Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2295 and Ga0059261_2296 overlap by 8 nucleotides Ga0059261_2296 and Ga0059261_2297 are separated by 31 nucleotides Ga0059261_2297 and Ga0059261_2298 are separated by 4 nucleotides Ga0059261_2298 and Ga0059261_2299 overlap by 4 nucleotides
Ga0059261_2295: Ga0059261_2295 - DUF218 domain, at 2,398,466 to 2,399,014
_2295
Ga0059261_2296: Ga0059261_2296 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,399,007 to 2,399,693
_2296
Ga0059261_2297: Ga0059261_2297 - Predicted integral membrane protein, at 2,399,725 to 2,400,210
_2297
Ga0059261_2298: Ga0059261_2298 - prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) (from data) , at 2,400,215 to 2,400,964
_2298
Ga0059261_2299: Ga0059261_2299 - histidinol-phosphate aminotransferase, at 2,400,961 to 2,402,091
_2299
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2398.768 kb on + strand, within Ga0059261_2295 at 2398.817 kb on + strand, within Ga0059261_2295 at 2398.817 kb on + strand, within Ga0059261_2295 at 2398.967 kb on + strand at 2398.967 kb on + strand at 2398.967 kb on + strand at 2398.967 kb on + strand at 2398.967 kb on + strand at 2398.967 kb on + strand at 2398.968 kb on - strand at 2399.049 kb on + strand at 2399.121 kb on + strand at 2399.122 kb on - strand at 2399.794 kb on + strand, within Ga0059261_2297 at 2399.794 kb on + strand, within Ga0059261_2297 at 2399.794 kb on + strand, within Ga0059261_2297 at 2399.795 kb on - strand, within Ga0059261_2297 at 2399.795 kb on - strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.007 kb on + strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.008 kb on - strand, within Ga0059261_2297 at 2400.047 kb on + strand, within Ga0059261_2297 at 2400.047 kb on + strand, within Ga0059261_2297 at 2400.047 kb on + strand, within Ga0059261_2297 at 2400.048 kb on - strand, within Ga0059261_2297 at 2400.048 kb on - strand at 2400.048 kb on - strand, within Ga0059261_2297 at 2400.048 kb on - strand, within Ga0059261_2297 at 2400.048 kb on - strand, within Ga0059261_2297 at 2400.115 kb on + strand, within Ga0059261_2297 at 2400.115 kb on + strand, within Ga0059261_2297 at 2400.115 kb on + strand, within Ga0059261_2297 at 2400.115 kb on + strand, within Ga0059261_2297 at 2400.116 kb on - strand, within Ga0059261_2297 at 2400.209 kb on - strand at 2400.307 kb on - strand, within Ga0059261_2298 at 2400.307 kb on - strand, within Ga0059261_2298 at 2400.387 kb on + strand, within Ga0059261_2298 at 2400.387 kb on + strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.388 kb on - strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.468 kb on + strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.469 kb on - strand, within Ga0059261_2298 at 2400.646 kb on + strand, within Ga0059261_2298 at 2400.647 kb on - strand, within Ga0059261_2298 at 2400.776 kb on + strand, within Ga0059261_2298 at 2400.875 kb on - strand, within Ga0059261_2298 at 2401.099 kb on - strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.100 kb on + strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.101 kb on - strand, within Ga0059261_2299 at 2401.124 kb on + strand, within Ga0059261_2299 at 2401.124 kb on + strand, within Ga0059261_2299 at 2401.124 kb on + strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299 at 2401.125 kb on - strand, within Ga0059261_2299
