Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0318

Experiment: Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0317 and Ga0059261_0318 are separated by 121 nucleotidesGa0059261_0318 and Ga0059261_0319 are separated by 128 nucleotides Ga0059261_0317: Ga0059261_0317 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 296,846 to 298,402 _0317 Ga0059261_0318: Ga0059261_0318 - CHAP domain, at 298,524 to 299,102 _0318 Ga0059261_0319: Ga0059261_0319 - Uncharacterized protein conserved in bacteria, at 299,231 to 300,463 _0319 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1at 297.901 kb on - strand, within Ga0059261_0317at 298.455 kb on + strandat 298.455 kb on + strandat 298.456 kb on - strandat 298.456 kb on - strandat 298.456 kb on - strandat 298.523 kb on + strandat 298.523 kb on + strandat 298.523 kb on + strandat 298.523 kb on + strandat 298.524 kb on - strandat 298.524 kb on - strandat 298.524 kb on - strandat 298.524 kb on - strandat 298.524 kb on - strandat 298.617 kb on + strand, within Ga0059261_0318at 298.617 kb on + strand, within Ga0059261_0318at 298.617 kb on + strand, within Ga0059261_0318at 298.617 kb on + strandat 298.617 kb on + strand, within Ga0059261_0318at 298.618 kb on - strand, within Ga0059261_0318at 298.618 kb on - strand, within Ga0059261_0318at 298.710 kb on + strand, within Ga0059261_0318at 298.710 kb on + strand, within Ga0059261_0318at 298.971 kb on + strand, within Ga0059261_0318at 298.972 kb on - strand, within Ga0059261_0318at 298.972 kb on - strand, within Ga0059261_0318at 298.972 kb on - strand, within Ga0059261_0318at 298.993 kb on - strand, within Ga0059261_0318at 298.993 kb on - strand, within Ga0059261_0318at 298.993 kb on - strand, within Ga0059261_0318at 298.993 kb on - strand, within Ga0059261_0318at 299.067 kb on + strandat 299.067 kb on + strandat 299.067 kb on + strandat 299.067 kb on + strandat 299.068 kb on - strandat 299.068 kb on - strandat 299.068 kb on - strandat 299.068 kb on - strandat 299.068 kb on - strandat 299.068 kb on - strandat 299.091 kb on + strandat 299.100 kb on + strandat 299.100 kb on + strandat 299.101 kb on - strandat 299.101 kb on - strandat 299.256 kb on + strandat 299.256 kb on + strandat 299.256 kb on + strandat 299.256 kb on + strandat 299.257 kb on - strandat 299.257 kb on - strandat 299.257 kb on - strandat 299.257 kb on - strandat 299.257 kb on - strandat 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.405 kb on + strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.406 kb on - strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.408 kb on + strand, within Ga0059261_0319at 299.409 kb on - strand, within Ga0059261_0319at 299.409 kb on - strand, within Ga0059261_0319at 299.409 kb on - strand, within Ga0059261_0319at 299.409 kb on - strand, within Ga0059261_0319at 299.409 kb on - strand, within Ga0059261_0319at 299.558 kb on + strand, within Ga0059261_0319at 299.558 kb on + strand, within Ga0059261_0319at 299.558 kb on + strand, within Ga0059261_0319at 299.559 kb on - strand, within Ga0059261_0319at 299.559 kb on - strand, within Ga0059261_0319at 299.717 kb on + strand, within Ga0059261_0319at 300.083 kb on + strand, within Ga0059261_0319at 300.083 kb on + strand, within Ga0059261_0319at 300.084 kb on - strand, within Ga0059261_0319at 300.084 kb on - strand, within Ga0059261_0319at 300.101 kb on + strand, within Ga0059261_0319at 300.102 kb on - strand, within Ga0059261_0319at 300.102 kb on - strand, within Ga0059261_0319

