Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0692

Experiment: Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0690 and Ga0059261_0691 are separated by 89 nucleotidesGa0059261_0691 and Ga0059261_0692 are separated by 15 nucleotidesGa0059261_0692 and Ga0059261_0693 are separated by 4 nucleotides Ga0059261_0690: Ga0059261_0690 - Acetyltransferases, at 728,669 to 729,130 _0690 Ga0059261_0691: Ga0059261_0691 - hypothetical protein, at 729,220 to 729,840 _0691 Ga0059261_0692: Ga0059261_0692 - Predicted secreted protein, at 729,856 to 730,116 _0692 Ga0059261_0693: Ga0059261_0693 - Predicted hydrolase of the metallo-beta-lactamase superfamily, at 730,121 to 731,830 _0693 Position (kb) 729 730 731Strain fitness (log2 ratio) -1 0 1 2at 728.978 kb on + strand, within Ga0059261_0690at 728.978 kb on + strand, within Ga0059261_0690at 728.979 kb on - strand, within Ga0059261_0690at 729.038 kb on + strand, within Ga0059261_0690at 729.039 kb on - strand, within Ga0059261_0690at 729.128 kb on + strandat 729.129 kb on - strandat 729.145 kb on + strandat 729.145 kb on + strandat 729.145 kb on + strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.146 kb on - strandat 729.177 kb on + strandat 729.177 kb on + strandat 729.177 kb on + strandat 729.177 kb on + strandat 729.178 kb on - strandat 729.178 kb on - strandat 729.259 kb on + strandat 729.259 kb on + strandat 729.260 kb on - strandat 729.260 kb on - strandat 729.316 kb on + strand, within Ga0059261_0691at 729.317 kb on - strand, within Ga0059261_0691at 729.317 kb on - strand, within Ga0059261_0691at 729.317 kb on - strand, within Ga0059261_0691at 729.367 kb on + strand, within Ga0059261_0691at 729.368 kb on - strand, within Ga0059261_0691at 729.368 kb on - strand, within Ga0059261_0691at 729.368 kb on - strand, within Ga0059261_0691at 729.368 kb on - strand, within Ga0059261_0691at 729.368 kb on - strand, within Ga0059261_0691at 729.427 kb on + strand, within Ga0059261_0691at 729.461 kb on - strand, within Ga0059261_0691at 729.580 kb on + strand, within Ga0059261_0691at 729.580 kb on + strand, within Ga0059261_0691at 729.580 kb on + strand, within Ga0059261_0691at 729.580 kb on + strand, within Ga0059261_0691at 729.581 kb on - strand, within Ga0059261_0691at 729.581 kb on - strand, within Ga0059261_0691at 729.599 kb on + strand, within Ga0059261_0691at 729.602 kb on - strand, within Ga0059261_0691at 729.679 kb on + strand, within Ga0059261_0691at 729.680 kb on - strand, within Ga0059261_0691at 729.680 kb on - strand, within Ga0059261_0691at 729.680 kb on - strand, within Ga0059261_0691at 729.680 kb on - strand, within Ga0059261_0691at 729.680 kb on - strand, within Ga0059261_0691at 729.775 kb on + strand, within Ga0059261_0691at 729.799 kb on + strandat 729.799 kb on + strandat 729.799 kb on + strandat 729.799 kb on + strandat 729.800 kb on - strandat 729.800 kb on - strandat 729.800 kb on - strandat 729.800 kb on - strandat 729.805 kb on + strandat 729.805 kb on + strandat 729.805 kb on + strandat 729.805 kb on + strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.806 kb on - strandat 729.866 kb on + strandat 729.902 kb on + strand, within Ga0059261_0692at 729.902 kb on + strand, within Ga0059261_0692at 729.902 kb on + strand, within Ga0059261_0692at 729.902 kb on + strand, within Ga0059261_0692at 729.902 kb on + strand, within Ga0059261_0692at 729.903 kb on - strand, within Ga0059261_0692at 729.903 kb on - strand, within Ga0059261_0692at 729.903 kb on - strand, within Ga0059261_0692at 729.903 kb on - strand, within Ga0059261_0692at 729.903 kb on - strand, within Ga0059261_0692at 729.911 kb on + strand, within Ga0059261_0692at 729.912 kb on - strand, within Ga0059261_0692at 729.912 kb on - strand, within Ga0059261_0692at 729.946 kb on - strand, within Ga0059261_0692at 729.964 kb on + strand, within Ga0059261_0692at 729.965 kb on - strand, within Ga0059261_0692at 730.035 kb on + strand, within Ga0059261_0692at 730.036 kb on - strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.088 kb on + strand, within Ga0059261_0692at 730.089 kb on - strand, within Ga0059261_0692at 730.122 kb on + strandat 730.122 kb on + strandat 730.122 kb on + strandat 730.122 kb on + strandat 730.122 kb on + strandat 730.123 kb on - strandat 730.123 kb on - strandat 730.123 kb on - strandat 730.639 kb on - strandat 730.639 kb on - strand, within Ga0059261_0693