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 2,398,768 + Ga0059261_2295 0.55 -1.8 2,398,817 + Ga0059261_2295 0.64 -3.4 2,398,817 + Ga0059261_2295 0.64 -2.8 2,398,967 + -1.7 2,398,967 + -1.4 2,398,967 + -1.6 2,398,967 + +0.9 2,398,967 + -5.7 2,398,967 + -4.0 2,398,968 - -1.9 2,399,049 + -0.1 2,399,121 + -1.4 2,399,122 - -0.7 2,399,794 + Ga0059261_2297 0.14 -0.1 2,399,794 + Ga0059261_2297 0.14 -0.5 2,399,794 + Ga0059261_2297 0.14 +0.1 2,399,795 - Ga0059261_2297 0.14 +0.1 2,399,795 - Ga0059261_2297 0.14 +0.0 2,400,007 + Ga0059261_2297 0.58 -0.1 2,400,007 + Ga0059261_2297 0.58 +1.0 2,400,007 + Ga0059261_2297 0.58 +0.5 2,400,007 + Ga0059261_2297 0.58 +0.3 2,400,007 + Ga0059261_2297 0.58 -1.2 2,400,007 + Ga0059261_2297 0.58 -0.5 2,400,008 - Ga0059261_2297 0.58 +0.3 2,400,008 - Ga0059261_2297 0.58 -0.3 2,400,008 - Ga0059261_2297 0.58 +0.1 2,400,008 - Ga0059261_2297 0.58 +0.4 2,400,008 - Ga0059261_2297 0.58 +1.9 2,400,008 - Ga0059261_2297 0.58 +0.1 2,400,047 + Ga0059261_2297 0.66 -1.9 2,400,047 + Ga0059261_2297 0.66 -0.3 2,400,047 + Ga0059261_2297 0.66 +1.0 2,400,048 - Ga0059261_2297 0.66 +0.1 2,400,048 - -1.7 2,400,048 - Ga0059261_2297 0.66 -0.7 2,400,048 - Ga0059261_2297 0.66 -0.7 2,400,048 - Ga0059261_2297 0.66 +0.0 2,400,115 + Ga0059261_2297 0.80 -0.9 2,400,115 + Ga0059261_2297 0.80 -0.2 2,400,115 + Ga0059261_2297 0.80 +0.2 2,400,115 + Ga0059261_2297 0.80 -0.4 2,400,116 - Ga0059261_2297 0.80 -0.1 2,400,209 - -0.1 2,400,307 - Ga0059261_2298 0.12 +0.0 2,400,307 - Ga0059261_2298 0.12 +0.3 2,400,387 + Ga0059261_2298 0.23 -1.1 2,400,387 + Ga0059261_2298 0.23 +0.4 2,400,388 - Ga0059261_2298 0.23 -1.0 2,400,388 - Ga0059261_2298 0.23 -0.1 2,400,388 - Ga0059261_2298 0.23 +0.2 2,400,388 - -0.1 2,400,388 - Ga0059261_2298 0.23 +1.0 2,400,388 - Ga0059261_2298 0.23 +1.3 2,400,388 - Ga0059261_2298 0.23 -0.7 2,400,388 - Ga0059261_2298 0.23 -0.1 2,400,468 + Ga0059261_2298 0.34 -0.2 2,400,468 + Ga0059261_2298 0.34 +1.1 2,400,468 + Ga0059261_2298 0.34 +0.4 2,400,468 + Ga0059261_2298 0.34 +0.3 2,400,468 + Ga0059261_2298 0.34 +0.6 2,400,468 + Ga0059261_2298 0.34 -0.2 2,400,468 + Ga0059261_2298 0.34 +0.1 2,400,468 + Ga0059261_2298 0.34 +0.2 2,400,469 - Ga0059261_2298 0.34 -0.3 2,400,469 - Ga0059261_2298 0.34 +0.8 2,400,469 - Ga0059261_2298 0.34 -0.1 2,400,469 - Ga0059261_2298 0.34 -0.1 2,400,469 - -0.1 2,400,469 - Ga0059261_2298 0.34 -0.0 2,400,469 - Ga0059261_2298 0.34 +0.2 2,400,469 - Ga0059261_2298 0.34 +0.6 2,400,469 - Ga0059261_2298 0.34 +0.6 2,400,469 - Ga0059261_2298 0.34 +0.6 2,400,469 - Ga0059261_2298 0.34 +0.3 2,400,469 - Ga0059261_2298 0.34 +0.4 2,400,469 - Ga0059261_2298 0.34 +0.1 2,400,469 - Ga0059261_2298 0.34 -0.3 2,400,646 + Ga0059261_2298 0.57 +0.7 2,400,647 - Ga0059261_2298 0.58 +0.3 2,400,776 + Ga0059261_2298 0.75 -0.1 2,400,875 - Ga0059261_2298 0.88 -0.4 2,401,099 - Ga0059261_2299 0.12 +0.1 2,401,100 + Ga0059261_2299 0.12 -0.5 2,401,100 + Ga0059261_2299 0.12 -0.2 2,401,100 + Ga0059261_2299 0.12 +0.2 2,401,100 + Ga0059261_2299 0.12 +0.7 2,401,100 + Ga0059261_2299 0.12 +0.3 2,401,100 + Ga0059261_2299 0.12 -0.2 2,401,100 + Ga0059261_2299 0.12 -0.9 2,401,100 + Ga0059261_2299 0.12 -0.5 2,401,100 + Ga0059261_2299 0.12 -0.4 2,401,100 + Ga0059261_2299 0.12 +0.1 2,401,100 + Ga0059261_2299 0.12 -0.7 2,401,100 + Ga0059261_2299 0.12 -1.3 2,401,101 - Ga0059261_2299 0.12 -1.0 2,401,101 - Ga0059261_2299 0.12 +0.1 2,401,101 - Ga0059261_2299 0.12 -1.9 2,401,101 - Ga0059261_2299 0.12 -1.0 2,401,101 - Ga0059261_2299 0.12 -0.4 2,401,101 - Ga0059261_2299 0.12 +0.6 2,401,101 - Ga0059261_2299 0.12 -0.2 2,401,101 - Ga0059261_2299 0.12 -0.0 2,401,101 - Ga0059261_2299 0.12 -0.1 2,401,101 - Ga0059261_2299 0.12 +0.1 2,401,101 - Ga0059261_2299 0.12 +1.5 2,401,101 - Ga0059261_2299 0.12 -0.2 2,401,101 - Ga0059261_2299 0.12 -0.6 2,401,101 - Ga0059261_2299 0.12 -1.3 2,401,101 - Ga0059261_2299 0.12 -0.1 2,401,124 + Ga0059261_2299 0.14 +0.4 2,401,124 + Ga0059261_2299 0.14 -0.1 2,401,124 + Ga0059261_2299 0.14 +0.1 2,401,125 - Ga0059261_2299 0.15 -0.1 2,401,125 - Ga0059261_2299 0.15 -0.5 2,401,125 - Ga0059261_2299 0.15 +0.2 2,401,125 - Ga0059261_2299 0.15 -0.0 2,401,125 - Ga0059261_2299 0.15 +0.2 2,401,125 - Ga0059261_2299 0.15 +0.1
Or see this region's nucleotide sequence