Experiment: Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0627 and Ga0059261_0628 overlap by 4 nucleotides Ga0059261_0628 and Ga0059261_0629 overlap by 47 nucleotides Ga0059261_0629 and Ga0059261_0630 overlap by 13 nucleotides
Ga0059261_0627: Ga0059261_0627 - cobalamin-5'-phosphate synthase (EC 2.7.8.26), at 666,727 to 667,443
_0627
Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399
_0628
Ga0059261_0629: Ga0059261_0629 - cobalamin biosynthesis protein CobD, at 668,353 to 669,324
_0629
Ga0059261_0630: Ga0059261_0630 - adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10), at 669,312 to 670,775
_0630
Position (kb) 668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2 at 667.635 kb on + strand, within Ga0059261_0628 at 667.636 kb on - strand at 667.728 kb on + strand, within Ga0059261_0628 at 667.743 kb on + strand, within Ga0059261_0628 at 667.744 kb on - strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.317 kb on - strand at 668.317 kb on - strand at 668.458 kb on + strand, within Ga0059261_0629 at 668.458 kb on + strand, within Ga0059261_0629 at 668.458 kb on + strand, within Ga0059261_0629 at 668.459 kb on - strand at 668.459 kb on - strand, within Ga0059261_0629 at 668.816 kb on + strand, within Ga0059261_0629 at 668.816 kb on + strand, within Ga0059261_0629 at 668.889 kb on - strand, within Ga0059261_0629 at 668.908 kb on - strand, within Ga0059261_0629 at 668.908 kb on - strand, within Ga0059261_0629 at 668.917 kb on + strand, within Ga0059261_0629 at 668.917 kb on + strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand at 669.179 kb on - strand, within Ga0059261_0629 at 669.179 kb on - strand, within Ga0059261_0629 at 669.179 kb on - strand, within Ga0059261_0629 at 669.265 kb on + strand at 669.265 kb on + strand at 669.265 kb on + strand at 669.265 kb on + strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.521 kb on + strand, within Ga0059261_0630 at 669.522 kb on - strand, within Ga0059261_0630 at 669.755 kb on + strand, within Ga0059261_0630 at 669.755 kb on + strand, within Ga0059261_0630 at 669.755 kb on + strand, within Ga0059261_0630 at 669.755 kb on + strand, within Ga0059261_0630 at 669.756 kb on - strand, within Ga0059261_0630 at 670.102 kb on + strand, within Ga0059261_0630 at 670.147 kb on + strand, within Ga0059261_0630 at 670.147 kb on + strand, within Ga0059261_0630 at 670.148 kb on - strand, within Ga0059261_0630 at 670.148 kb on - strand, within Ga0059261_0630 at 670.148 kb on - strand, within Ga0059261_0630 at 670.148 kb on - strand, within Ga0059261_0630 at 670.256 kb on + strand, within Ga0059261_0630 at 670.315 kb on - strand, within Ga0059261_0630
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml remove 667,635 + Ga0059261_0628 0.20 -0.9 667,636 - +0.7 667,728 + Ga0059261_0628 0.30 -0.5 667,743 + Ga0059261_0628 0.32 -0.2 667,744 - Ga0059261_0628 0.32 -0.8 668,121 + Ga0059261_0628 0.71 +0.2 668,121 + Ga0059261_0628 0.71 +0.0 668,121 + Ga0059261_0628 0.71 -0.1 668,121 + Ga0059261_0628 0.71 -0.0 668,121 + Ga0059261_0628 0.71 +0.0 668,122 - Ga0059261_0628 0.71 +0.8 668,122 - Ga0059261_0628 0.71 -0.2 668,317 - +0.1 668,317 - -0.9 668,458 + Ga0059261_0629 0.11 -0.1 668,458 + Ga0059261_0629 0.11 +1.7 668,458 + Ga0059261_0629 0.11 -0.1 668,459 - -0.9 668,459 - Ga0059261_0629 0.11 +0.7 668,816 + Ga0059261_0629 0.48 +0.3 668,816 + Ga0059261_0629 0.48 -0.1 668,889 - Ga0059261_0629 0.55 -0.1 668,908 - Ga0059261_0629 0.57 +0.1 668,908 - Ga0059261_0629 0.57 -0.4 668,917 + Ga0059261_0629 0.58 +0.0 668,917 + Ga0059261_0629 0.58 -1.1 668,918 - Ga0059261_0629 0.58 +0.5 668,918 - Ga0059261_0629 0.58 +0.3 668,918 - Ga0059261_0629 0.58 -0.5 668,918 - Ga0059261_0629 0.58 -1.3 668,918 - Ga0059261_0629 0.58 +0.2 669,178 + Ga0059261_0629 0.85 +0.9 669,178 + Ga0059261_0629 0.85 -0.0 669,178 + Ga0059261_0629 0.85 -0.3 669,178 + +2.1 669,179 - Ga0059261_0629 0.85 +0.3 669,179 - Ga0059261_0629 0.85 -0.2 669,179 - Ga0059261_0629 0.85 -0.2 669,265 + -0.6 669,265 + +1.0 669,265 + +0.4 669,265 + -0.9 669,266 - +0.5 669,266 - +0.2 669,266 - -0.3 669,266 - -0.6 669,266 - +0.1 669,521 + Ga0059261_0630 0.14 +0.0 669,522 - Ga0059261_0630 0.14 -0.7 669,755 + Ga0059261_0630 0.30 -2.1 669,755 + Ga0059261_0630 0.30 -0.0 669,755 + Ga0059261_0630 0.30 +0.4 669,755 + Ga0059261_0630 0.30 -0.1 669,756 - Ga0059261_0630 0.30 -0.1 670,102 + Ga0059261_0630 0.54 +0.1 670,147 + Ga0059261_0630 0.57 -1.6 670,147 + Ga0059261_0630 0.57 +1.0 670,148 - Ga0059261_0630 0.57 -1.5 670,148 - Ga0059261_0630 0.57 +1.1 670,148 - Ga0059261_0630 0.57 +1.1 670,148 - Ga0059261_0630 0.57 -0.6 670,256 + Ga0059261_0630 0.64 +0.4 670,315 - Ga0059261_0630 0.69 -0.3
Or see this region's nucleotide sequence