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml
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728,978 + Ga0059261_0690 0.67 +1.3
728,978 + Ga0059261_0690 0.67 +0.3
728,979 - Ga0059261_0690 0.67 -0.7
729,038 + Ga0059261_0690 0.80 +0.9
729,039 - Ga0059261_0690 0.80 -0.1
729,128 + -0.8
729,129 - +0.5
729,145 + -0.6
729,145 + -0.0
729,145 + -0.0
729,146 - -1.4
729,146 - +0.4
729,146 - -1.0
729,146 - +0.5
729,146 - -0.2
729,146 - -0.9
729,146 - +0.1
729,177 + +0.7
729,177 + -1.2
729,177 + -0.6
729,177 + +0.4
729,178 - -0.2
729,178 - -0.8
729,259 + +0.5
729,259 + -0.5
729,260 - +0.3
729,260 - +0.2
729,316 + Ga0059261_0691 0.15 -0.2
729,317 - Ga0059261_0691 0.16 -0.9
729,317 - Ga0059261_0691 0.16 +0.7
729,317 - Ga0059261_0691 0.16 -0.8
729,367 + Ga0059261_0691 0.24 -0.4
729,368 - Ga0059261_0691 0.24 +0.3
729,368 - Ga0059261_0691 0.24 +0.5
729,368 - Ga0059261_0691 0.24 +0.1
729,368 - Ga0059261_0691 0.24 +0.0
729,368 - Ga0059261_0691 0.24 -0.6
729,427 + Ga0059261_0691 0.33 +0.0
729,461 - Ga0059261_0691 0.39 -0.0
729,580 + Ga0059261_0691 0.58 -0.6
729,580 + Ga0059261_0691 0.58 +0.4
729,580 + Ga0059261_0691 0.58 +1.3
729,580 + Ga0059261_0691 0.58 +0.6
729,581 - Ga0059261_0691 0.58 -0.0
729,581 - Ga0059261_0691 0.58 -0.2
729,599 + Ga0059261_0691 0.61 -0.1
729,602 - Ga0059261_0691 0.62 -0.3
729,679 + Ga0059261_0691 0.74 -0.3
729,680 - Ga0059261_0691 0.74 +2.0
729,680 - Ga0059261_0691 0.74 -0.2
729,680 - Ga0059261_0691 0.74 -0.1
729,680 - Ga0059261_0691 0.74 +0.5
729,680 - Ga0059261_0691 0.74 +0.0
729,775 + Ga0059261_0691 0.89 +0.3
729,799 + -0.1
729,799 + +1.2
729,799 + -0.5
729,799 + +0.2
729,800 - +0.7
729,800 - -0.2
729,800 - -0.7
729,800 - -0.1
729,805 + +0.3
729,805 + -0.1
729,805 + +0.7
729,805 + +0.2
729,806 - +0.7
729,806 - -0.3
729,806 - +0.3
729,806 - -0.3
729,806 - +0.5
729,806 - -0.4
729,806 - +0.4
729,866 + +0.3
729,902 + Ga0059261_0692 0.18 +1.2
729,902 + Ga0059261_0692 0.18 +0.2
729,902 + Ga0059261_0692 0.18 +0.5
729,902 + Ga0059261_0692 0.18 +0.2
729,902 + Ga0059261_0692 0.18 -1.1
729,903 - Ga0059261_0692 0.18 -0.3
729,903 - Ga0059261_0692 0.18 +0.8
729,903 - Ga0059261_0692 0.18 +0.3
729,903 - Ga0059261_0692 0.18 +0.5
729,903 - Ga0059261_0692 0.18 +0.3
729,911 + Ga0059261_0692 0.21 +0.2
729,912 - Ga0059261_0692 0.21 -0.0
729,912 - Ga0059261_0692 0.21 -0.1
729,946 - Ga0059261_0692 0.34 +0.5
729,964 + Ga0059261_0692 0.41 +0.5
729,965 - Ga0059261_0692 0.42 -0.6
730,035 + Ga0059261_0692 0.69 +0.4
730,036 - Ga0059261_0692 0.69 -0.1
730,088 + Ga0059261_0692 0.89 -0.2
730,088 + Ga0059261_0692 0.89 -1.3
730,088 + Ga0059261_0692 0.89 -0.7
730,088 + Ga0059261_0692 0.89 +0.6
730,088 + Ga0059261_0692 0.89 +0.4
730,088 + Ga0059261_0692 0.89 +0.2
730,089 - Ga0059261_0692 0.89 -0.3
730,122 + -0.3
730,122 + +1.1
730,122 + -0.6
730,122 + +0.7
730,122 + -0.3
730,123 - -1.6
730,123 - -0.3
730,123 - -0.1
730,639 - +1.3
730,639 - Ga0059261_0693 0.30 +0.2

Or see this region's nucleotide sequence