Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0877 and Ga0059261_0878 are separated by 3 nucleotides Ga0059261_0878 and Ga0059261_0879 overlap by 4 nucleotides Ga0059261_0879 and Ga0059261_0880 are separated by 47 nucleotides
Ga0059261_0877: Ga0059261_0877 - Parvulin-like peptidyl-prolyl isomerase, at 918,076 to 919,428
_0877
Ga0059261_0878: Ga0059261_0878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 919,432 to 920,436
_0878
Ga0059261_0879: Ga0059261_0879 - ribosomal RNA small subunit methyltransferase A, at 920,433 to 921,251
_0879
Ga0059261_0880: Ga0059261_0880 - Tetratricopeptide repeat, at 921,299 to 921,805
_0880
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 920.575 kb on + strand, within Ga0059261_0879 at 920.575 kb on + strand, within Ga0059261_0879 at 920.575 kb on + strand, within Ga0059261_0879 at 920.576 kb on - strand, within Ga0059261_0879 at 920.774 kb on + strand, within Ga0059261_0879 at 920.774 kb on + strand, within Ga0059261_0879 at 920.793 kb on + strand, within Ga0059261_0879 at 920.793 kb on + strand, within Ga0059261_0879 at 920.793 kb on + strand, within Ga0059261_0879 at 920.793 kb on + strand, within Ga0059261_0879 at 920.794 kb on - strand, within Ga0059261_0879 at 920.794 kb on - strand at 920.794 kb on - strand, within Ga0059261_0879 at 920.794 kb on - strand, within Ga0059261_0879 at 920.794 kb on - strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.795 kb on + strand, within Ga0059261_0879 at 920.796 kb on - strand, within Ga0059261_0879 at 920.796 kb on - strand, within Ga0059261_0879 at 920.796 kb on - strand, within Ga0059261_0879 at 920.796 kb on - strand, within Ga0059261_0879 at 920.796 kb on - strand at 920.796 kb on - strand, within Ga0059261_0879 at 920.796 kb on - strand, within Ga0059261_0879 at 920.799 kb on - strand, within Ga0059261_0879 at 920.922 kb on + strand at 920.923 kb on - strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.032 kb on + strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.033 kb on - strand, within Ga0059261_0879 at 921.205 kb on + strand at 921.249 kb on + strand at 921.249 kb on + strand at 921.250 kb on - strand at 921.250 kb on - strand at 921.250 kb on - strand at 921.269 kb on - strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.300 kb on + strand at 921.301 kb on - strand at 921.301 kb on - strand at 921.301 kb on - strand at 921.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 920,575 + Ga0059261_0879 0.17 -2.1 920,575 + Ga0059261_0879 0.17 -1.3 920,575 + Ga0059261_0879 0.17 -0.6 920,576 - Ga0059261_0879 0.17 +0.1 920,774 + Ga0059261_0879 0.42 -1.9 920,774 + Ga0059261_0879 0.42 -1.0 920,793 + Ga0059261_0879 0.44 -0.7 920,793 + Ga0059261_0879 0.44 -2.0 920,793 + Ga0059261_0879 0.44 -0.6 920,793 + Ga0059261_0879 0.44 -0.9 920,794 - Ga0059261_0879 0.44 -2.6 920,794 - -0.9 920,794 - Ga0059261_0879 0.44 -0.6 920,794 - Ga0059261_0879 0.44 -1.3 920,794 - Ga0059261_0879 0.44 +0.7 920,795 + Ga0059261_0879 0.44 -2.4 920,795 + Ga0059261_0879 0.44 -1.6 920,795 + -0.3 920,795 + Ga0059261_0879 0.44 -0.9 920,795 + Ga0059261_0879 0.44 -1.2 920,795 + Ga0059261_0879 0.44 -1.5 920,795 + Ga0059261_0879 0.44 -1.4 920,795 + Ga0059261_0879 0.44 -0.9 920,795 + Ga0059261_0879 0.44 -2.7 920,795 + Ga0059261_0879 0.44 -1.2 920,795 + Ga0059261_0879 0.44 -1.3 920,796 - Ga0059261_0879 0.44 -1.3 920,796 - Ga0059261_0879 0.44 -1.6 920,796 - Ga0059261_0879 0.44 -1.4 920,796 - Ga0059261_0879 0.44 -1.0 920,796 - +0.3 920,796 - Ga0059261_0879 0.44 -1.9 920,796 - Ga0059261_0879 0.44 -1.4 920,799 - Ga0059261_0879 0.45 -1.0 920,922 + -0.9 920,923 - Ga0059261_0879 0.60 -1.1 921,032 + Ga0059261_0879 0.73 -1.2 921,032 + Ga0059261_0879 0.73 -2.2 921,032 + Ga0059261_0879 0.73 -2.9 921,032 + Ga0059261_0879 0.73 -0.9 921,033 - Ga0059261_0879 0.73 -2.3 921,033 - Ga0059261_0879 0.73 -1.3 921,033 - Ga0059261_0879 0.73 -1.0 921,033 - Ga0059261_0879 0.73 -0.2 921,205 + -2.5 921,249 + -0.9 921,249 + -0.1 921,250 - +0.7 921,250 - +0.5 921,250 - +0.7 921,269 - +0.5 921,300 + -0.3 921,300 + -0.2 921,300 + +0.6 921,300 + -0.4 921,300 + +0.1 921,300 + -0.8 921,300 + -0.6 921,300 + -0.1 921,300 + -0.1 921,300 + -0.4 921,301 - -0.3 921,301 - +1.5 921,301 - -0.5 921,301 - +0.3
Or see this region's nucleotide sequence