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0005 mg/ml
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297,901 - Ga0059261_0317 0.68 -2.6
298,455 + -0.3
298,455 + -0.2
298,456 - -0.3
298,456 - -0.6
298,456 - +0.1
298,523 + -0.5
298,523 + -0.5
298,523 + +0.1
298,523 + +1.4
298,524 - +1.3
298,524 - +0.1
298,524 - -0.3
298,524 - +0.3
298,524 - +0.7
298,617 + Ga0059261_0318 0.16 +1.7
298,617 + Ga0059261_0318 0.16 -0.1
298,617 + Ga0059261_0318 0.16 -0.1
298,617 + -0.3
298,617 + Ga0059261_0318 0.16 +0.6
298,618 - Ga0059261_0318 0.16 +0.5
298,618 - Ga0059261_0318 0.16 +0.6
298,710 + Ga0059261_0318 0.32 +0.4
298,710 + Ga0059261_0318 0.32 +0.5
298,971 + Ga0059261_0318 0.77 +0.1
298,972 - Ga0059261_0318 0.77 -0.3
298,972 - Ga0059261_0318 0.77 +0.0
298,972 - Ga0059261_0318 0.77 -0.7
298,993 - Ga0059261_0318 0.81 +0.2
298,993 - Ga0059261_0318 0.81 +0.8
298,993 - Ga0059261_0318 0.81 +0.5
298,993 - Ga0059261_0318 0.81 +0.1
299,067 + +0.3
299,067 + +0.5
299,067 + -0.4
299,067 + +0.4
299,068 - +0.7
299,068 - +0.2
299,068 - +0.7
299,068 - +0.7
299,068 - -0.2
299,068 - +0.7
299,091 + -0.4
299,100 + -0.6
299,100 + +0.5
299,101 - +0.3
299,101 - +0.2
299,256 + -0.1
299,256 + -0.3
299,256 + -0.7
299,256 + +0.1
299,257 - +1.0
299,257 - +0.3
299,257 - +0.3
299,257 - +1.1
299,257 - +0.4
299,405 + Ga0059261_0319 0.14 -0.9
299,405 + Ga0059261_0319 0.14 -0.5
299,405 + Ga0059261_0319 0.14 +0.5
299,405 + Ga0059261_0319 0.14 +0.3
299,405 + Ga0059261_0319 0.14 +0.8
299,405 + Ga0059261_0319 0.14 -0.1
299,405 + Ga0059261_0319 0.14 +0.1
299,405 + Ga0059261_0319 0.14 -0.4
299,405 + Ga0059261_0319 0.14 +0.9
299,405 + Ga0059261_0319 0.14 -1.2
299,405 + Ga0059261_0319 0.14 +0.3
299,406 - Ga0059261_0319 0.14 +0.9
299,406 - Ga0059261_0319 0.14 -0.3
299,406 - Ga0059261_0319 0.14 +0.5
299,406 - Ga0059261_0319 0.14 +0.1
299,406 - Ga0059261_0319 0.14 -0.5
299,406 - Ga0059261_0319 0.14 -1.1
299,406 - Ga0059261_0319 0.14 +0.1
299,406 - Ga0059261_0319 0.14 +0.8
299,406 - Ga0059261_0319 0.14 -0.6
299,406 - Ga0059261_0319 0.14 -0.7
299,408 + Ga0059261_0319 0.14 -0.0
299,408 + Ga0059261_0319 0.14 -0.2
299,408 + Ga0059261_0319 0.14 -0.2
299,408 + Ga0059261_0319 0.14 +0.4
299,408 + Ga0059261_0319 0.14 +0.0
299,408 + Ga0059261_0319 0.14 +0.2
299,409 - Ga0059261_0319 0.14 -0.2
299,409 - Ga0059261_0319 0.14 -1.0
299,409 - Ga0059261_0319 0.14 -0.3
299,409 - Ga0059261_0319 0.14 +1.2
299,409 - Ga0059261_0319 0.14 +0.4
299,558 + Ga0059261_0319 0.27 +0.4
299,558 + Ga0059261_0319 0.27 -1.3
299,558 + Ga0059261_0319 0.27 -0.2
299,559 - Ga0059261_0319 0.27 +0.7
299,559 - Ga0059261_0319 0.27 -0.2
299,717 + Ga0059261_0319 0.39 +0.2
300,083 + Ga0059261_0319 0.69 +0.7
300,083 + Ga0059261_0319 0.69 +0.3
300,084 - Ga0059261_0319 0.69 -0.5
300,084 - Ga0059261_0319 0.69 -0.3
300,101 + Ga0059261_0319 0.71 +0.1
300,102 - Ga0059261_0319 0.71 -0.1
300,102 - Ga0059261_0319 0.71 -0.2

Or see this region's nucleotide sequence