3430.405 kb on - strand at 3430.405 kb on - strand at 3430.405 kb on - strand at 3430.405 kb on - strand at 3430.506 kb on + strand at 3430.506 kb on + strand at 3430.506 kb on + strand at 3430.506 kb on + strand at 3430.506 kb on + strand at 3430.507 kb on - strand at 3430.507 kb on - strand at 3430.507 kb on - strand at 3430.507 kb on - strand at 3430.507 kb on - strand at 3430.640 kb on + strand, within Ga0059261_3303 at 3430.641 kb on - strand, within Ga0059261_3303 at 3430.641 kb on - strand, within Ga0059261_3303 at 3430.641 kb on - strand, within Ga0059261_3303 at 3430.736 kb on + strand, within Ga0059261_3303 at 3430.736 kb on + strand, within Ga0059261_3303 at 3430.737 kb on - strand, within Ga0059261_3303 at 3431.150 kb on - strand, within Ga0059261_3303 at 3431.150 kb on - strand, within Ga0059261_3303 at 3431.221 kb on - strand, within Ga0059261_3303 at 3431.312 kb on + strand at 3431.312 kb on + strand at 3431.342 kb on - strand at 3431.461 kb on + strand at 3431.508 kb on - strand at 3431.508 kb on - strand at 3431.726 kb on + strand, within Ga0059261_3304 at 3432.058 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.175 kb on + strand, within Ga0059261_3305 at 3432.176 kb on - strand at 3432.176 kb on - strand, within Ga0059261_3305 at 3432.176 kb on - strand, within Ga0059261_3305 at 3432.291 kb on + strand, within Ga0059261_3306 at 3432.292 kb on - strand, within Ga0059261_3306 at 3432.383 kb on + strand, within Ga0059261_3306 at 3432.383 kb on + strand, within Ga0059261_3306 at 3432.384 kb on - strand, within Ga0059261_3306 at 3432.384 kb on - strand, within Ga0059261_3306 at 3432.384 kb on - strand, within Ga0059261_3306
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 3,429,472 + Ga0059261_3301 0.73 -0.6 3,429,472 + Ga0059261_3301 0.73 +0.0 3,429,473 - Ga0059261_3301 0.73 +0.1 3,429,745 - -0.4 3,429,832 + -0.4 3,429,832 + -0.0 3,429,833 - +0.5 3,429,839 + -1.1 3,429,839 + +0.3 3,429,840 - -0.4 3,429,840 - -0.1 3,429,841 + +0.1 3,429,841 + +0.7 3,429,842 - +0.3 3,430,404 + -0.3 3,430,404 + -0.3 3,430,404 + +0.1 3,430,405 - -1.8 3,430,405 - -0.7 3,430,405 - -0.5 3,430,405 - +0.4 3,430,506 + +0.1 3,430,506 + -0.3 3,430,506 + -0.2 3,430,506 + -0.6 3,430,506 + +0.3 3,430,507 - -0.4 3,430,507 - -0.3 3,430,507 - +0.3 3,430,507 - -0.2 3,430,507 - -0.5 3,430,640 + Ga0059261_3303 0.21 +0.3 3,430,641 - Ga0059261_3303 0.21 +0.4 3,430,641 - Ga0059261_3303 0.21 -0.3 3,430,641 - Ga0059261_3303 0.21 +0.5 3,430,736 + Ga0059261_3303 0.31 -0.4 3,430,736 + Ga0059261_3303 0.31 +1.5 3,430,737 - Ga0059261_3303 0.31 +0.4 3,431,150 - Ga0059261_3303 0.75 -0.0 3,431,150 - Ga0059261_3303 0.75 +0.3 3,431,221 - Ga0059261_3303 0.83 -0.5 3,431,312 + -0.4 3,431,312 + +0.2 3,431,342 - +0.2 3,431,461 + -0.2 3,431,508 - -0.9 3,431,508 - +0.6 3,431,726 + Ga0059261_3304 0.64 -0.0 3,432,058 + Ga0059261_3305 0.54 +0.4 3,432,175 + Ga0059261_3305 0.82 +0.4 3,432,175 + Ga0059261_3305 0.82 +0.1 3,432,175 + Ga0059261_3305 0.82 -0.1 3,432,175 + Ga0059261_3305 0.82 -0.3 3,432,175 + Ga0059261_3305 0.82 -0.2 3,432,175 + Ga0059261_3305 0.82 +0.3 3,432,175 + Ga0059261_3305 0.82 -0.2 3,432,176 - +0.1 3,432,176 - Ga0059261_3305 0.83 -0.2 3,432,176 - Ga0059261_3305 0.83 +0.2 3,432,291 + Ga0059261_3306 0.12 -0.4 3,432,292 - Ga0059261_3306 0.13 +0.3 3,432,383 + Ga0059261_3306 0.57 +0.5 3,432,383 + Ga0059261_3306 0.57 -0.0 3,432,384 - Ga0059261_3306 0.57 +0.5 3,432,384 - Ga0059261_3306 0.57 -0.8 3,432,384 - Ga0059261_3306 0.57 -0.2
Or see this region's nucleotide sequence